flow: add mL to concentrated sample volume and add process_description field to metadata
This commit is contained in:
parent
981dd12646
commit
68d2a10303
178
flows/main.json
178
flows/main.json
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@ -1837,7 +1837,7 @@
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@ -1941,7 +1941,7 @@
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@ -2591,8 +2591,8 @@
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@ -3522,7 +3522,7 @@
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"type": "function",
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"name": "Encapsulate config",
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"func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\n\t\t\"acq_id\": global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_magnification\": global.get(\"magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera_name\": global.get(\"acq_camera_name\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_id\": global.get(\"process_id\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear == \"net\") {\n\tmsg.payload.config = { ...msg.payload.config ,\n\t\t\t\"sample_gear_net_opening\": global.get(\"sample_gear_net_opening\"),\n\t\t\t\"object_date_end\": global.get(\"object_date_end\"),\n\t\t\t\"object_time_end\": global.get(\"object_time_end\"),\n\t\t\t\"object_lat_end\": global.get(\"object_lat_end\"),\n\t\t\t\"object_lon_end\": global.get(\"object_lon_end\")\n\t};\n}\nreturn msg;",
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"func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\n\t\t\"acq_id\": global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_magnification\": global.get(\"magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera_name\": global.get(\"acq_camera_name\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_id\": global.get(\"process_id\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear == \"net\") {\n\tmsg.payload.config = { ...msg.payload.config ,\n\t\t\t\"sample_gear_net_opening\": global.get(\"sample_gear_net_opening\"),\n\t\t\t\"object_date_end\": global.get(\"object_date_end\"),\n\t\t\t\"object_time_end\": global.get(\"object_time_end\"),\n\t\t\t\"object_lat_end\": global.get(\"object_lat_end\"),\n\t\t\t\"object_lon_end\": global.get(\"object_lon_end\")\n\t};\n}\nreturn msg;",
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"type": "function",
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"z": "b771c342.49603",
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"name": "get sample_sampling_gear",
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"func": "msg.payload = msg.payload.sample_sampling_gear;\nreturn msg;",
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"func": "if (msg.payload.sample_sampling_gear === null){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;",
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]
|
||||
|
@ -4202,8 +4204,8 @@
|
|||
"d": true,
|
||||
"name": "GPS Status",
|
||||
"scope": [],
|
||||
"x": 310,
|
||||
"y": 1500,
|
||||
"x": 190,
|
||||
"y": 1080,
|
||||
"wires": [
|
||||
[
|
||||
"7116e906.9f50f"
|
||||
|
@ -4223,8 +4225,8 @@
|
|||
"label": "GPS Status:",
|
||||
"format": "{{msg.status.text}}",
|
||||
"layout": "row-left",
|
||||
"x": 810,
|
||||
"y": 1500,
|
||||
"x": 690,
|
||||
"y": 1080,
|
||||
"wires": []
|
||||
},
|
||||
{
|
||||
|
@ -4356,7 +4358,7 @@
|
|||
"label": "Object depth Max",
|
||||
"tooltip": "",
|
||||
"group": "3e1ba03d.f01d8",
|
||||
"order": 7,
|
||||
"order": 8,
|
||||
"width": 5,
|
||||
"height": 1,
|
||||
"passthru": true,
|
||||
|
@ -4364,7 +4366,7 @@
|
|||
"delay": "1000",
|
||||
"topic": "object_depth_max",
|
||||
"x": 650,
|
||||
"y": 540,
|
||||
"y": 280,
|
||||
"wires": [
|
||||
[
|
||||
"9f501f49.45645"
|
||||
|
@ -4379,7 +4381,7 @@
|
|||
"label": "Object Depth Min",
|
||||
"tooltip": "",
|
||||
"group": "3e1ba03d.f01d8",
|
||||
"order": 6,
|
||||
"order": 7,
|
||||
"width": 5,
|
||||
"height": 1,
|
||||
"passthru": true,
|
||||
|
@ -4387,7 +4389,7 @@
|
|||
"delay": "1000",
|
||||
"topic": "object_depth_min",
|
||||
"x": 650,
|
||||
"y": 580,
|
||||
"y": 320,
|
||||
"wires": [
|
||||
[
|
||||
"9f501f49.45645"
|
||||
|
@ -5108,7 +5110,7 @@
|
|||
"35eb925e.5f8016"
|
||||
],
|
||||
"x": 815,
|
||||
"y": 420,
|
||||
"y": 160,
|
||||
"wires": []
|
||||
},
|
||||
{
|
||||
|
@ -5507,7 +5509,7 @@
|
|||
"repair": false,
|
||||
"outputs": 2,
|
||||
"x": 1090,
|
||||
"y": 420,
|
||||
"y": 160,
|
||||
"wires": [
|
||||
[
|
||||
"66b362ee.80b5b4"
|
||||
|
@ -5544,7 +5546,7 @@
|
|||
"to": "",
|
||||
"reg": false,
|
||||
"x": 1290,
|
||||
"y": 400,
|
||||
"y": 140,
|
||||
"wires": [
|
||||
[
|
||||
"cbb123ab.fd3428"
|
||||
|
@ -5578,7 +5580,7 @@
|
|||
"to": "",
|
||||
"reg": false,
|
||||
"x": 1300,
|
||||
"y": 440,
|
||||
"y": 180,
|
||||
"wires": [
|
||||
[
|
||||
"cbb123ab.fd3428"
|
||||
|
@ -5592,7 +5594,7 @@
|
|||
"name": "",
|
||||
"events": "change",
|
||||
"x": 1500,
|
||||
"y": 420,
|
||||
"y": 160,
|
||||
"wires": [
|
||||
[]
|
||||
]
|
||||
|
@ -5613,7 +5615,7 @@
|
|||
"delay": "1000",
|
||||
"topic": "object_lat",
|
||||
"x": 620,
|
||||
"y": 700,
|
||||
"y": 440,
|
||||
"wires": [
|
||||
[
|
||||
"7953b1b2.d53ed8"
|
||||
|
@ -5636,7 +5638,7 @@
|
|||
"delay": "1000",
|
||||
"topic": "object_lon",
|
||||
"x": 610,
|
||||
"y": 740,
|
||||
"y": 480,
|
||||
"wires": [
|
||||
[
|
||||
"7953b1b2.d53ed8"
|
||||
|
@ -5656,7 +5658,7 @@
|
|||
"passthru": true,
|
||||
"topic": "object_date",
|
||||
"x": 1250,
|
||||
"y": 700,
|
||||
"y": 440,
|
||||
"wires": [
|
||||
[
|
||||
"29f2b365.4327ec"
|
||||
|
@ -5679,7 +5681,7 @@
|
|||
"delay": 300,
|
||||
"topic": "object_time",
|
||||
"x": 1250,
|
||||
"y": 740,
|
||||
"y": 480,
|
||||
"wires": [
|
||||
[
|
||||
"1a945afa.d60aad"
|
||||
|
@ -5701,7 +5703,7 @@
|
|||
"resendOnRefresh": true,
|
||||
"templateScope": "local",
|
||||
"x": 590,
|
||||
"y": 780,
|
||||
"y": 520,
|
||||
"wires": [
|
||||
[]
|
||||
]
|
||||
|
@ -5721,7 +5723,7 @@
|
|||
"resendOnRefresh": true,
|
||||
"templateScope": "local",
|
||||
"x": 590,
|
||||
"y": 900,
|
||||
"y": 640,
|
||||
"wires": [
|
||||
[]
|
||||
]
|
||||
|
@ -5903,10 +5905,10 @@
|
|||
"type": "ui_text_input",
|
||||
"z": "b771c342.49603",
|
||||
"name": "sample_concentrated_sample_volume",
|
||||
"label": "Concentrated sample volume",
|
||||
"tooltip": "Volume extracted from the net",
|
||||
"label": "Concentrated sample volume (mL)",
|
||||
"tooltip": "Volume extracted from the net (in mL)",
|
||||
"group": "3e1ba03d.f01d8",
|
||||
"order": 8,
|
||||
"order": 9,
|
||||
"width": 5,
|
||||
"height": 1,
|
||||
"passthru": true,
|
||||
|
@ -5914,7 +5916,7 @@
|
|||
"delay": "1000",
|
||||
"topic": "sample_concentrated_sample_volume",
|
||||
"x": 590,
|
||||
"y": 500,
|
||||
"y": 240,
|
||||
"wires": [
|
||||
[
|
||||
"9f501f49.45645"
|
||||
|
@ -5937,7 +5939,7 @@
|
|||
"delay": "1000",
|
||||
"topic": "sample_gear_net_opening",
|
||||
"x": 620,
|
||||
"y": 620,
|
||||
"y": 360,
|
||||
"wires": [
|
||||
[
|
||||
"9f501f49.45645"
|
||||
|
@ -6117,7 +6119,7 @@
|
|||
"tooltip": "",
|
||||
"place": "Coordinates type",
|
||||
"group": "3e1ba03d.f01d8",
|
||||
"order": 5,
|
||||
"order": 6,
|
||||
"width": 0,
|
||||
"height": 0,
|
||||
"passthru": true,
|
||||
|
@ -6137,7 +6139,7 @@
|
|||
"payload": "",
|
||||
"topic": "coordinates_type",
|
||||
"x": 590,
|
||||
"y": 1020,
|
||||
"y": 760,
|
||||
"wires": [
|
||||
[
|
||||
"8318ab20.aa34f8"
|
||||
|
@ -6155,7 +6157,7 @@
|
|||
"initialize": "",
|
||||
"finalize": "",
|
||||
"x": 870,
|
||||
"y": 840,
|
||||
"y": 580,
|
||||
"wires": [
|
||||
[
|
||||
"9f501f49.45645"
|
||||
|
@ -6187,7 +6189,7 @@
|
|||
"topic": "",
|
||||
"name": "",
|
||||
"x": 1070,
|
||||
"y": 860,
|
||||
"y": 600,
|
||||
"wires": [
|
||||
[]
|
||||
]
|
||||
|
@ -6203,7 +6205,7 @@
|
|||
"initialize": "",
|
||||
"finalize": "",
|
||||
"x": 780,
|
||||
"y": 1020,
|
||||
"y": 760,
|
||||
"wires": [
|
||||
[]
|
||||
]
|
||||
|
@ -6230,7 +6232,7 @@
|
|||
"payload": "dd",
|
||||
"payloadType": "str",
|
||||
"x": 390,
|
||||
"y": 1020,
|
||||
"y": 760,
|
||||
"wires": [
|
||||
[
|
||||
"db44a49e.960558"
|
||||
|
|
Loading…
Reference in a new issue