1171 lines
33 KiB
JSON
1171 lines
33 KiB
JSON
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"id": "103f6179.d5012f",
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"type": "tab",
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"label": "Sample",
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"disabled": false,
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"info": ""
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},
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"type": "ui_text_input",
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"z": "103f6179.d5012f",
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"name": "sample_ship",
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"label": "Name of the ship",
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"tooltip": "",
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"group": "aac2eaf7.0cdab8",
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"order": 5,
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"passthru": true,
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"mode": "text",
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"delay": 300,
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"topic": "sample_ship",
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"x": 1170,
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"y": 100,
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"wires": [
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},
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{
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"id": "8f3a0dab.4d614",
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"type": "ui_dropdown",
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"z": "103f6179.d5012f",
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"name": "sample_sampling_gear",
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"label": "Sampling gear",
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"tooltip": "",
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"place": "Select",
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"group": "aac2eaf7.0cdab8",
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"order": 7,
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"width": 0,
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"height": 0,
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"passthru": true,
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"options": [
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{
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"label": "Plankton net",
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"value": "net",
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"type": "str"
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},
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{
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"label": "Niskin bottle 12L",
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"value": "niskin_12L",
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"type": "str"
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},
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{
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"label": "Niskin bottle 24L",
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"value": "niskin_24L",
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"type": "str"
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},
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{
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"label": "Pass Hull",
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"value": "pass_hull",
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"type": "str"
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}
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],
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"payload": "",
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"topic": "sample_sampling_gear",
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"x": 1130,
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"y": 220,
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"wires": [
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},
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{
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"id": "e046b933.316b28",
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"type": "ui_text_input",
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"z": "103f6179.d5012f",
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"name": "sample_operator",
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"label": "Name of the operator",
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"tooltip": "",
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"group": "aac2eaf7.0cdab8",
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"order": 6,
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"width": 0,
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"height": 0,
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"passthru": true,
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"mode": "text",
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"delay": 300,
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"topic": "sample_operator",
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"x": 1150,
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"y": 180,
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"wires": [
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},
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{
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"id": "2ff04681.e99aea",
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"type": "ui_text_input",
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"z": "103f6179.d5012f",
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"name": "sample_project",
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"label": "Name of the project*",
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"tooltip": "",
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"group": "aac2eaf7.0cdab8",
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"order": 1,
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"passthru": true,
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"mode": "text",
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"delay": 300,
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"topic": "sample_project",
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"x": 1160,
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"y": 60,
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"type": "ui_text_input",
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"z": "103f6179.d5012f",
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"name": "sample_id",
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"label": "ID of the station*",
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"tooltip": "",
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"group": "aac2eaf7.0cdab8",
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"order": 2,
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"passthru": true,
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"mode": "number",
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"delay": 300,
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"topic": "sample_id",
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"x": 1170,
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"y": 140,
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"wires": [
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},
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{
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"id": "b77eb8b0.a222a8",
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"type": "ui_date_picker",
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"z": "103f6179.d5012f",
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"name": "acq_date",
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"label": "Date :",
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"group": "aac2eaf7.0cdab8",
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"order": 10,
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"width": 0,
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"height": 0,
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"passthru": true,
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"topic": "",
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"x": 1176,
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},
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"id": "86d5ed81.6dc99",
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"type": "ui_text_input",
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"z": "103f6179.d5012f",
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"name": "acq_time",
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"label": "Time :",
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"tooltip": "",
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"group": "aac2eaf7.0cdab8",
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"order": 11,
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"passthru": true,
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"mode": "time",
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"topic": "",
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},
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{
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"id": "26461e30.b461b2",
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"type": "function",
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"z": "103f6179.d5012f",
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"name": "set time global",
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"func": "var time = new Date(msg.payload);\nglobal.set('generic_acq_time',time);\n\nvar hour = time.getUTCHours();\nif (hour<10){hour = \"0\"+hour;}\nvar minute = time.getUTCMinutes();\nif (minute<10){minute = \"0\"+minute;}\n\nvar time_UTC = \"\"+hour+minute+\"00\";\nglobal.set('object_time',time_UTC);\nreturn msg;",
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"outputs": 1,
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"noerr": 0,
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"x": 1396,
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"y": 680,
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"type": "function",
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"z": "103f6179.d5012f",
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"name": "set date global",
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"func": "var date = new Date(msg.payload);\nglobal.set('generic_acq_date',date);\n\nvar year = date.getUTCFullYear();\nvar month = date.getUTCMonth()+1;\nif (month<10){month = \"0\"+month;}\nvar day = date.getUTCDate();\nif (day<10){day = \"0\"+day;}\n\nvar date_UTC = \"\"+year+month+day;\nglobal.set('object_date',date_UTC);\n\nreturn msg;",
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"outputs": 1,
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"noerr": 0,
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"x": 1396,
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"y": 640,
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},
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{
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"id": "da16d746.4b12e8",
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"type": "function",
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"z": "103f6179.d5012f",
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"name": "get global",
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"func": "msg.payload={\n generic:{\n \"generic_sample_date\":global.get(\"generic_sample_date\"),\n \"generic_sample_time\":global.get(\"generic_sample_time\"),\n \"generic_acq_date\":global.get(\"generic_acq_date\"),\n \"generic_acq_time\":global.get(\"generic_acq_time\")\n },\n sample:{\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_date\":global.get(\"sample_date\"),\n \"sample_time\":global.get(\"sample_time\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\")\n },\n acquisition:{\n \"acq_id\":global.get(\"acq_id\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_magnification\":global.get(\"magnification\")\n },\n object:{\n \"object_date\":global.get(\"object_date\"),\n \"object_time\":global.get(\"object_time\"),\n \"object_depth_min\":global.get(\"object_depth_min\"),\n \"object_depth_max\":global.get(\"object_depth_max\")\n \n },\n process:{\n //PROCESS\n \"process_pixel\":global.get(\"process_pixel\"),\n \"process_id\":global.get(\"process_id\")\n }\n};\nreturn msg;",
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"outputs": 1,
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"noerr": 0,
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"x": 1693,
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"y": 60,
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"wires": [
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},
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{
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"id": "6dd1657e.c52e4c",
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"type": "file",
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"z": "103f6179.d5012f",
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"name": "",
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"filename": "/home/pi/PlanktonScope/log/config.txt",
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"appendNewline": true,
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"createDir": true,
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"overwriteFile": "true",
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"encoding": "none",
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"x": 2043,
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"y": 60,
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"id": "3a43748d.52464c",
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"type": "function",
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"z": "103f6179.d5012f",
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"name": "set optical config",
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"func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n global.set(\"magnification\",0.6);\n global.set(\"process_pixel\",1.86);\n global.set(\"sug_min\",60);\n global.set(\"sug_max\",670);\n global.set(\"sug_flowrate\",3);\n break;\n case \"16\":\n global.set(\"magnification\",0.94);\n global.set(\"process_pixel\",1.19);\n global.set(\"sug_min\",40);\n global.set(\"sug_max\",430);\n global.set(\"sug_flowrate\",2.4);\n break;\n case \"12\":\n global.set(\"magnification\",1.20);\n global.set(\"process_pixel\",0.94);\n global.set(\"sug_min\",30);\n global.set(\"sug_max\",340);\n global.set(\"sug_flowrate\",1.25);\n break;\n case \"8\":\n global.set(\"magnification\",1.78);\n global.set(\"process_pixel\",0.63);\n global.set(\"sug_min\",20);\n global.set(\"sug_max\",230);\n global.set(\"sug_flowrate\",0.42);\n break;\n case \"6\":\n global.set(\"magnification\",2.36);\n global.set(\"process_pixel\",0.48);\n global.set(\"sug_min\",15);\n global.set(\"sug_max\",170);\n global.set(\"sug_flowrate\",0.32);\n break;\n}\nreturn msg;",
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"outputs": 1,
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"noerr": 0,
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"x": 1386,
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"y": 720,
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"type": "ui_dropdown",
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"z": "103f6179.d5012f",
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"name": "acq_fnumber_objective",
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"label": "M12 Lens*",
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"tooltip": "",
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"place": "Select option",
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"group": "aac2eaf7.0cdab8",
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"order": 15,
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"passthru": true,
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"options": [
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{
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"label": "f 25mm 1/2\" 5MP IR",
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"value": 25,
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"type": "num"
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},
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{
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"label": "f 16mm 1/2.5\" 5MP IR",
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"value": 16,
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"type": "num"
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},
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{
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"label": "f 12mm 1/2.5\" 5MP IR",
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"value": 12,
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"type": "num"
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},
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{
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||
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"label": "f 8mm 1/2.5\" 5MP IR",
|
||
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"value": 8,
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"type": "num"
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},
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{
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||
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"label": "f 6mm 1/2.5\" 5MP IR",
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"value": 6,
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"type": "num"
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||
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}
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],
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"payload": "",
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"topic": "acq_fnumber_objective",
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"type": "ui_numeric",
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"z": "103f6179.d5012f",
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"name": "acq_minimum_mesh",
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"label": "Min fraction size (μm)",
|
||
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"tooltip": "",
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"group": "aac2eaf7.0cdab8",
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"order": 16,
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"wrap": false,
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"passthru": true,
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"topic": "acq_minimum_mesh",
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"format": "{{value}}",
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||
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"min": 0,
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||
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"max": "300",
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"step": "10",
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"wrap": false,
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"passthru": true,
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"format": "{{value}}",
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"min": "200",
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"max": "2000",
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"step": "100",
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"label": "Acquisition unique ID*",
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"tooltip": "",
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"order": 9,
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"place": "Select option",
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"label": "200 μm µ-Slide I Luer",
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"value": 200,
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"type": "num"
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"label": "400 μm µ-Slide I Luer",
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"value": 400,
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"type": "num"
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},
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{
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"label": "600 μm µ-Slide I Luer",
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"value": 600,
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"type": "num"
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},
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{
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"label": "800 μm µ-Slide I Luer",
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"value": 800,
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"name": "acq_volume",
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"label": "Volume to pass (ml)",
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"tooltip": "",
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"group": "aac2eaf7.0cdab8",
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|
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"order": 14,
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"width": 0,
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"height": 0,
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"passthru": true,
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"mode": "number",
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"delay": 300,
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"topic": "acq_volume",
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"y": 600,
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"z": "103f6179.d5012f",
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"name": "sample",
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"info": "SAMPLE: a collection event\n\n sample_id [t] : unique identifier\n sample_*** [f] or [t] : other fields relative to the sample\n",
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"x": 990,
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"y": 20,
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"z": "103f6179.d5012f",
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"name": "acquisition",
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|
|
"info": "ACQUISITION: metadata relative to the image acquisition\n\n acq_id [t] : unique identifier. If your acquisition differ for each sample you must have different identifier.\n acq_instrument [t] : name of the instrument (UVP, ZOOSCAN, FLOWCAM, etc.)\n acq_*** [f] or [t] : other fields relative to the acquisition\n",
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"x": 996,
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"y": 360,
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"z": "103f6179.d5012f",
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"name": "object",
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"info": "OBJECT: one object to be classified, usually one organism. One object can be represented by several images. In this tsv file, there is one line per image which means the object data gets repeated on several lines.\n\n object_id [t] : unique object name (will be displayed in Ecotaxa object page)\n object_link [f] : URL of an associated website\n object_lat [f] : latitude, decimal degrees\n object_lon [f] : longitude, decimal degrees\n object_date [f] : ISO8601 YYYYMMJJ UTC\n object_time [f] : ISO8601 HHMMSS UTC\n object_depth_min [f] : minimum depth of object, meters\n object_depth_max [f] : maximum depth of object, meters\n\nAnd, for already classified objects\n\n object_annotation_date [t] : ISO8601 YYYYMMJJ UTC\n object_annotation_time [t] : ISO8601 YYYYMMJJ UTC\n object_annotation_category [t] : class of the object with optionnaly its direct parent following separated by left angle bracket without whitespace \"Cnidaria<Hydrozoa\" or old style between brackets \"Cnidaria (Hydrozoa)\"\n object_annotation_category_id [f] : Ecotaxa ID of the class of the object, generaly from an Ecotaxa export\n object_annotation_person_name [t] : name of the person who identified the object\n object_annotation_person_email [t] : email of the person who identified the object\n object_annotation_status [t] : predicted, dubious, or validated\n",
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"x": 990,
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"delay": 300,
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|
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},
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{
|
||
|
|
"id": "aea5add7.8d777",
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||
|
|
"type": "function",
|
||
|
|
"z": "103f6179.d5012f",
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"name": "get acq_id",
|
||
|
|
"func": "msg.payload = msg.payload.acquisition.acq_id+1;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
|
||
|
|
"x": 802,
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||
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|
"y": 400,
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"wires": [
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},
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||
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|
"id": "e98fdfdf.3bb2b",
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||
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|
"type": "function",
|
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|
|
"z": "103f6179.d5012f",
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|
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"name": "get acq_instrument",
|
||
|
|
"func": "msg.payload = msg.payload.acquisition.acq_instrument;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
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||
|
|
"x": 822,
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"y": 440,
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"wires": [
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},
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{
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|
"id": "5d8717fe.46fe28",
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|
|
"type": "function",
|
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|
|
"z": "103f6179.d5012f",
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||
|
|
"name": "get acq_celltype",
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||
|
|
"func": "msg.payload = msg.payload.acquisition.acq_celltype;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
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||
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|
"x": 812,
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||
|
|
"y": 480,
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"wires": [
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},
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{
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|
|
"id": "13145f4f.268691",
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|
|
"type": "function",
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|
"z": "103f6179.d5012f",
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"name": "get acq_minimum_mesh",
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|
|
"func": "msg.payload = msg.payload.acquisition.acq_minimum_mesh;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
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||
|
|
"x": 842,
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|
"y": 520,
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|
"wires": [
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},
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{
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|
"id": "77595474.1d1dbc",
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|
"type": "function",
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|
"z": "103f6179.d5012f",
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"name": "get acq_maximum_mesh",
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||
|
|
"func": "msg.payload = msg.payload.acquisition.acq_maximum_mesh;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
|
||
|
|
"x": 842,
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||
|
|
"y": 560,
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||
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|
"wires": [
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||
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|
},
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||
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{
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||
|
|
"id": "59524c4.aaa65b4",
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||
|
|
"type": "function",
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||
|
|
"z": "103f6179.d5012f",
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|
|
"name": "get acq_volume",
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||
|
|
"func": "msg.payload = msg.payload.acquisition.acq_volume;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
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||
|
|
"x": 812,
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||
|
|
"y": 600,
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||
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|
"wires": [
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||
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|
},
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||
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|
{
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||
|
|
"id": "1dee3edf.26ffd1",
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||
|
|
"type": "function",
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||
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|
"z": "103f6179.d5012f",
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|
|
"name": "get generic_acq_date",
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|
|
"func": "msg.payload = msg.payload.generic.generic_acq_date;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
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||
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|
"x": 832,
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||
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|
"y": 640,
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||
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"wires": [
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},
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{
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||
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|
"id": "60af72f2.481a2c",
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|
"type": "function",
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|
"z": "103f6179.d5012f",
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"name": "get generic_acq_time",
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|
|
"func": "msg.payload = msg.payload.generic.generic_acq_time;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
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||
|
|
"x": 832,
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|
"y": 680,
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"wires": [
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},
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|
"id": "19f46aca.503c45",
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"type": "function",
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|
"z": "103f6179.d5012f",
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"name": "get acq_fnumber_objective",
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|
"func": "msg.payload = msg.payload.acquisition.acq_fnumber_objective;\nreturn msg;",
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|
|
"outputs": 1,
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||
|
|
"noerr": 0,
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||
|
|
"x": 852,
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|
"y": 720,
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"wires": [
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},
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|
"id": "17cad370.a4054d",
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"type": "function",
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|
"z": "103f6179.d5012f",
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"name": "get generic_sample_date",
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|
"func": "msg.payload = msg.payload.generic.generic_sample_date;\nreturn msg;",
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|
|
"outputs": 1,
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||
|
|
"noerr": 0,
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"x": 846,
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|
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|
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|
"noerr": 0,
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},
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|
"name": "sample_time",
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|
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|
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|
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|
"order": 4,
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"passthru": true,
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|
"mode": "time",
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{
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"type": "ui_date_picker",
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"name": "sample_date",
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|
"label": "Date :",
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|
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"order": 3,
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||
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"func": "var date = new Date(msg.payload);\nglobal.set('generic_sample_date',date);\n\nvar year = date.getUTCFullYear();\nvar month = date.getUTCMonth()+1;\nif (month<10){month = \"0\"+month;}\nvar day = date.getUTCDate();\nif (day<10){day = \"0\"+day;}\n\nvar date_UTC = \"\"+year+month+day;\nglobal.set('sample_date',date_UTC);\n\nreturn msg;",
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|
"outputs": 1,
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|
"noerr": 0,
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"x": 1400,
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"name": "set time global",
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||
|
|
"func": "var time = new Date(msg.payload);\nglobal.set('generic_sample_time',time);\n\nvar hour = time.getUTCHours();\nif (hour<10){hour = \"0\"+hour;}\nvar minute = time.getUTCMinutes();\nif (minute<10){minute = \"0\"+minute;}\n\nvar time_UTC = \"\"+hour+minute+\"00\";\nglobal.set('sample_time',time_UTC);\nreturn msg;",
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||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
|
||
|
|
"x": 1400,
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{
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|
|
"id": "ae0b204a.0bd38",
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||
|
|
"type": "ui_numeric",
|
||
|
|
"z": "103f6179.d5012f",
|
||
|
|
"name": "object_depth_min",
|
||
|
|
"label": "Minimum depth (m)",
|
||
|
|
"tooltip": "",
|
||
|
|
"group": "aac2eaf7.0cdab8",
|
||
|
|
"order": 18,
|
||
|
|
"width": 0,
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"height": 0,
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||
|
|
"wrap": false,
|
||
|
|
"passthru": true,
|
||
|
|
"topic": "object_depth_min",
|
||
|
|
"format": "{{value}}",
|
||
|
|
"min": "0",
|
||
|
|
"max": "2000",
|
||
|
|
"step": "1",
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|
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},
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|
{
|
||
|
|
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||
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|
"type": "ui_numeric",
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||
|
|
"z": "103f6179.d5012f",
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||
|
|
"name": "object_depth_max",
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||
|
|
"label": "Maximum depth (m)",
|
||
|
|
"tooltip": "",
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||
|
|
"group": "aac2eaf7.0cdab8",
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||
|
|
"order": 19,
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|
|
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"height": 0,
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||
|
|
"wrap": false,
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||
|
|
"passthru": true,
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||
|
|
"topic": "object_depth_max",
|
||
|
|
"format": "{{value}}",
|
||
|
|
"min": "0",
|
||
|
|
"max": "2000",
|
||
|
|
"step": "1",
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||
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|
"x": 1146,
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|
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},
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"id": "451237c0.9d76e8",
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|
"type": "function",
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||
|
|
"z": "103f6179.d5012f",
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|
|
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|
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|
|
"outputs": 1,
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|
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|
|
"x": 1416,
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|
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"y": 840,
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},
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|
||
|
|
"outputs": 1,
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|
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"noerr": 0,
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|
|
"x": 836,
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"y": 840,
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|
},
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|
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|
|
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|
|
"z": "103f6179.d5012f",
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|
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|
|
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|
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|
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|
|
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|
"delay": 300,
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|
|
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|
|
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"z": "103f6179.d5012f",
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||
|
|
"name": "process",
|
||
|
|
"info": "PROCESS: metadata relative to the processing of the raw images\n\n process_id [t] : unique identifier. If your processing differ for each sample you must have different identifier.\n process_*** [f] or [t] : other fields relative to the process\n",
|
||
|
|
"x": 990,
|
||
|
|
"y": 940,
|
||
|
|
"wires": []
|
||
|
|
},
|
||
|
|
{
|
||
|
|
"id": "a7f7c424.d9d848",
|
||
|
|
"type": "function",
|
||
|
|
"z": "103f6179.d5012f",
|
||
|
|
"name": "get process_id",
|
||
|
|
"func": "msg.payload = msg.payload.process.process_id+1;\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
|
||
|
|
"x": 820,
|
||
|
|
"y": 980,
|
||
|
|
"wires": [
|
||
|
|
[
|
||
|
|
"ab2b4bd0.b89d58"
|
||
|
|
]
|
||
|
|
]
|
||
|
|
},
|
||
|
|
{
|
||
|
|
"id": "4058069.0618ff8",
|
||
|
|
"type": "function",
|
||
|
|
"z": "103f6179.d5012f",
|
||
|
|
"name": "set global",
|
||
|
|
"func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);\nreturn msg;",
|
||
|
|
"outputs": 1,
|
||
|
|
"noerr": 0,
|
||
|
|
"x": 1420,
|
||
|
|
"y": 980,
|
||
|
|
"wires": [
|
||
|
|
[
|
||
|
|
"da16d746.4b12e8"
|
||
|
|
]
|
||
|
|
]
|
||
|
|
},
|
||
|
|
{
|
||
|
|
"id": "1e070d2.86cd6f3",
|
||
|
|
"type": "watch",
|
||
|
|
"z": "103f6179.d5012f",
|
||
|
|
"name": "",
|
||
|
|
"files": "/home/pi/PlanktonScope/log/config.txt",
|
||
|
|
"recursive": "",
|
||
|
|
"x": 210,
|
||
|
|
"y": 440,
|
||
|
|
"wires": [
|
||
|
|
[]
|
||
|
|
]
|
||
|
|
},
|
||
|
|
{
|
||
|
|
"id": "75de7b34.cd7394",
|
||
|
|
"type": "comment",
|
||
|
|
"z": "103f6179.d5012f",
|
||
|
|
"name": "config.txt has been modified",
|
||
|
|
"info": "",
|
||
|
|
"x": 170,
|
||
|
|
"y": 400,
|
||
|
|
"wires": []
|
||
|
|
},
|
||
|
|
{
|
||
|
|
"id": "aac2eaf7.0cdab8",
|
||
|
|
"type": "ui_group",
|
||
|
|
"name": "Group 1",
|
||
|
|
"tab": "683b12ac.25a51c",
|
||
|
|
"order": 1,
|
||
|
|
"disp": true,
|
||
|
|
"width": 12
|
||
|
|
},
|
||
|
|
{
|
||
|
|
"id": "683b12ac.25a51c",
|
||
|
|
"type": "ui_tab",
|
||
|
|
"name": "Tab 1",
|
||
|
|
"icon": "dashboard",
|
||
|
|
"order": 1
|
||
|
|
}
|
||
|
|
]
|