planktoscope/flows/flow_mqtt

[
    {
        "id": "259c8713.b50e28",
        "type": "tab",
        "label": "Main",
        "disabled": false,
        "info": ""
    },
    {
        "id": "6d0d6fc7.d30bb",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "sample_ship",
        "label": "Name of the ship",
        "tooltip": "",
        "group": "3e1ba03d.f01d8",
        "order": 3,
        "width": 12,
        "height": 1,
        "passthru": true,
        "mode": "text",
        "delay": 300,
        "topic": "sample_ship",
        "x": 1370,
        "y": 140,
        "wires": [
            [
                "de9708c2.d00068"
            ]
        ]
    },
    {
        "id": "43b12fe4.c5aa3",
        "type": "ui_dropdown",
        "z": "259c8713.b50e28",
        "name": "sample_sampling_gear",
        "label": "Sampling gear",
        "tooltip": "",
        "place": "Select",
        "group": "3e1ba03d.f01d8",
        "order": 5,
        "width": 0,
        "height": 0,
        "passthru": true,
        "options": [
            {
                "label": "Plankton net",
                "value": "net",
                "type": "str"
            },
            {
                "label": "Niskin bottle 12L",
                "value": "niskin_12L",
                "type": "str"
            },
            {
                "label": "Niskin bottle 24L",
                "value": "niskin_24L",
                "type": "str"
            },
            {
                "label": "Pass Hull",
                "value": "pass_hull",
                "type": "str"
            }
        ],
        "payload": "",
        "topic": "sample_sampling_gear",
        "x": 1330,
        "y": 220,
        "wires": [
            [
                "3c6a723.145778e"
            ]
        ]
    },
    {
        "id": "458408d7.2b3b68",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "sample_operator",
        "label": "Name of the operator",
        "tooltip": "",
        "group": "3e1ba03d.f01d8",
        "order": 4,
        "width": 12,
        "height": 1,
        "passthru": true,
        "mode": "text",
        "delay": 300,
        "topic": "sample_operator",
        "x": 1350,
        "y": 180,
        "wires": [
            [
                "a2ae6c99.188f2"
            ]
        ]
    },
    {
        "id": "a163194f.0b17c8",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "sample_project",
        "label": "Name of the project*",
        "tooltip": "",
        "group": "3e1ba03d.f01d8",
        "order": 1,
        "width": 12,
        "height": 1,
        "passthru": true,
        "mode": "text",
        "delay": 300,
        "topic": "sample_project",
        "x": 1360,
        "y": 60,
        "wires": [
            [
                "1c2c7439.47115c"
            ]
        ]
    },
    {
        "id": "914752eb.af1b",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "sample_id",
        "label": "ID of the station*",
        "tooltip": "",
        "group": "3e1ba03d.f01d8",
        "order": 2,
        "width": 12,
        "height": 1,
        "passthru": true,
        "mode": "number",
        "delay": 300,
        "topic": "sample_id",
        "x": 1370,
        "y": 100,
        "wires": [
            [
                "30648de6.8ebc52"
            ]
        ]
    },
    {
        "id": "8a735175.23927",
        "type": "ui_date_picker",
        "z": "259c8713.b50e28",
        "name": "acq_date",
        "label": "Date :",
        "group": "52159161.72187",
        "order": 2,
        "width": 12,
        "height": 1,
        "passthru": true,
        "topic": "",
        "x": 1380,
        "y": 1141,
        "wires": [
            [
                "86aa9817.45a2e8"
            ]
        ]
    },
    {
        "id": "16d7de1c.b0c892",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "acq_time",
        "label": "Time :",
        "tooltip": "",
        "group": "52159161.72187",
        "order": 3,
        "width": 12,
        "height": 1,
        "passthru": true,
        "mode": "time",
        "delay": 300,
        "topic": "",
        "x": 1380,
        "y": 1181,
        "wires": [
            [
                "9b1b260f.e4b338"
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        ]
    },
    {
        "id": "9b1b260f.e4b338",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "set object_time",
        "func": "var time = new Date(msg.payload);\n\nvar hour = time.getUTCHours();\nif (hour<10){hour = \"0\"+hour;}\nvar minute = time.getUTCMinutes();\nif (minute<10){minute = \"0\"+minute;}\n\nvar time_UTC = \"\"+hour+minute+\"00\";\nglobal.set('object_time',time_UTC);\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1544,
        "y": 1181,
        "wires": [
            [
                "829cc940.327648"
            ]
        ]
    },
    {
        "id": "86aa9817.45a2e8",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "set object_date",
        "func": "var date = new Date(msg.payload);\n\nvar year = date.getUTCFullYear();\nvar month = date.getUTCMonth()+1;\nif (month<10){month = \"0\"+month;}\nvar day = date.getUTCDate();\nif (day<10){day = \"0\"+day;}\n\nvar date_UTC = \"\"+year+month+day;\nglobal.set('object_date',date_UTC);\n\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1544,
        "y": 1141,
        "wires": [
            [
                "c93577b9.a1e438"
            ]
        ]
    },
    {
        "id": "e001a28.555566",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "get global",
        "func": "msg.payload={\n    \n        \"generic_nb_step\":global.get(\"generic_nb_step\"),\n        \"generic_flowrate\":global.get(\"generic_flowrate\"),\n        \"generic_manual_volume\":global.get(\"generic_manual_volume\"),\n        \"generic_sleep_before\":global.get(\"generic_sleep_before\"),\n        \"generic_volume_before\":global.get(\"generic_volume_before\"),\n        \"generic_path\":global.get(\"generic_path\"),\n        \"generic_nb_frame\":global.get(\"generic_nb_frame\"),\n        \"generic_sleep_during\":global.get(\"generic_sleep_during\"),\n        \n        \"sample_project\":global.get(\"sample_project\"),\n        \"sample_id\":global.get(\"sample_id\"),\n        \"sample_ship\":global.get(\"sample_ship\"),\n        \"sample_operator\":global.get(\"sample_operator\"),\n        \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n        \n        \"acq_id\":global.get(\"acq_id\"),\n        \"acq_instrument\":global.get(\"acq_instrument\"),\n        //\"acq_instrument_id\":global.get(\"acq_instrument_id\"),\n        \"acq_celltype\":global.get(\"acq_celltype\"),\n        \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n        \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n        \"acq_min_esd\":global.get(\"acq_min_esd\"),\n        \"acq_max_esd\":global.get(\"acq_max_esd\"),\n        \"acq_volume\":global.get(\"acq_volume\"),\n        \"acq_magnification\":global.get(\"magnification\"),\n        \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n        \n        \"acq_camera_name\":\"Pi Camera V2.1 - 8MP\",\n        \n        \"object_date\":global.get(\"object_date\"),\n        \"object_time\":global.get(\"object_time\"),\n        \"object_lat\":global.get(\"object_lat\"),\n        \"object_lon\":global.get(\"object_lon\"),\n        \"object_depth_min\":global.get(\"object_depth_min\"),\n        \"object_depth_max\":global.get(\"object_depth_max\"),\n        \n        \"process_pixel\":global.get(\"process_pixel\"),\n        \"process_id\":global.get(\"process_id\")\n        \n};\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1880,
        "y": 60,
        "wires": [
            [
                "76a6e6bb.a08b98"
            ]
        ]
    },
    {
        "id": "f25890f5.f2549",
        "type": "file",
        "z": "259c8713.b50e28",
        "name": "",
        "filename": "/home/pi/PlanktonScope/config.txt",
        "appendNewline": true,
        "createDir": true,
        "overwriteFile": "true",
        "encoding": "none",
        "x": 2233,
        "y": 60,
        "wires": [
            []
        ]
    },
    {
        "id": "f5c1aa13.3cfbf8",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "set optical config",
        "func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n  case \"25\":\n    global.set(\"magnification\",0.6);\n    global.set(\"process_pixel\",1.86);\n    global.set(\"sug_min\",60);\n    global.set(\"sug_max\",670);\n    global.set(\"sug_flowrate\",3);\n    break;\n  case \"16\":\n    global.set(\"magnification\",0.94);\n    global.set(\"process_pixel\",1.19);\n    global.set(\"sug_min\",40);\n    global.set(\"sug_max\",430);\n    global.set(\"sug_flowrate\",2.4);\n    break;\n  case \"12\":\n    global.set(\"magnification\",1.20);\n    global.set(\"process_pixel\",0.94);\n    global.set(\"sug_min\",30);\n    global.set(\"sug_max\",340);\n    global.set(\"sug_flowrate\",1.25);\n    break;\n  case \"8\":\n    global.set(\"magnification\",1.78);\n    global.set(\"process_pixel\",0.63);\n    global.set(\"sug_min\",20);\n    global.set(\"sug_max\",230);\n    global.set(\"sug_flowrate\",0.42);\n    break;\n  case \"6\":\n    global.set(\"magnification\",2.36);\n    global.set(\"process_pixel\",0.48);\n    global.set(\"sug_min\",15);\n    global.set(\"sug_max\",170);\n    global.set(\"sug_flowrate\",0.32);\n    break;\n}\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1550,
        "y": 1041,
        "wires": [
            [
                "72e1e23b.a8a67c"
            ]
        ]
    },
    {
        "id": "eb9181d8.25e01",
        "type": "ui_dropdown",
        "z": "259c8713.b50e28",
        "name": "acq_fnumber_objective",
        "label": "M12 Lens*",
        "tooltip": "",
        "place": "Select option",
        "group": "52159161.72187",
        "order": 7,
        "width": 12,
        "height": 1,
        "passthru": true,
        "options": [
            {
                "label": "f 25mm 1/2\" 5MP IR",
                "value": 25,
                "type": "num"
            },
            {
                "label": "f 16mm 1/2.5\" 5MP IR",
                "value": 16,
                "type": "num"
            },
            {
                "label": "f 12mm 1/2.5\" 5MP IR",
                "value": 12,
                "type": "num"
            },
            {
                "label": "f 8mm 1/2.5\" 5MP IR",
                "value": 8,
                "type": "num"
            },
            {
                "label": "f 6mm 1/2.5\" 5MP IR",
                "value": 6,
                "type": "num"
            }
        ],
        "payload": "",
        "topic": "acq_fnumber_objective",
        "x": 1326,
        "y": 1041,
        "wires": [
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        ]
    },
    {
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        "type": "ui_numeric",
        "z": "259c8713.b50e28",
        "name": "acq_minimum_mesh",
        "label": "Min fraction size (μm)",
        "tooltip": "",
        "group": "52159161.72187",
        "order": 8,
        "width": 12,
        "height": 1,
        "wrap": false,
        "passthru": true,
        "topic": "acq_minimum_mesh",
        "format": "{{value}}",
        "min": 0,
        "max": "300",
        "step": "10",
        "x": 1336,
        "y": 841,
        "wires": [
            [
                "510bd72a.b42ea8"
            ]
        ]
    },
    {
        "id": "7cea16e.c42ace8",
        "type": "ui_numeric",
        "z": "259c8713.b50e28",
        "name": "acq_maximum_mesh",
        "label": "Max fraction size (μm)",
        "tooltip": "",
        "group": "52159161.72187",
        "order": 9,
        "width": 12,
        "height": 1,
        "wrap": false,
        "passthru": true,
        "topic": "acq_maximum_mesh",
        "format": "{{value}}",
        "min": "200",
        "max": "2000",
        "step": "100",
        "x": 1336,
        "y": 881,
        "wires": [
            [
                "a3f18257.8a55e"
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        ]
    },
    {
        "id": "6ecc9468.0271dc",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "acq_id",
        "label": "Acquisition unique ID*",
        "tooltip": "",
        "group": "52159161.72187",
        "order": 1,
        "width": 0,
        "height": 0,
        "passthru": true,
        "mode": "number",
        "delay": 300,
        "topic": "acq_id",
        "x": 1386,
        "y": 721,
        "wires": [
            [
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            ]
        ]
    },
    {
        "id": "259fd49a.160a3c",
        "type": "ui_dropdown",
        "z": "259c8713.b50e28",
        "name": "acq_celltype",
        "label": "Thickness flowcell*",
        "tooltip": "",
        "place": "Select option",
        "group": "52159161.72187",
        "order": 6,
        "width": 12,
        "height": 1,
        "passthru": true,
        "options": [
            {
                "label": "200 μm µ-Slide I Luer",
                "value": 200,
                "type": "num"
            },
            {
                "label": "400 μm µ-Slide I Luer",
                "value": 400,
                "type": "num"
            },
            {
                "label": "600 μm µ-Slide I Luer",
                "value": 600,
                "type": "num"
            },
            {
                "label": "800 μm µ-Slide I Luer",
                "value": 800,
                "type": "num"
            }
        ],
        "payload": "",
        "topic": "acq_celltype",
        "x": 1366,
        "y": 801,
        "wires": [
            [
                "d96d32ec.f88b9"
            ]
        ]
    },
    {
        "id": "66a3425c.79aabc",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "acq_volume",
        "label": "Volume to pass (ml)",
        "tooltip": "",
        "group": "52159161.72187",
        "order": 5,
        "width": 12,
        "height": 1,
        "passthru": true,
        "mode": "number",
        "delay": 300,
        "topic": "acq_volume",
        "x": 1366,
        "y": 921,
        "wires": [
            [
                "a3ec68a2.889ca8"
            ]
        ]
    },
    {
        "id": "6722bc48.d4f354",
        "type": "comment",
        "z": "259c8713.b50e28",
        "name": "sample",
        "info": "SAMPLE: a collection event\n\n    sample_id [t] : unique identifier\n    sample_*** [f] or [t] : other fields relative to the sample\n",
        "x": 810,
        "y": 60,
        "wires": []
    },
    {
        "id": "f93037f1.6a6238",
        "type": "comment",
        "z": "259c8713.b50e28",
        "name": "acquisition",
        "info": "ACQUISITION: metadata relative to the image acquisition\n\n    acq_id [t] : unique identifier. If your acquisition differ for each sample you must have different identifier.\n    acq_instrument [t] : name of the instrument (UVP, ZOOSCAN, FLOWCAM, etc.)\n    acq_*** [f] or [t] : other fields relative to the acquisition\n",
        "x": 800,
        "y": 720,
        "wires": []
    },
    {
        "id": "734ba3db.3f82fc",
        "type": "comment",
        "z": "259c8713.b50e28",
        "name": "object",
        "info": "OBJECT: one object to be classified, usually one organism. One object can be represented by several images. In this tsv file, there is one line per image which means the object data gets repeated on several lines.\n\n    object_id [t] : unique object name (will be displayed in Ecotaxa object page)\n    object_link [f] : URL of an associated website\n    object_lat [f] : latitude, decimal degrees\n    object_lon [f] : longitude, decimal degrees\n    object_date [f] : ISO8601 YYYYMMJJ UTC\n    object_time [f] : ISO8601 HHMMSS UTC\n    object_depth_min [f] : minimum depth of object, meters\n    object_depth_max [f] : maximum depth of object, meters\n\nAnd, for already classified objects\n\n    object_annotation_date [t] : ISO8601 YYYYMMJJ UTC\n    object_annotation_time [t] : ISO8601 YYYYMMJJ UTC\n    object_annotation_category [t] : class of the object with optionnaly its direct parent following separated by left angle bracket without whitespace \"Cnidaria<Hydrozoa\" or old style between brackets \"Cnidaria (Hydrozoa)\"\n    object_annotation_category_id [f] : Ecotaxa ID of the class of the object, generaly from an Ecotaxa export\n    object_annotation_person_name [t] : name of the person who identified the object\n    object_annotation_person_email [t] : email of the person who identified the object\n    object_annotation_status [t] : predicted, dubious, or validated\n",
        "x": 810,
        "y": 1140,
        "wires": []
    },
    {
        "id": "5866c9a4.e1ca88",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "acq_instrument",
        "label": "Acquisition instrument",
        "tooltip": "PlanktonScope V2.1",
        "group": "52159161.72187",
        "order": 4,
        "width": 12,
        "height": 1,
        "passthru": true,
        "mode": "text",
        "delay": 300,
        "topic": "acq_instrument",
        "x": 1356,
        "y": 761,
        "wires": [
            [
                "1d641ab3.6ad485"
            ]
        ]
    },
    {
        "id": "76a6e6bb.a08b98",
        "type": "json",
        "z": "259c8713.b50e28",
        "name": "",
        "property": "payload",
        "action": "str",
        "pretty": true,
        "x": 2023,
        "y": 60,
        "wires": [
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                "f25890f5.f2549"
            ]
        ]
    },
    {
        "id": "594ec843.9d4458",
        "type": "file in",
        "z": "259c8713.b50e28",
        "name": "",
        "filename": "/home/pi/PlanktonScope/config.txt",
        "format": "utf8",
        "chunk": false,
        "sendError": false,
        "encoding": "none",
        "x": 320,
        "y": 60,
        "wires": [
            [
                "3bc1a977.4e9c76"
            ]
        ]
    },
    {
        "id": "d9ca0e54.f8b58",
        "type": "inject",
        "z": "259c8713.b50e28",
        "name": "on_load",
        "topic": "",
        "payload": "",
        "payloadType": "date",
        "repeat": "",
        "crontab": "",
        "once": true,
        "onceDelay": 0.1,
        "x": 100,
        "y": 60,
        "wires": [
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                "594ec843.9d4458",
                "ca38a11d.0ee54"
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    },
    {
        "id": "3bc1a977.4e9c76",
        "type": "json",
        "z": "259c8713.b50e28",
        "name": "",
        "property": "payload",
        "action": "",
        "pretty": false,
        "x": 550,
        "y": 60,
        "wires": [
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        ]
    },
    {
        "id": "2582798f.eddcc6",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "get sample_projet",
        "func": "msg.payload = msg.payload.sample_project;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1030,
        "y": 60,
        "wires": [
            [
                "a163194f.0b17c8"
            ]
        ]
    },
    {
        "id": "1590a418.9166dc",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "get sample_ship",
        "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1020,
        "y": 140,
        "wires": [
            [
                "6d0d6fc7.d30bb"
            ]
        ]
    },
    {
        "id": "1d28205b.58a37",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "get sample_id",
        "func": "msg.payload = msg.payload.sample_id+1;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1020,
        "y": 100,
        "wires": [
            [
                "914752eb.af1b"
            ]
        ]
    },
    {
        "id": "d96f9fa3.d4cfc",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "get sample_operator",
        "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1040,
        "y": 180,
        "wires": [
            [
                "458408d7.2b3b68"
            ]
        ]
    },
    {
        "id": "784e2f78.9b96f",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "get sample_sampling_gear",
        "func": "msg.payload = msg.payload.sample_sampling_gear;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1060,
        "y": 220,
        "wires": [
            [
                "43b12fe4.c5aa3"
            ]
        ]
    },
    {
        "id": "47459dcd.81b594",
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        "links": [
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        "x": 1475,
        "y": 180,
        "wires": []
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        "type": "link out",
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        "x": 1475,
        "y": 220,
        "wires": []
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        "id": "767b43a1.de21dc",
        "type": "ui_worldmap",
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        "d": true,
        "group": "cef1e703.bcf3c8",
        "order": 1,
        "width": 0,
        "height": 0,
        "name": "",
        "lat": "1.5",
        "lon": "1.5",
        "zoom": "4",
        "layer": "OSM grey",
        "cluster": "1",
        "maxage": "",
        "usermenu": "hide",
        "layers": "hide",
        "panit": "false",
        "panlock": "false",
        "zoomlock": "false",
        "hiderightclick": "true",
        "coords": "deg",
        "showgrid": "false",
        "path": "/worldmap",
        "x": 1380,
        "y": 1221,
        "wires": []
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    {
        "id": "2327c165.8397ae",
        "type": "function",
        "z": "259c8713.b50e28",
        "name": "get object_lat & object_lon",
        "func": "\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1060,
        "y": 1221,
        "wires": [
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        "id": "fa47061e.34a218",
        "type": "ui_numeric",
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        "name": "acq_min_esd",
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        "group": "52159161.72187",
        "order": 10,
        "width": 12,
        "height": 1,
        "wrap": false,
        "passthru": true,
        "topic": "acq_min_esd",
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        "min": 0,
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        "x": 1366,
        "y": 961,
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        "width": 12,
        "height": 1,
        "wrap": false,
        "passthru": true,
        "topic": "acq_max_esd",
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        "x": 1475,
        "y": 1001,
        "wires": []
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        "tooltip": "",
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        "order": 3,
        "width": 8,
        "height": 1,
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    {
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        "type": "comment",
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        "name": "Focus settings",
        "info": "ACQUISITION: metadata relative to the image acquisition\n\n    acq_id [t] : unique identifier. If your acquisition differ for each sample you must have different identifier.\n    acq_instrument [t] : name of the instrument (UVP, ZOOSCAN, FLOWCAM, etc.)\n    acq_*** [f] or [t] : other fields relative to the acquisition\n",
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        "wires": []
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        "type": "function",
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        "name": "get generic_nb_step",
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        "noerr": 0,
        "x": 1040,
        "y": 341,
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        "id": "705dddc5.567bc4",
        "type": "ui_button",
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        "width": 6,
        "height": 1,
        "passthru": true,
        "label": "",
        "tooltip": "",
        "color": "",
        "bgcolor": "",
        "icon": "arrow_downward",
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        "payloadType": "str",
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        "y": 420,
        "wires": [
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        "id": "b0aacff7.56651",
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        "group": "fbd92986.1028c8",
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        "width": 6,
        "height": 1,
        "passthru": false,
        "label": "",
        "tooltip": "",
        "color": "",
        "bgcolor": "",
        "icon": "arrow_upwards",
        "payload": "UP",
        "payloadType": "str",
        "topic": "actuator/focus",
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        "y": 381,
        "wires": [
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    {
        "id": "1b9f457d.9be43b",
        "type": "ui_text_input",
        "z": "259c8713.b50e28",
        "name": "manual_volume",
        "label": "Volume to pass (ml)",
        "tooltip": "",
        "group": "707d9797.c8e798",
        "order": 3,
        "width": 8,
        "height": 1,
        "passthru": true,
        "mode": "number",
        "delay": 300,
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        "type": "function",
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        "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar manual_volume= global.get(\"manual_volume\");\nvar flowrate= global.get(\"flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Volume to pass\";\n    \n}else if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Flowrate\";\n    \n}else {\n    volume = global.get(\"manual_volume\");\n    nb_step=volume*507\n    msg.volume = volume;\n    flowrate = global.get(\"flowrate\");\n    duration=(volume*60)/flowrate\n    delay=(duration/nb_step)-0.005\n    msg.topic = \"actuator/pump\";\n    \n    if(msg.payload === \"FORWARD\" & state===\"free\"){\n        msg.payload='FORWARD '+delay+' '+nb_step;\n    }\n    if(msg.payload === \"BACKWARD\" & state===\"free\"){\n        msg.payload='BACKWARD '+delay+' '+nb_step;\n    }\n}\nreturn msg;",
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        "tooltip": "",
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        "icon": "arrow_back",
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        "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar nb_step= global.get(\"nb_step\");\n\nif (nb_step === undefined || nb_step === \"\" || nb_step === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Number of steps\";\n    \n}else {\n    nb_step= global.get(\"nb_step\");\n    if(msg.payload === \"UP\" & state===\"free\"){\n        msg.payload=\"FORWARD \"+nb_step;\n    }\n    if(msg.payload === \"DOWN\" & state===\"free\"){\n        msg.payload=\"BACKWARD \"+nb_step;\n    }\n}\nreturn msg;",
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        "noerr": 0,
        "x": 1520,
        "y": 400,
        "wires": [
            [
                "b7d9455c.026588"
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        ],
        "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n    python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
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        "type": "ui_button",
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        "width": 4,
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        "passthru": true,
        "label": "STOP FOCUS",
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        "bgcolor": "",
        "icon": "",
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        "order": 9,
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        "passthru": false,
        "label": "Reboot",
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        "color": "",
        "bgcolor": "#AD1625",
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        "id": "1f53f29b.feee4d",
        "type": "exec",
        "z": "259c8713.b50e28",
        "command": "sudo",
        "addpay": true,
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        "useSpawn": "false",
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        "name": "cmd",
        "x": 2370,
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        "wires": [
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        "order": 10,
        "width": 13,
        "height": 1,
        "passthru": false,
        "label": "Shutdown",
        "tooltip": "",
        "color": "",
        "bgcolor": "#AD1625",
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        "payload": "off",
        "payloadType": "str",
        "topic": "shutdown",
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        "type": "python3-function",
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        "name": "action",
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        "x": 2230,
        "y": 980,
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        "type": "exec",
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        "command": "i2cdetect -y 1",
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        "x": 2175,
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        "type": "mqtt in",
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        "topic": "receiver/#",
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            {
                "t": "eq",
                "v": "receiver/focus",
                "vt": "str"
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        "checkall": "true",
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            {
                "t": "eq",
                "v": "Interrompted",
                "vt": "str"
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            {
                "t": "eq",
                "v": "Interrompted",
                "vt": "str"
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        ],
        "checkall": "true",
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        "bgcolor": "",
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        "func": "msg.payload = msg.payload.generic_path;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1030,
        "y": 1440,
        "wires": [
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        "z": "259c8713.b50e28",
        "name": "get generic_nb_frame",
        "func": "msg.payload = msg.payload.generic_nb_frame;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1040,
        "y": 1480,
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        "z": "259c8713.b50e28",
        "name": "get generic_sleep_during",
        "func": "msg.payload = msg.payload.generic_sleep_during;\nreturn msg;",
        "outputs": 1,
        "noerr": 0,
        "x": 1050,
        "y": 1520,
        "wires": [
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        ]
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        "type": "link in",
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        "name": "image.js",
        "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar generic_sleep_before= global.get(\"generic_sleep_before\");\nvar generic_volume_before= global.get(\"generic_volume_before\");\nvar generic_path= global.get(\"generic_path\");\nvar generic_nb_frame= global.get(\"generic_nb_frame\");\nvar generic_sleep_during= global.get(\"generic_sleep_during\");\n\nif (generic_sleep_before === undefined || generic_sleep_before === \"\" || generic_sleep_before === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Duration before start the acquisition\";\n    \n}else if (generic_volume_before === undefined || generic_volume_before === \"\" || generic_volume_before === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Volume before acquisition\";\n    \n}else if (generic_path === undefined || generic_path === \"\" || generic_path === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Directory to store the images\";\n    \n}else if (generic_nb_frame === undefined || generic_nb_frame === \"\" || generic_nb_frame === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Number of frames per acquisition\";\n    \n}else if (generic_sleep_during === undefined || generic_sleep_during === \"\" || generic_sleep_during === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Duration in between each acquisition\";\n    \n}else {\n    generic_nb_step = 507*generic_volume_before\n    msg.payload=generic_sleep_before+' '+generic_nb_step+' '+generic_path+' '+generic_nb_frame+' '+generic_sleep_during;\n}\nreturn msg;",
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        ],
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        "cancel": "",
        "raw": false,
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    {
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        "type": "ui_group",
        "z": "",
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        "disp": true,
        "width": 24,
        "collapse": false
    },
    {
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        "type": "ui_group",
        "name": "Group 1",
        "tab": "737ec584.2eea2c",
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        "disp": true,
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    },
    {
        "id": "cef1e703.bcf3c8",
        "type": "ui_group",
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