From 81b8d2b91164d13d4fb04350024e6767308eb922 Mon Sep 17 00:00:00 2001 From: tpollina Date: Thu, 16 Jan 2020 16:16:46 +0100 Subject: [PATCH] Update and rename docs/MorphoCut_Installation_and_usage_error.txt to morphocut/morphocut_installation.txt --- .../morphocut_installation.txt | 78 ------------------- 1 file changed, 78 deletions(-) rename docs/MorphoCut_Installation_and_usage_error.txt => morphocut/morphocut_installation.txt (78%) diff --git a/docs/MorphoCut_Installation_and_usage_error.txt b/morphocut/morphocut_installation.txt similarity index 78% rename from docs/MorphoCut_Installation_and_usage_error.txt rename to morphocut/morphocut_installation.txt index dfef00b..4e09513 100644 --- a/docs/MorphoCut_Installation_and_usage_error.txt +++ b/morphocut/morphocut_installation.txt @@ -225,81 +225,3 @@ Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.7/dist Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.6.1->pandas->morphocut) (1.12.0) Installing collected packages: morphocut Successfully installed morphocut-0.1.1 - -######################################################### -######################################################### -USAGE ERROR -######################################################### -######################################################### - -Processing images under /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15... -0it [00:00, ?it/s] -0it [00:00, ?it/s]Found 94 files in /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15. - -Object 35_41_180124_84: : 85it [00:17, 5.95it/s] -Frame 35_41_180124: : 1it [00:17, 17.03s/it] -Object 35_41_763395_168: : 169it [00:24, 47.97it/s] -Frame 35_41_763395: : 2it [00:24, 14.11s/it] -Object 35_42_339153_245: : 245it [00:31, 44.73it/s] -Frame 35_42_339153: : 3it [00:31, 11.93s/it] -Object 35_42_899894_320: : 319it [00:38, 42.28it/s] -Frame 35_42_899894: : 4it [00:38, 10.44s/it] -Object 35_43_467613_394: : 394it [00:45, 44.59it/s] -Frame 35_43_467613: : 5it [00:44, 9.36s/it] -Object 35_44_040639_465: : 466it [00:56, 32.28it/s] -Frame 35_44_040639: : 6it [00:59, 9.95s/it] -Object 35_44_040639_465: : 466it [00:59, 7.78it/s] -Traceback (most recent call last): - File "/home/pi/Downloads/Morphocut.py", line 115, in - p.run() - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 748, in run - for _ in self.transform_stream(): - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream - for obj in progress: - File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__ - for obj in iterable: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/contrib/ecotaxa.py", line 111, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 184, in transform_stream - for i, obj in enumerate(stream, start=self.start): - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 142, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream - for obj in progress: - File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__ - for obj in iterable: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream - for obj in stream: - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 492, in transform_stream - result = self.transform(*parameters) # pylint: disable=no-member - File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 78, in transform - image, in_range=in_range, out_range=self.out_range - File "/home/pi/.local/lib/python3.7/site-packages/skimage/exposure/exposure.py", line 352, in rescale_intensity - image = (image - imin) / float(imax - imin) -MemoryError