curious.bio/planktoscope
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Update image.py

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tpollina 2019-12-13 13:01:34 -08:00 committed by GitHub
parent 99f1d7bb9f
commit 6c7e68bcb5
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1 changed files with 8 additions and 9 deletions
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scripts/image.py
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@ -1,8 +1,8 @@
#!/usr/bin/env python
#Imaging a volume of 24ml with a flowrate of 3.2ml/min
#in folder named "/home/pi/Desktop/tara_pacific/20200226/142632/"
#python3.7 path/to/file/image.py tara_pacific 20200226 142632 24 3.2
#Imaging a volume with a flowrate
#in folder named "/home/pi/PlanktonScope/acquisitions/sample_project/sample_id/acq_id"
#python3.7 $HOME/PlanktonScope/scripts/image.py tara_pacific sample_project sample_id acq_id volume flowrate
import time
from time import sleep
@ -14,11 +14,11 @@ import sys
#[t] : ex:tara_pacific
sample_project = str(sys.argv[1])
#[f] : ISO8601 YYYYMMJJ UTC
sample_date = str(sys.argv[2])
#[t] : unique identifier
sample_id = str(sys.argv[2])
#[f] : ISO8601 HHMMSS UTC
sample_time = str(sys.argv[3])
#[t] : unique identifier
acq_id = str(sys.argv[3])
#[i] : ex:24ml
volume = int(sys.argv[4])
@ -34,7 +34,7 @@ max_fps = 0.7
nb_frame = int(duration/max_fps)
path= "/home/pi/Desktop/"+sample_project+"/"+sample_date+"/"+sample_time+"/"
path= "/home/pi/"+sample_project+"/"+sample_id+"/"+acq_id+"/"
if not os.path.exists(path):
os.makedirs(path)
@ -62,4 +62,3 @@ def image(nb_frame, path):
image(nb_frame, path)