segmenter: add metadata regarding operations

(cherry picked from commit 625f754cd531806742327be920accc9ccf0e5f03)
This commit is contained in:
Romain Bazile 2021-06-08 16:31:24 +02:00 committed by Romain Bazile
parent 8436ac2926
commit 787db1431c

View file

@ -778,7 +778,35 @@ class SegmenterProcess(multiprocessing.Process):
date = datetime.datetime.utcnow().isoformat() date = datetime.datetime.utcnow().isoformat()
sample = self.__global_metadata["sample_id"].replace(" ", "_") sample = self.__global_metadata["sample_id"].replace(" ", "_")
# TODO Add process informations to metadata here # TODO Make this dynamic: if we change operations order and/or parameters, we need to make this evolve.
self.__global_metadata["process_1st_operation"] = {
"type": "remove_background",
"parameters": {"type": "flat"},
}
self.__global_metadata["process_2nd_operation"] = {
"type": "simple_threshold",
"parameters": {"algorithm": "THRESH_TRIANGLE"},
}
self.__global_metadata["process_3rd_operation"] = {
"type": "remove_previous_mask",
"parameters": {},
}
self.__global_metadata["process_4th_operation"] = {
"type": "erode",
"parameters": {"kernel_size": 2, "kernel_shape": "rectangle"},
}
self.__global_metadata["process_5th_operation"] = {
"type": "dilate",
"parameters": {"kernel_size": 8, "kernel_shape": "ellipse"},
}
self.__global_metadata["process_6th_operation"] = {
"type": "close",
"parameters": {"kernel_size": 8, "kernel_shape": "ellipse"},
}
self.__global_metadata["process_7th_operation"] = {
"type": "erode",
"parameters": {"kernel_size": 8, "kernel_shape": "ellipse"},
}
# Define the name of the .zip file that will contain the images and the .tsv table for EcoTaxa # Define the name of the .zip file that will contain the images and the .tsv table for EcoTaxa
self.__archive_fn = os.path.join( self.__archive_fn = os.path.join(