updated page config and added meta data

mkdocs.yml

@@ -6,19 +6,20 @@ site_description: An open and affordable imaging platform for \
   citizen oceanography
 site_url: https://planktoscope.curious.bio/
 repo_name: PlanktoScope
-repo_url: https://code.curious.bio/curious.bio/planktoscope
+repo_url: https://github.com/PlanktoScope/PlanktoScope
 
 nav:
-  - Introduction:
+  - Home: index.md
-      - General: introduction/introduction.md
+  # - Introduction:
-      - Device Specifications: introduction/device_specification.md
+  #     - General: introduction/introduction.md
   - Research: introduction/research.md
   - Hardware:
-      - Manufacturing: hardware/manufacturing.md
+      - Device Specifications: introduction/device_specification.md
-      - Supply Chain: hardware/supply_chain.md
+      # - Manufacturing: hardware/manufacturing.md
+      # - Supply Chain: hardware/supply_chain.md
       - Assembly Guide: hardware/assembly_guide.md
-      - Maintenance and repair: hardware/maintenance_repair.md
+      # - Maintenance and repair: hardware/maintenance_repair.md
-      - Disposal and recycling: hardware/disposal_recycling.md
+      # - Disposal and recycling: hardware/disposal_recycling.md
       - Planktoscope HAT: hardware/hat_hardware.md
       - Collection devices: hardware/collection_devices.md
   - Software:
@@ -31,26 +32,25 @@ nav:
       - User Interface: usage/ui_guide.md
       - Remote Access: usage/remote_access.md
       - MQTT Messages: usage/mqtt_messages.md
-  - Protocols:
+  # - Protocols:
-      - Basic Primer: protocols/basic_primer.md
+  #     - Basic Primer: protocols/basic_primer.md
-  - FAQ: faq.md
+  # - FAQ: faq.md
   - Contribute:
-      - Development Workflow: contribute/development_workflow.md
+      - Github Workflow: contribute/github_workflow.md
       - Hardware Development: contribute/hardware_development.md
       - Software Development: contribute/software_development.md
-      - Software architecture: contribute/software_architecture.md
       - Writing Documentation: contribute/writing_documentation.md
   - Community:
-      - Getting in touch: community/community.md
+      - Getting in touch: community/getting_in_touch.md
-      - Trainer: community/trainer.md
+      # - Trainer: community/trainer.md
       - Code of Conduct: community/code_of_conduct.md
-  - Funding: funding.md
+  # - Funding: funding.md
   - License: license.md
   - Changelog: changelog.md
 
 theme:
   logo: images/logos/planktoscope_white.png
-  locale: en
+  language: en
   name: material
   font:
     text: Roboto
@@ -80,28 +80,22 @@ theme:
 
 plugins:
   - glightbox
-  - charts
+  - minify:
-  # - table-reader
+      minify_html: true
 
 markdown_extensions:
   - admonition
   - attr_list
   - md_in_html
-  - sane_lists
-  - smarty
   - tables
   - toc:
       permalink: true
-  - pymdownx.pathconverter
   - pymdownx.details
   - pymdownx.superfences:
       custom_fences:
         - name: mermaid
           class: mermaid
           format: !!python/name:pymdownx.superfences.fence_code_format
-        - name: vegalite
-          class: vegalite
-          format: !!python/name:mkdocs_charts_plugin.fences.fence_vegalite
   - pymdownx.emoji:
       emoji_index: !!python/name:materialx.emoji.twemoji
       emoji_generator: !!python/name:materialx.emoji.to_svg
@@ -112,12 +106,18 @@ markdown_extensions:
       custom_checkbox: true
 
 extra:
+  homepage: https://www.planktoscope.org/
+  social:
+    - icon: fontawesome/brands/github-alt
+      link: https://github.com/PlanktoScope
+    - icon: fontawesome/brands/slack
+      link: https://planktoscope.slack.com
+    - icon: fontawesome/brands/twitter
+      link: https://twitter.com/ThibautPollina
   generator: false
 
 extra_css:
   - stylesheets/extra.css
 
-extra_javascript:
+copyright: >
-  - https://cdn.jsdelivr.net/npm/vega@5
+  Copyright © 2022
-  - https://cdn.jsdelivr.net/npm/vega-lite@5
-  - https://cdn.jsdelivr.net/npm/vega-embed@6