Add files via upload

scripts/image.py

@@ -11,22 +11,13 @@ from datetime import datetime, timedelta
 import os
 import sys
 
-in_path = str(sys.argv[1])
-
-#[t] : ex:tara_pacific
-sample_project = str(sys.argv[2])
-
-#[t] : unique identifier
-sample_id = str(sys.argv[3])
-
-#[t] : unique identifier
-acq_id = str(sys.argv[4])
+path=str(sys.argv[1])
 
 #[i] : ex:24ml
-volume = 24
+volume=int(sys.argv[2])
 
 #[f] : ex:3.2ml/min
-flowrate = float(sys.argv[5])
+flowrate = float(sys.argv[3])
 
 warm_up_duration=3
 
@@ -35,8 +26,6 @@ duration = (volume/flowrate)*60 - warm_up_duration
 max_fps = 0.7
 
 nb_frame = int(duration/max_fps)
-
-path= in_path+sample_project+"/"+sample_id+"/"+acq_id+"/"
     
 if not os.path.exists(path):
     os.makedirs(path)

scripts/kill_image.sh

@@ -1,15 +1,11 @@
 #!/bin/bash    
 
 #In order to kill an on going acquisition, type this command
-#bash $HOME/PlanktonScope/scripts/kill_image.sh image.py sample_project sample_id acq_id
+#bash $HOME/PlanktonScope/scripts/kill_image.sh image.py in_path sample_project sample_id acq_id
 
-in_path=$1
-sample_project=$2
-sample_id=$3
-acq_id=$4
+path=$1
 
+kill -9 `ps ax | grep "image.py" | head -1 | awk '{print $1}'`
 kill -9 `ps ax | grep "image.py" | head -1 | awk '{print $1}'`
 
-rm -r $in_path/$sample_project/$sample_id/$acq_id
-bash $HOME/RPi_Cam_Web_Interface/start.sh
-
+rm -r $path

scripts/pump.py

@@ -22,9 +22,9 @@ pump_stepper.release()
 def pump(volume, flowrate, action):
     
     if action == "foward":
-        action=stepper.FORWARD
-    if action == "backward":
         action=stepper.BACKWARD
+    if action == "backward":
+        action=stepper.FORWARD
         
     nb_step=volume*507 #if sleep(0.05) in between 2 steps
     #35000steps for 69g