diff --git a/flows/main.json b/flows/main.json index f29a74b..be89cf6 100644 --- a/flows/main.json +++ b/flows/main.json @@ -34,6 +34,13 @@ "disabled": false, "info": "" }, + { + "id": "1371dec5.76e671", + "type": "tab", + "label": "Settings", + "disabled": false, + "info": "" + }, { "id": "c1660bc.e7ff7f8", "type": "tab", @@ -42,9 +49,9 @@ "info": "" }, { - "id": "1371dec5.76e671", + "id": "9a22e67a.378818", "type": "tab", - "label": "Settings", + "label": "MQTT Receive", "disabled": false, "info": "" }, @@ -60,7 +67,7 @@ "y": 860, "wires": [ { - "id": "b584292a.24b08" + "id": "cdc75496.45f748" } ] } @@ -92,23 +99,46 @@ "color": "#DDAA99" }, { - "id": "da2c279f.cbe318", - "type": "ui_group", - "name": "Controller", - "tab": null, - "order": 6, - "disp": true, - "width": 6, - "collapse": false + "id": "20ae9e26.17d73a", + "type": "subflow", + "name": "Get global for config.json", + "info": "", + "category": "", + "in": [ + { + "x": 60, + "y": 80, + "wires": [ + { + "id": "b584292a.24b08" + } + ] + } + ], + "out": [ + { + "x": 340, + "y": 80, + "wires": [ + { + "id": "b584292a.24b08", + "port": 0 + } + ] + } + ], + "env": [], + "color": "#DDAA99" }, { "id": "833bc5bb.217ba8", "type": "ui_group", + "z": "", "name": "Preview", "tab": "181bb236.1e94be", "order": 1, "disp": true, - "width": 14, + "width": 18, "collapse": false }, { @@ -200,6 +230,7 @@ { "id": "cc8bc4eb.651868", "type": "ui_base", + "z": "", "theme": { "name": "theme-dark", "lightTheme": { @@ -316,6 +347,7 @@ { "id": "737ec584.2eea2c", "type": "ui_tab", + "z": "", "name": "Sample", "icon": "fa-eyedropper", "order": 2, @@ -339,7 +371,7 @@ "tab": "737ec584.2eea2c", "order": 1, "disp": true, - "width": 24, + "width": 11, "collapse": false }, { @@ -399,7 +431,7 @@ "tab": "737ec584.2eea2c", "order": 2, "disp": true, - "width": "24", + "width": 10, "collapse": false }, { @@ -409,7 +441,7 @@ "tab": "737ec584.2eea2c", "order": 4, "disp": false, - "width": 24, + "width": 10, "collapse": false }, { @@ -417,7 +449,7 @@ "type": "ui_group", "name": "Focus Adjustment", "tab": "181bb236.1e94be", - "order": 3, + "order": 4, "disp": true, "width": 10, "collapse": false @@ -427,9 +459,9 @@ "type": "ui_group", "name": "Fluidic Manual Manipulation", "tab": "181bb236.1e94be", - "order": 4, + "order": 5, "disp": true, - "width": 14, + "width": 10, "collapse": false }, { @@ -437,21 +469,11 @@ "type": "ui_group", "name": "Validation", "tab": "181bb236.1e94be", - "order": 5, + "order": 6, "disp": false, "width": "10", "collapse": false }, - { - "id": "567a49a4.244cb8", - "type": "ui_group", - "name": "Generic Information", - "tab": "c9194f02.9d5e9", - "order": 3, - "disp": true, - "width": 10, - "collapse": false - }, { "id": "404c301a.19c4e", "type": "ui_group", @@ -583,7 +605,7 @@ "tab": "737ec584.2eea2c", "order": 3, "disp": true, - "width": "24", + "width": 10, "collapse": false }, { @@ -682,34 +704,108 @@ "collapse": false }, { - "id": "e764dcc5.9e55c8", + "id": "8c38a81e.9897a8", + "type": "ui_group", + "z": "", + "name": "Camera Settings", + "tab": "181bb236.1e94be", + "order": 3, + "disp": true, + "width": "10", + "collapse": false + }, + { + "id": "ed19fd14.ba2bc8", "type": "ui_spacer", "name": "spacer", - "group": "4248342d.e55fac", + "group": "3e1ba03d.f01d8", "order": 7, - "width": 10, + "width": 1, "height": 1 }, { - "id": "60e1ee82.b706e8", + "id": "971ec4f0.ca9718", "type": "ui_spacer", "name": "spacer", - "group": "4322c187.e73e5", + "group": "cf5d9f0e.d57e7", + "order": 6, + "width": 4, + "height": 1 + }, + { + "id": "ee894df1.f9372", + "type": "ui_spacer", + "name": "spacer", + "group": "707d9797.c8e798", + "order": 5, + "width": 1, + "height": 1 + }, + { + "id": "f4e2e0a1.33948", + "type": "ui_spacer", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 2, + "width": 8, + "height": 1 + }, + { + "id": "1e82bb3b.7f0b1d", + "type": "ui_spacer", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 3, + "width": 12, + "height": 1 + }, + { + "id": "da2ef6ba.6c77", + "type": "ui_spacer", + "name": "spacer", + "group": "46be9c86.dea684", "order": 4, - "width": 10, + "width": 4, "height": 1 }, { - "id": "cf7da2b1.3c81b", + "id": "3116094c.81972e", + "type": "ui_spacer", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 6, + "width": 4, + "height": 1 + }, + { + "id": "9ca7cb9c.a296f8", + "type": "ui_spacer", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 8, + "width": 12, + "height": 1 + }, + { + "id": "dff95db9.441a9", "type": "ui_spacer", "name": "spacer", "group": "4322c187.e73e5", - "order": 7, + "order": 6, "width": 10, "height": 1 }, { - "id": "2e29ff58.977b88", + "id": "af26bc88.ba0548", + "type": "ui_spacer", + "name": "spacer", + "group": "4322c187.e73e5", + "order": 9, + "width": 10, + "height": 1 + }, + { + "id": "3432fc1c.79719c", "type": "ui_spacer", "name": "spacer", "group": "b5d61bc7.54fe48", @@ -718,7 +814,7 @@ "height": 1 }, { - "id": "86d29a27.55d4e", + "id": "58e49f6e.36a43", "type": "ui_spacer", "name": "spacer", "group": "b5d61bc7.54fe48", @@ -727,7 +823,7 @@ "height": 1 }, { - "id": "9b6d3ed4.6dfcc", + "id": "34d24744.cd3f3", "type": "ui_spacer", "name": "spacer", "group": "b5d61bc7.54fe48", @@ -736,7 +832,7 @@ "height": 1 }, { - "id": "7d4d95a.48907ec", + "id": "93f4db6d.d6c5a8", "type": "ui_spacer", "name": "spacer", "group": "b7919ae2.c01788", @@ -787,14 +883,14 @@ "color": "", "bgcolor": "", "icon": "home", - "payload": "", - "payloadType": "str", - "topic": "Home", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", "x": 410, "y": 460, "wires": [ [ - "7be6422d.73949c" + "f0fb77cf.8f1c28" ] ] }, @@ -810,22 +906,6 @@ [] ] }, - { - "id": "7be6422d.73949c", - "type": "function", - "z": "cb95299c.2817c8", - "name": "change tab", - "func": "\nmsg.payload={\"tab\":msg.topic};\nreturn msg;", - "outputs": 1, - "noerr": 0, - "x": 560, - "y": 460, - "wires": [ - [ - "f0fb77cf.8f1c28" - ] - ] - }, { "id": "a66e925b.4155c", "type": "ui_button", @@ -841,14 +921,14 @@ "color": "", "bgcolor": "", "icon": "home", - "payload": "", - "payloadType": "str", - "topic": "Home", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", "x": 130, - "y": 1120, + "y": 1140, "wires": [ [ - "75975366.93d6cc" + "60fd157b.8a5aac" ] ] }, @@ -858,30 +938,12 @@ "z": "1371dec5.76e671", "name": "", "events": "change", - "x": 440, - "y": 1120, + "x": 280, + "y": 1140, "wires": [ [] ] }, - { - "id": "75975366.93d6cc", - "type": "function", - "z": "1371dec5.76e671", - "name": "change tab", - "func": "\nmsg.payload={\"tab\":msg.topic};\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 280, - "y": 1120, - "wires": [ - [ - "60fd157b.8a5aac" - ] - ] - }, { "id": "2c8c45ab.610c0a", "type": "ui_gauge", @@ -1336,8 +1398,8 @@ "payload": "reboot", "payloadType": "str", "topic": "reboot", - "x": 800, - "y": 260, + "x": 120, + "y": 1000, "wires": [ [ "ee57d11c.ed1dd" @@ -1355,8 +1417,8 @@ "timer": "2", "oldrc": false, "name": "cmd", - "x": 1190, - "y": 260, + "x": 510, + "y": 1000, "wires": [ [], [], @@ -1381,8 +1443,8 @@ "payload": "shutdown", "payloadType": "str", "topic": "shutdown", - "x": 800, - "y": 340, + "x": 120, + "y": 1080, "wires": [ [ "ee57d11c.ed1dd" @@ -1396,8 +1458,8 @@ "name": "action", "func": "#!/usr/bin/python\nimport smbus\nimport time\nbus = smbus.SMBus(1)\ntime.sleep(1)\n#turn off fan RGB\nbus.write_byte_data(0x0d, 0x07, 0x00)\nbus.write_byte_data(0x0d, 0x07, 0x00)\n\n#msg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg", "outputs": 1, - "x": 1010, - "y": 300, + "x": 330, + "y": 1040, "wires": [ [ "b7ab1ada.1f4158", @@ -1416,8 +1478,8 @@ "timer": "1", "oldrc": false, "name": "i2c update", - "x": 1200, - "y": 340, + "x": 520, + "y": 1080, "wires": [ [], [], @@ -1518,8 +1580,8 @@ "group": "833bc5bb.217ba8", "name": "Stream Pi Camera", "order": 1, - "width": 14, - "height": 9, + "width": 18, + "height": "14", "format": "
\n \n
", "storeOutMessages": true, "fwdInMessages": true, @@ -1618,7 +1680,8 @@ "y": 240, "wires": [ [ - "fb887036.12429" + "fb887036.12429", + "67091ac0.8f9f6c" ] ] }, @@ -1890,7 +1953,7 @@ "mode": "text", "delay": 300, "topic": "sample_ship", - "x": 650, + "x": 670, "y": 340, "wires": [ [ @@ -1911,6 +1974,7 @@ "width": 0, "height": 0, "passthru": true, + "multiple": false, "options": [ { "label": "Plankton net", @@ -1935,7 +1999,7 @@ ], "payload": "", "topic": "sample_sampling_gear", - "x": 620, + "x": 630, "y": 460, "wires": [ [ @@ -1958,11 +2022,12 @@ "mode": "text", "delay": 300, "topic": "sample_operator", - "x": 640, + "x": 650, "y": 420, "wires": [ [ - "9f501f49.45645" + "9f501f49.45645", + "52af9ac0.60eb24" ] ] }, @@ -1981,7 +2046,7 @@ "mode": "text", "delay": 300, "topic": "sample_project", - "x": 640, + "x": 660, "y": 300, "wires": [ [ @@ -2004,7 +2069,7 @@ "mode": "text", "delay": 300, "topic": "sample_id", - "x": 660, + "x": 670, "y": 380, "wires": [ [ @@ -2017,13 +2082,13 @@ "type": "function", "z": "b771c342.49603", "name": "set global", - "func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);", + "func": "global.set(msg.topic,msg.payload);", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", - "x": 1100, - "y": 520, + "x": 1240, + "y": 540, "wires": [ [] ] @@ -2041,6 +2106,7 @@ "width": 0, "height": 0, "passthru": true, + "multiple": false, "options": [ { "label": "200 μm µ-Slide I Luer", @@ -2069,7 +2135,8 @@ "y": 80, "wires": [ [ - "fb887036.12429" + "fb887036.12429", + "99b11fe4.2795d" ] ] }, @@ -2078,12 +2145,12 @@ "type": "function", "z": "baa1e3d9.cb29d", "name": "set global", - "func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);", + "func": "global.set(msg.topic, msg.payload);", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", - "x": 840, + "x": 1100, "y": 180, "wires": [ [] @@ -2126,9 +2193,11 @@ "type": "function", "z": "b771c342.49603", "name": "Check form", - "func": "var sample_project= global.get(\"sample_project\");\nvar sample_ship= global.get(\"sample_ship\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar sample_day= global.get(\"sample_day\");\nvar sample_hour= global.get(\"sample_hour\");\n\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n}\n\nelse if (sample_ship === undefined || sample_ship === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ship\"\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample latitude\"\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample longitude\"\n}\n\nelse if (sample_day === undefined || sample_day === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date\"\n}\n\nelse if (sample_hour === undefined || sample_hour === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time\"\n}\n\nelse {\n msg.topic = \"Change Tab\"\n msg.payload={\"tab\":\"Optic Configuration\"};\n}\nreturn msg;\n", + "func": "var sample_project= global.get(\"sample_project\");\nvar sample_ship= global.get(\"sample_ship\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nvar object_lat_end= global.get(\"object_lat_end\");\nvar object_lon_end= global.get(\"object_lon_end\");\nvar object_date_end= global.get(\"object_date_end\");\nvar object_time_end= global.get(\"object_time_end\");\n\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n}\n\nelse if (sample_ship === undefined || sample_ship === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ship\"\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of throw\"\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of throw\"\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of throw\"\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of throw\"\n}\n\nelse if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n}\n\nelse if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n}\n\nelse if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n}\n\nelse if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n}\n\nelse {\n msg.topic = \"Change Tab\"\n msg.payload={\"tab\":\"Optic Configuration\"};\n}\nreturn msg;\n", "outputs": 1, "noerr": 0, + "initialize": "", + "finalize": "", "x": 430, "y": 1060, "wires": [ @@ -2211,14 +2280,14 @@ "tooltip": "36°57'9\" N", "group": "cef1e703.bcf3c8", "order": 1, - "width": 12, + "width": 5, "height": 1, "passthru": true, - "mode": "number", + "mode": "text", "delay": 300, "topic": "object_lat", - "x": 660, - "y": 520, + "x": 680, + "y": 580, "wires": [ [ "42795da1.0ee104" @@ -2234,14 +2303,14 @@ "tooltip": "110°4'21\" W", "group": "cef1e703.bcf3c8", "order": 2, - "width": 12, + "width": 5, "height": 1, "passthru": true, - "mode": "number", + "mode": "text", "delay": 300, "topic": "object_lon", - "x": 650, - "y": 560, + "x": 670, + "y": 620, "wires": [ [ "42795da1.0ee104" @@ -2256,12 +2325,12 @@ "label": "Date", "group": "cef1e703.bcf3c8", "order": 3, - "width": 12, + "width": 5, "height": 1, "passthru": true, "topic": "object_date", - "x": 650, - "y": 600, + "x": 670, + "y": 660, "wires": [ [ "29f2b365.4327ec" @@ -2274,17 +2343,17 @@ "z": "b771c342.49603", "name": "object_time", "label": "Time :", - "tooltip": "", + "tooltip": "UTC time, 03:23:00 or 15:45", "group": "cef1e703.bcf3c8", "order": 4, - "width": 12, + "width": 5, "height": 1, "passthru": true, - "mode": "time", + "mode": "text", "delay": 300, "topic": "object_time", - "x": 650, - "y": 640, + "x": 670, + "y": 700, "wires": [ [ "1a945afa.d60aad" @@ -2297,7 +2366,7 @@ "z": "bccd1f23.87219", "name": "", "events": "change", - "x": 840, + "x": 1060, "y": 1000, "wires": [ [] @@ -2331,6 +2400,8 @@ "func": "var acq_fnumber_objective= global.get(\"acq_fnumber_objective\");\n\nif (acq_fnumber_objective === undefined || acq_fnumber_objective === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Focal Length of the objective\"\n}\n\nelse {\n msg.topic = \"Change Tab\"\n msg.payload={\"tab\":\"Fluidic Acquisition\"};\n}\nreturn msg;\n", "outputs": 1, "noerr": 0, + "initialize": "", + "finalize": "", "x": 670, "y": 1060, "wires": [ @@ -2391,7 +2462,7 @@ "name": "Backward", "group": "707d9797.c8e798", "order": 2, - "width": 4, + "width": 2, "height": 1, "passthru": false, "label": "", @@ -2417,7 +2488,7 @@ "name": "Forward", "group": "707d9797.c8e798", "order": 4, - "width": 5, + "width": 2, "height": 1, "passthru": true, "label": "", @@ -2530,6 +2601,7 @@ "format": "
\n Magnification : X\n \n \n
", "storeOutMessages": true, "fwdInMessages": true, + "resendOnRefresh": false, "templateScope": "local", "x": 1670, "y": 100, @@ -2542,7 +2614,7 @@ "type": "function", "z": "bccd1f23.87219", "name": "calculate", - "func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n global.set(\"magnification\",0.6);\n global.set(\"process_pixel\",1.86);\n global.set(\"sug_min\",60);\n global.set(\"sug_max\",670);\n global.set(\"sug_flowrate\",3);\n break;\n case \"16\":\n global.set(\"magnification\",0.94);\n global.set(\"process_pixel\",1.19);\n global.set(\"sug_min\",40);\n global.set(\"sug_max\",430);\n global.set(\"sug_flowrate\",2.4);\n break;\n case \"12\":\n global.set(\"magnification\",1.20);\n global.set(\"process_pixel\",0.94);\n global.set(\"sug_min\",30);\n global.set(\"sug_max\",340);\n global.set(\"sug_flowrate\",1.25);\n break;\n case \"8\":\n global.set(\"magnification\",1.78);\n global.set(\"process_pixel\",0.63);\n global.set(\"sug_min\",20);\n global.set(\"sug_max\",230);\n global.set(\"sug_flowrate\",0.42);\n break;\n case \"6\":\n global.set(\"magnification\",2.36);\n global.set(\"process_pixel\",0.48);\n global.set(\"sug_min\",15);\n global.set(\"sug_max\",170);\n global.set(\"sug_flowrate\",0.32);\n break;\n}\nreturn msg;", + "func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n global.set(\"acq_magnification\",0.6);\n global.set(\"process_pixel\",1.86);\n global.set(\"sug_min\",60);\n global.set(\"sug_max\",670);\n global.set(\"sug_flowrate\",3);\n break;\n case \"16\":\n global.set(\"acq_magnification\",0.94);\n global.set(\"process_pixel\",1.19);\n global.set(\"sug_min\",40);\n global.set(\"sug_max\",430);\n global.set(\"sug_flowrate\",2.4);\n break;\n case \"12\":\n global.set(\"acq_magnification\",1.20);\n global.set(\"process_pixel\",0.94);\n global.set(\"sug_min\",30);\n global.set(\"sug_max\",340);\n global.set(\"sug_flowrate\",1.25);\n break;\n case \"8\":\n global.set(\"acq_magnification\",1.78);\n global.set(\"process_pixel\",0.63);\n global.set(\"sug_min\",20);\n global.set(\"sug_max\",230);\n global.set(\"sug_flowrate\",0.42);\n break;\n case \"6\":\n global.set(\"acq_magnification\",2.36);\n global.set(\"process_pixel\",0.48);\n global.set(\"sug_min\",15);\n global.set(\"sug_max\",170);\n global.set(\"sug_flowrate\",0.32);\n break;\n}\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", @@ -2621,9 +2693,11 @@ "type": "function", "z": "bccd1f23.87219", "name": "get magnification", - "func": "var magnification = global.get(\"magnification\");\nmsg.payload = magnification;\nreturn msg;", + "func": "var magnification = global.get(\"acq_magnification\");\nmsg.payload = magnification;\nreturn msg;", "outputs": 1, "noerr": 0, + "initialize": "", + "finalize": "", "x": 1490, "y": 100, "wires": [ @@ -2721,7 +2795,7 @@ "name": "", "group": "5517c651.b2f668", "order": 1, - "width": 12, + "width": 5, "height": 1, "passthru": false, "label": "Previous", @@ -2747,7 +2821,7 @@ "name": "", "group": "5517c651.b2f668", "order": 2, - "width": 12, + "width": 5, "height": 1, "passthru": false, "label": "Continue", @@ -2867,171 +2941,6 @@ ] ] }, - { - "id": "b4d324de.a2bd28", - "type": "ui_worldmap", - "z": "b771c342.49603", - "d": true, - "group": "da2c279f.cbe318", - "order": 6, - "width": 0, - "height": 0, - "name": "", - "lat": "1.5", - "lon": "1.5", - "zoom": "4", - "layer": "OSM grey", - "cluster": "1", - "maxage": "", - "usermenu": "hide", - "layers": "hide", - "panit": "false", - "panlock": "false", - "zoomlock": "false", - "hiderightclick": "true", - "coords": "deg", - "showgrid": "false", - "path": "/worldmap", - "x": 840, - "y": 920, - "wires": [] - }, - { - "id": "cf3e1477.25af68", - "type": "function", - "z": "b771c342.49603", - "d": true, - "name": "set point", - "func": "var sample_id= global.get(\"sample_id\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\n\nif (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n}\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample latitude\"\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample longitude\"\n}\n\nelse {\n msg.topic = \"Place\"\n msg.payload={\"name\":sample_id, \"lat\":object_lat, \"lon\":object_lon}\n}\nreturn msg;\n", - "outputs": 1, - "noerr": 0, - "x": 420, - "y": 960, - "wires": [ - [ - "105e9b1b.725865" - ] - ] - }, - { - "id": "d7a44df2.0fb29", - "type": "ui_button", - "z": "b771c342.49603", - "d": true, - "name": "", - "group": "da2c279f.cbe318", - "order": 5, - "width": 5, - "height": 1, - "passthru": false, - "label": "Place", - "tooltip": "", - "color": "#333333", - "bgcolor": "white", - "icon": "", - "payload": "", - "payloadType": "str", - "topic": "", - "x": 270, - "y": 960, - "wires": [ - [ - "cf3e1477.25af68" - ] - ] - }, - { - "id": "105e9b1b.725865", - "type": "switch", - "z": "b771c342.49603", - "d": true, - "name": "", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "Place", - "vt": "str" - }, - { - "t": "eq", - "v": "Missing entry :", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 610, - "y": 960, - "wires": [ - [ - "b4d324de.a2bd28" - ], - [ - "10c9c12a.feae6f" - ] - ] - }, - { - "id": "10c9c12a.feae6f", - "type": "ui_toast", - "z": "b771c342.49603", - "d": true, - "position": "dialog", - "displayTime": "3", - "highlight": "", - "sendall": true, - "outputs": 1, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 850, - "y": 980, - "wires": [ - [] - ] - }, - { - "id": "f07dec1d.147ce", - "type": "ui_text_input", - "z": "baa1e3d9.cb29d", - "name": "comment", - "label": "Comment", - "tooltip": "", - "group": "567a49a4.244cb8", - "order": 1, - "width": 0, - "height": 0, - "passthru": true, - "mode": "text", - "delay": 300, - "topic": "comment", - "x": 640, - "y": 280, - "wires": [ - [ - "fb887036.12429" - ] - ] - }, - { - "id": "7c974057.4d3f", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get duration acquisition", - "func": "msg.delay = global.get(\"duration\");\n\nreturn msg;", - "outputs": 1, - "noerr": 0, - "x": 360, - "y": 720, - "wires": [ - [] - ] - }, { "id": "29be525e.0c87fe", "type": "ui_template", @@ -3041,13 +2950,13 @@ "order": 6, "width": 0, "height": 0, - "format": "
\n \n \n \n \n
", + "format": "
\n Sample Project:
\n Sample Ship:
\n sample operator:
\n sample id:
\n sample sampling_gear:
\n\n acq id:
\n acq instrument:
\n acq instrument_id:
\n acq camera:
\n acq celltype:
\n acq minimum_mesh:
\n acq maximum_mesh:
\n acq min_esd:
\n acq max_esd:
\n acq volume:
\n acq magnification:
\n acq fnumber_objective:
\n acq software:
\n acq flowrate:
\n\n object lat:
\n object lon:
\n object lat end:
\n object lon end:
\n object date:
\n object time:
\n object date end:
\n object time end:
\n object depth min:
\n object depth max:
\n\n process pixel:
\n process id: \n
\n", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": false, "templateScope": "local", "x": 950, - "y": 460, + "y": 500, "wires": [ [] ] @@ -3057,37 +2966,19 @@ "type": "function", "z": "baa1e3d9.cb29d", "name": "get global", - "func": "msg.payload = {\n \"comment\":global.get(\"comment\"),\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_instrument_id\":global.get(\"machine_name\"),\n \"acq_camera\":global.get(\"camera_name\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_min_esd\":global.get(\"acq_min_esd\"),\n \"acq_max_esd\":global.get(\"acq_max_esd\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_magnification\":global.get(\"magnification\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_flowrate\":global.get(\"sug_flowrate\"),\n \n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\"),\n \"object_lat_end\":global.get(\"object_lat_end\"),\n \"object_lon_end\":global.get(\"object_lon_end\"),\n \"object_date\":global.get(\"object_date\"),\n \"object_time\":global.get(\"object_time\"),\n \"object_date_end\":global.get(\"object_date_end\"),\n \"object_time_end\":global.get(\"object_time_end\"),\n \"object_depth_min\":global.get(\"object_depth_min\"),\n \"object_depth_max\":global.get(\"object_depth_max\"),\n \n \"process_pixel\":global.get(\"process_pixel\"),\n \"process_id\":global.get(\"process_id\")\n \n }\n\nreturn msg;", + "func": "msg.payload = {\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_instrument_id\":global.get(\"acq_instrument_id\"),\n \"acq_camera\":global.get(\"acq_camera\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_min_esd\":global.get(\"acq_min_esd\"),\n \"acq_max_esd\":global.get(\"acq_max_esd\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_magnification\":global.get(\"acq_magnification\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_flowrate\":global.get(\"sug_flowrate\"),\n \n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\"),\n \"object_lat_end\":global.get(\"object_lat_end\"),\n \"object_lon_end\":global.get(\"object_lon_end\"),\n \"object_date\":global.get(\"object_date\"),\n \"object_time\":global.get(\"object_time\"),\n \"object_date_end\":global.get(\"object_date_end\"),\n \"object_time_end\":global.get(\"object_time_end\"),\n \"object_depth_min\":global.get(\"object_depth_min\"),\n \"object_depth_max\":global.get(\"object_depth_max\"),\n \n \"process_pixel\":global.get(\"process_pixel\"),\n \"process_id\":global.get(\"process_id\")\n \n}\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", - "x": 720, + "x": 740, "y": 500, "wires": [ [ - "29be525e.0c87fe", - "295bd912.8d2556" + "29be525e.0c87fe" ] ] }, - { - "id": "295bd912.8d2556", - "type": "debug", - "z": "baa1e3d9.cb29d", - "name": "", - "active": true, - "tosidebar": true, - "console": false, - "tostatus": false, - "complete": "payload", - "targetType": "msg", - "statusVal": "", - "statusType": "auto", - "x": 950, - "y": 500, - "wires": [] - }, { "id": "7ca7754c.0f731c", "type": "inject", @@ -3577,8 +3468,8 @@ "name": "Iso slider", "label": "ISO", "tooltip": "Possible values are 100, 200, 320, 400, 500, 640, 800. 500 by default.", - "group": "4248342d.e55fac", - "order": 10, + "group": "8c38a81e.9897a8", + "order": 2, "width": 0, "height": 0, "passthru": true, @@ -3639,8 +3530,8 @@ "name": "Shutter speed slider", "label": "Shutter Speed", "tooltip": "In microseconds, up to 2500µs, 10µs by default", - "group": "4248342d.e55fac", - "order": 9, + "group": "8c38a81e.9897a8", + "order": 1, "width": 0, "height": 0, "passthru": true, @@ -3738,26 +3629,6 @@ ] ] }, - { - "id": "96ff24f0.955f", - "type": "ui_template", - "z": "bccd1f23.87219", - "group": "4248342d.e55fac", - "name": "Camera Settings", - "order": 8, - "width": 0, - "height": 0, - "format": "
\nCamera Settings\n
", - "storeOutMessages": true, - "fwdInMessages": true, - "resendOnRefresh": false, - "templateScope": "local", - "x": 360, - "y": 780, - "wires": [ - [] - ] - }, { "id": "f782a471.447748", "type": "inject", @@ -3955,7 +3826,7 @@ "oldrc": false, "name": "Hard kill", "x": 980, - "y": 1020, + "y": 880, "wires": [ [], [], @@ -4038,8 +3909,8 @@ "scope": [ "9998aa86.74bb" ], - "x": 980, - "y": 1080, + "x": 1220, + "y": 900, "wires": [ [ "439b952c.3e9cf4" @@ -4059,8 +3930,8 @@ "targetType": "msg", "statusVal": "", "statusType": "auto", - "x": 1210, - "y": 1080, + "x": 1450, + "y": 900, "wires": [] }, { @@ -4099,7 +3970,7 @@ "randomUnits": "seconds", "drop": false, "x": 740, - "y": 1020, + "y": 880, "wires": [ [ "672d89a8.4e6968" @@ -4161,7 +4032,7 @@ "order": 1, "width": 0, "height": 0, - "format": "
If you want to update to the latest code version of Node-Red and Python, please click here.\n
\nPlease note that all your changes are going to be saved with git stash but are not going to be restored!
", + "format": "
If you want to update to the latest code version of Node-Red and Python, please click here.\nWe are trying to save your changes with git stash and restore them afterwards, but clearly, things may break!
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, @@ -4178,7 +4049,7 @@ "z": "baa1e3d9.cb29d", "name": "", "group": "4322c187.e73e5", - "order": 9, + "order": 11, "width": 5, "height": 1, "passthru": false, @@ -4203,7 +4074,7 @@ "type": "function", "z": "baa1e3d9.cb29d", "name": "Image control", - "func": "state = global.get(\"state\");\nglobal.set('img_counter',0);\nglobal.set('obj_counter',0);\nif (state === null){state=\"free\"}\n\nvar nb_frame= global.get(\"nb_frame\");\nvar acq_celltype= global.get(\"acq_celltype\");\nvar acq_minimum_mesh= global.get(\"acq_minimum_mesh\");\nvar acq_maximum_mesh= global.get(\"acq_maximum_mesh\");\nvar acq_volume= global.get(\"acq_volume\");\nvar acq_id= global.get(\"acq_id\");\nvar pump_direction= global.get(\"pump_direction\");\n\nif (acq_celltype === undefined || acq_celltype === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Type of the flowcell\"\n}else if (acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Lower fraction size\"\n}else if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Upper fraction size\"\n}else if (acq_volume === undefined || acq_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to image\"\n}else if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Acquisition ID\"\n}else if (nb_frame === undefined || nb_frame === \"\" || nb_frame === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Number of image to save\";\n \n}else if (pump_direction === undefined || pump_direction === \"\" || pump_direction === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Pump direction\";\n \n}else {\n msg.payload={\"action\":\"image\", \n \"sleep\":1,\n \"pump_direction\": pump_direction,\n \"volume\":acq_volume/nb_frame,\n \"nb_frame\":nb_frame,\n }\n}\n\nreturn msg;", + "func": "state = global.get(\"state\");\nglobal.set('img_counter',0);\nglobal.set('obj_counter',0);\nif (state === null){state=\"free\"}\n\nvar nb_frame= global.get(\"nb_frame\");\nvar acq_celltype= global.get(\"acq_celltype\");\nvar acq_minimum_mesh= global.get(\"acq_minimum_mesh\");\nvar acq_maximum_mesh= global.get(\"acq_maximum_mesh\");\nvar acq_id= global.get(\"acq_id\");\nvar pump_direction= global.get(\"pump_direction\");\nvar imaging_pump_volume= global.get(\"imaging_pump_volume\");\n\nif (acq_celltype === undefined || acq_celltype === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Type of the flowcell\"\n}else if (acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Lower fraction size\"\n}else if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Upper fraction size\"\n}else if (imaging_pump_volume === undefined || imaging_pump_volume === \"\" || imaging_pump_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume inbetween images\"\n}else if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Acquisition ID\"\n}else if (nb_frame === undefined || nb_frame === \"\" || nb_frame === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Number of image to save\";\n \n}else if (pump_direction === undefined || pump_direction === \"\" || pump_direction === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Pump direction\";\n \n}else {\n msg.payload={\"action\":\"image\", \n \"sleep\":1,\n \"pump_direction\": pump_direction,\n \"volume\":imaging_pump_volume,\n \"nb_frame\":nb_frame,\n }\n}\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", @@ -4213,7 +4084,8 @@ "wires": [ [ "52ea7d01.711034", - "40c12463.a1f84c" + "40c12463.a1f84c", + "f62d9622.621318" ] ], "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" @@ -4290,7 +4162,7 @@ "z": "baa1e3d9.cb29d", "name": "Stop Acquisition", "group": "4322c187.e73e5", - "order": 8, + "order": 10, "width": 5, "height": 1, "passthru": true, @@ -4331,7 +4203,7 @@ "label": "Pump direction", "tooltip": "BACKWARD / FORWARD", "group": "4322c187.e73e5", - "order": 5, + "order": 7, "width": 5, "height": 1, "passthru": true, @@ -4350,8 +4222,7 @@ "y": 660, "wires": [ [ - "295bd912.8d2556", - "1ba1619e.4aea16" + "6b2239f3.41fa3" ] ] }, @@ -4402,7 +4273,7 @@ "z": "baa1e3d9.cb29d", "name": "", "group": "4322c187.e73e5", - "order": 6, + "order": 8, "width": 5, "height": 1, "passthru": false, @@ -4419,7 +4290,8 @@ "wires": [ [ "52ea7d01.711034", - "e2919164.70927" + "e2919164.70927", + "a4abb1ae.2ae418" ] ] }, @@ -4445,7 +4317,7 @@ "type": "function", "z": "1371dec5.76e671", "name": "set global", - "func": "global.set(msg.topic,msg.payload);\nreturn msg;", + "func": "global.set(msg.topic,msg.payload);\n", "outputs": 1, "noerr": 0, "initialize": "", @@ -4610,19 +4482,17 @@ { "id": "b584292a.24b08", "type": "function", - "z": "1c24ad9c.bebec2", + "z": "20ae9e26.17d73a", "name": "get global", - "func": "msg.payload={\n \n \"sample_project\":global.get(\"sample_project\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_instrument_id\":global.get(\"machine_name\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_min_esd\":global.get(\"acq_min_esd\"),\n \"acq_max_esd\":global.get(\"acq_max_esd\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_magnification\":global.get(\"magnification\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_camera\":global.get(\"camera_name\"),\n\n \"custom_nb_frame\":global.get(\"custom_nb_frame\"),\n \"custom_nb_step\":global.get(\"custom_nb_step\"),\n \"custom_segmentation\":global.get(\"custom_segmentation\"),\n \"custom_sleep_before\":global.get(\"custom_sleep_before\"),\n \"focus_nb_step\":global.get(\"focus_nb_step\"),\n \"pump_flowrate\":global.get(\"pump_flowrate\"),\n \"pump_manual_volume\":global.get(\"pump_manual_volume\"),\n};\nreturn msg;", + "func": "msg.payload={\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_instrument_id\":global.get(\"machine_name\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_min_esd\":global.get(\"acq_min_esd\"),\n \"acq_max_esd\":global.get(\"acq_max_esd\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_magnification\":global.get(\"magnification\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_camera\":global.get(\"camera\"),\n \n \"object_depth_min\":global.get(\"object_depth_min\"),\n \"object_depth_max\":global.get(\"object_depth_max\"),\n \"process_pixel\":global.get(\"process_pixel\"),\n \"process_id\":global.get(\"process_id\")\n};\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", - "x": 560, - "y": 860, + "x": 200, + "y": 80, "wires": [ - [ - "2e6ddf51.c0dba" - ] + [] ] }, { @@ -4635,7 +4505,7 @@ "createDir": true, "overwriteFile": "true", "encoding": "none", - "x": 970, + "x": 1040, "y": 860, "wires": [ [] @@ -4649,7 +4519,7 @@ "property": "payload", "action": "str", "pretty": true, - "x": 720, + "x": 810, "y": 860, "wires": [ [ @@ -4735,6 +4605,7 @@ "type": "subflow:1c24ad9c.bebec2", "z": "b771c342.49603", "name": "", + "env": [], "x": 830, "y": 1080, "wires": [ @@ -4750,14 +4621,14 @@ "tooltip": "36°57'9\" N", "group": "cf5d9f0e.d57e7", "order": 1, - "width": 12, + "width": 5, "height": 1, "passthru": true, - "mode": "number", + "mode": "text", "delay": 300, "topic": "object_lat_end", - "x": 640, - "y": 700, + "x": 660, + "y": 760, "wires": [ [ "42795da1.0ee104" @@ -4773,14 +4644,14 @@ "tooltip": "110°4'21\" W", "group": "cf5d9f0e.d57e7", "order": 2, - "width": 12, + "width": 5, "height": 1, "passthru": true, - "mode": "number", + "mode": "text", "delay": 300, "topic": "object_lon_end", - "x": 640, - "y": 740, + "x": 660, + "y": 800, "wires": [ [ "42795da1.0ee104" @@ -4795,12 +4666,12 @@ "label": "Date", "group": "cf5d9f0e.d57e7", "order": 3, - "width": 12, + "width": 5, "height": 1, "passthru": true, "topic": "object_date_end", - "x": 640, - "y": 780, + "x": 660, + "y": 840, "wires": [ [ "29f2b365.4327ec" @@ -4813,17 +4684,17 @@ "z": "b771c342.49603", "name": "object_time_end", "label": "Time :", - "tooltip": "", + "tooltip": "UTC time, 03:23:00 or 15:45", "group": "cf5d9f0e.d57e7", "order": 4, - "width": 12, + "width": 5, "height": 1, "passthru": true, - "mode": "time", + "mode": "text", "delay": 300, "topic": "object_time_end", - "x": 640, - "y": 820, + "x": 660, + "y": 880, "wires": [ [ "1a945afa.d60aad" @@ -4835,7 +4706,7 @@ "type": "function", "z": "b771c342.49603", "name": "set time global", - "func": "var date = new Date(global.get(msg.topic));\n// From https://stackoverflow.com/a/53752557/2108279\n\n\n// attempt to parse string as time. return js date object\nstring = msg.payload\n\nvar am = null;\n\n// check if \"apm\" or \"pm\" explicitly specified, otherwise null\nif (string.toLowerCase().includes(\"p\")) am = false;\nelse if (string.toLowerCase().includes(\"a\")) am = true;\n\nstring = string.replace(/\\D/g, \"\"); // remove non-digit characters\nstring = string.substring(0, 4); // take only first 4 digits\nif (string.length === 3) string = \"0\" + string; // consider eg \"030\" as \"0030\"\nstring = string.replace(/^00/, \"24\"); // add 24 hours to preserve eg \"0012\" as \"00:12\" instead of \"12:00\", since will be converted to integer\n\nvar time = parseInt(string); // convert to integer\n// default time if all else fails\nvar hours = 12,\nminutes = 0;\n\n// if able to parse as int\nif (Number.isInteger(time)) {\n// treat eg \"4\" as \"4:00pm\" (or \"4:00am\" if \"am\" explicitly specified)\nif (time >= 0 && time <= 12) {\n hours = time;\n minutes = 0;\n // if \"am\" or \"pm\" not specified, establish from number\n if (am === null) {\n if (hours >= 1 && hours <= 12) am = false;\n else am = true;\n }\n}\n// treat eg \"20\" as \"8:00pm\"\nelse if (time >= 13 && time <= 99) {\n hours = time % 24;\n minutes = 0;\n // if \"am\" or \"pm\" not specified, force \"am\"\n if (am === null) am = true;\n}\n// treat eg \"52:95\" as 52 hours 95 minutes \nelse if (time >= 100) {\n hours = Math.floor(time / 100); // take first two digits as hour\n minutes = time % 100; // take last two digits as minute\n // if \"am\" or \"pm\" not specified, establish from number\n if (am === null) {\n if (hours >= 1 && hours <= 12) am = false;\n else am = true;\n }\n}\n\n// add 12 hours if \"pm\"\nif (am === false && hours !== 12) hours += 12;\n// sub 12 hours if \"12:00am\" (midnight), making \"00:00\"\nif (am === true && hours === 12) hours = 0;\n\n// keep hours within 24 and minutes within 60\n// eg 52 hours 95 minutes becomes 4 hours 35 minutes\nhours = hours % 24;\nminutes = minutes % 60;\n}\n\n// convert to js date object\ndate.setHours(hours);\ndate.setMinutes(minutes);\ndate.setSeconds(0);\n\nglobal.set(msg.topic,date.toISOString().split('T')[1].split('.')[0].replace(/:/gi, ''));", + "func": "msg.payload = msg.payload.replace(/\\D/g, \"\"); // remove non-digit characters\nif (msg.payload.length<5) msg.payload += \"00\";\n\nglobal.set(msg.topic,msg.payload);", "outputs": 1, "noerr": 0, "initialize": "", @@ -4888,7 +4759,7 @@ "id": "3e64877a.9684b", "type": "function", "z": "1371dec5.76e671", - "name": "store git rev", + "name": "store version", "func": "msg.payload = \"PlanktoScope v2.2-\"+msg.payload.trim()\n\nglobal.set(\"acq_software\",msg.payload);\n\nreturn msg\n", "outputs": 1, "noerr": 0, @@ -4960,7 +4831,7 @@ "noerr": 0, "initialize": "", "finalize": "", - "x": 300, + "x": 310, "y": 240, "wires": [ [ @@ -4968,20 +4839,6 @@ ] ] }, - { - "id": "5acd51d4.4ab13", - "type": "function", - "z": "baa1e3d9.cb29d", - "name": "get acq_instrument", - "func": "msg.payload = msg.payload.acq_instrument;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "x": 370, - "y": 780, - "wires": [ - [] - ] - }, { "id": "de2c90cf.b73b08", "type": "function", @@ -5121,7 +4978,8 @@ "tosidebar": true, "console": false, "tostatus": false, - "complete": "false", + "complete": "payload", + "targetType": "msg", "statusVal": "", "statusType": "auto", "x": 790, @@ -5190,14 +5048,14 @@ "id": "3269f55f.05d0d2", "type": "function", "z": "b771c342.49603", - "name": "Convert DD to DMS", + "name": "DD to DMS", "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", - "x": 550, - "y": 1240, + "x": 450, + "y": 680, "wires": [ [] ] @@ -5224,661 +5082,10 @@ "payload": "10", "payloadType": "num", "x": 310, - "y": 320, + "y": 280, "wires": [ [ - "d657f11c.c9f07" - ] - ] - }, - { - "id": "25d449c7.eaa3ee", - "type": "mqtt in", - "z": "4ed15f63.9d1468", - "name": "", - "topic": "status/#", - "qos": "0", - "datatype": "json", - "broker": "8dc3722c.06efa8", - "x": 170, - "y": 320, - "wires": [ - [ - "8470d39.987ef3" - ] - ] - }, - { - "id": "5ba11465.0cd9a4", - "type": "switch", - "z": "4ed15f63.9d1468", - "name": "topic filter", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "status/pump", - "vt": "str" - }, - { - "t": "eq", - "v": "status/focus", - "vt": "str" - }, - { - "t": "eq", - "v": "status/imager", - "vt": "str" - }, - { - "t": "cont", - "v": "status/segmenter", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 4, - "x": 460, - "y": 320, - "wires": [ - [ - "6a152db4.21e354", - "d0f14512.fea9c8" - ], - [ - "6a152db4.21e354", - "46a63eb6.be3948" - ], - [ - "18045f2c.7335c1", - "61e3060c.62ccf8" - ], - [ - "f5b2279.156d358" - ] - ] - }, - { - "id": "18045f2c.7335c1", - "type": "switch", - "z": "4ed15f63.9d1468", - "name": "Imaging state", - "property": "payload", - "propertyType": "msg", - "rules": [ - { - "t": "else" - }, - { - "t": "jsonata_exp", - "v": "$contains(msg.payload.status, \"jpg\")\t", - "vt": "jsonata" - } - ], - "checkall": "true", - "repair": false, - "outputs": 2, - "x": 740, - "y": 360, - "wires": [ - [ - "6a152db4.21e354" - ], - [ - "cdf762d8.f081f8" - ] - ] - }, - { - "id": "cdf762d8.f081f8", - "type": "function", - "z": "4ed15f63.9d1468", - "name": "img_counter.js", - "func": "img_counter=global.get('img_counter')\nimg_counter=img_counter+1\nglobal.set('img_counter',img_counter)\nmsg.payload = img_counter\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1000, - "y": 400, - "wires": [ - [ - "333763e6.02dd44", - "e8c2e01c.5f4148" - ] - ] - }, - { - "id": "3ff0a45a.f00bd4", - "type": "function", - "z": "4ed15f63.9d1468", - "name": "obj_counter.js", - "func": "obj_counter=global.get('obj_counter')\nobj_counter=obj_counter+1\nglobal.set('obj_counter',obj_counter)\nmsg.payload = obj_counter\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 1000, - "y": 520, - "wires": [ - [ - "51ea0aaf.ef328c", - "f6aad302.baed5" - ] - ] - }, - { - "id": "f5b2279.156d358", - "type": "switch", - "z": "4ed15f63.9d1468", - "name": "Segmenter", - "property": "topic", - "propertyType": "msg", - "rules": [ - { - "t": "eq", - "v": "status/segmenter", - "vt": "str" - }, - { - "t": "eq", - "v": "status/segmenter/name", - "vt": "str" - }, - { - "t": "eq", - "v": "status/segmenter/object_id", - "vt": "str" - }, - { - "t": "eq", - "v": "status/segmenter/metric", - "vt": "str" - } - ], - "checkall": "true", - "repair": false, - "outputs": 4, - "x": 730, - "y": 500, - "wires": [ - [ - "6a152db4.21e354", - "8ef827ad.d1832" - ], - [ - "66eb0b1d.2e3444" - ], - [ - "3ff0a45a.f00bd4" - ], - [ - "68f3b16.5beabd" - ] - ] - }, - { - "id": "51ea0aaf.ef328c", - "type": "ui_chart", - "z": "4ed15f63.9d1468", - "name": "obj_counter", - "group": "46be9c86.dea684", - "order": 3, - "width": "12", - "height": 2, - "label": "obj_counter", - "chartType": "horizontalBar", - "legend": "false", - "xformat": "HH:mm:ss", - "interpolate": "linear", - "nodata": "Objects count will be shown here once the segmentation is started", - "dot": false, - "ymin": "", - "ymax": "", - "removeOlder": 1, - "removeOlderPoints": "", - "removeOlderUnit": "3600", - "cutout": 0, - "useOneColor": true, - "useUTC": false, - "colors": [ - "#1f77b4", - "#aec7e8", - "#ff7f0e", - "#2ca02c", - "#98df8a", - "#d62728", - "#ff9896", - "#9467bd", - "#c5b0d5" - ], - "useOldStyle": false, - "outputs": 1, - "x": 1470, - "y": 560, - "wires": [ - [] - ] - }, - { - "id": "68f3b16.5beabd", - "type": "function", - "z": "4ed15f63.9d1468", - "name": "ex : area", - "func": "msg.payload=msg.payload.object_area\nmsg.topic=\"area\"\n\nreturn msg;", - "outputs": 1, - "noerr": 0, - "initialize": "", - "finalize": "", - "x": 980, - "y": 560, - "wires": [ - [ - "e299b4f3.c55ce" - ] - ] - }, - { - "id": "5d3095bd.37df6c", - "type": "ui_toast", - "z": "4ed15f63.9d1468", - "position": "top right", - "displayTime": "5", - "highlight": "", - "sendall": true, - "outputs": 0, - "ok": "OK", - "cancel": "", - "raw": false, - "topic": "", - "name": "", - "x": 1490, - "y": 300, - "wires": [] - }, - { - "id": "e299b4f3.c55ce", - "type": "ui_chart", - "z": "4ed15f63.9d1468", - "name": "chart area", - "group": "46be9c86.dea684", - "order": 5, - "width": "12", - "height": 7, - "label": "chart area", - "chartType": "line", - "legend": "false", - "xformat": "HH:mm:ss", - "interpolate": "linear", - "nodata": "Objects area will be shown here once the segmentation is started", - "dot": true, - "ymin": "", - "ymax": "", - "removeOlder": 1, - "removeOlderPoints": "1000", - "removeOlderUnit": "3600", - "cutout": 0, - "useOneColor": false, - "useUTC": true, - "colors": [ - "#1f77b4", - "#aec7e8", - "#ff7f0e", - "#2ca02c", - "#98df8a", - "#d62728", - "#ff9896", - "#9467bd", - "#c5b0d5" - ], - "useOldStyle": false, - "outputs": 1, - "x": 1470, - "y": 600, - "wires": [ - [] - ] - }, - { - "id": "66eb0b1d.2e3444", - "type": "debug", - "z": "4ed15f63.9d1468", - "name": "segmentation name", - "active": true, - "tosidebar": true, - "console": false, - "tostatus": false, - "complete": "true", - "targetType": "full", - "statusVal": "", - "statusType": "auto", - "x": 1010, - "y": 480, - "wires": [] - }, - { - "id": "8470d39.987ef3", - "type": "json", - "z": "4ed15f63.9d1468", - "name": "", - "property": "payload", - "action": "obj", - "pretty": true, - "x": 310, - "y": 320, - "wires": [ - [ - "5ba11465.0cd9a4", - "f5d6c42a.3336e" - ] - ] - }, - { - "id": "1002431c.cf5e25", - "type": "template", - "z": "4ed15f63.9d1468", - "name": "Create sentence", - "field": "payload", - "fieldType": "msg", - "format": "handlebars", - "syntax": "mustache", - "template": "The {{topic}} is {{payload.status}}", - "output": "str", - "x": 1270, - "y": 300, - "wires": [ - [ - "5d3095bd.37df6c" - ] - ] - }, - { - "id": "6a152db4.21e354", - "type": "change", - "z": "4ed15f63.9d1468", - "name": "Remove high-level topic", - "rules": [ - { - "t": "change", - "p": "topic", - "pt": "msg", - "from": "status/", - "fromt": "str", - "to": "", - "tot": "str" - } - ], - "action": "", - "property": "", - "from": "", - "to": "", - "reg": false, - "x": 1030, - "y": 300, - "wires": [ - [ - "1002431c.cf5e25" - ] - ] - }, - { - "id": "f5d6c42a.3336e", - "type": "debug", - "z": "4ed15f63.9d1468", - "d": true, - "name": "segmenter area", - "active": true, - "tosidebar": true, - "console": false, - "tostatus": false, - "complete": "payload", - "targetType": "msg", - "statusVal": "", - "statusType": "auto", - "x": 500, - "y": 580, - "wires": [] - }, - { - "id": "61e3060c.62ccf8", - "type": "ui_text", - "z": "4ed15f63.9d1468", - "group": "70de8209.68416c", - "order": 3, - "width": 5, - "height": 1, - "name": "imager", - "label": "Imager status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 970, - "y": 220, - "wires": [] - }, - { - "id": "8ef827ad.d1832", - "type": "ui_text", - "z": "4ed15f63.9d1468", - "group": "70de8209.68416c", - "order": 4, - "width": 5, - "height": 1, - "name": "segmenter", - "label": "Segmenter status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 990, - "y": 440, - "wires": [] - }, - { - "id": "46a63eb6.be3948", - "type": "ui_text", - "z": "4ed15f63.9d1468", - "group": "70de8209.68416c", - "order": 1, - "width": 5, - "height": 1, - "name": "focus", - "label": "Focus status:", - "format": "{{msg.payload.status}}", - "layout": "col-center", - "x": 970, - "y": 180, - "wires": [] - }, - { - "id": "d0f14512.fea9c8", - "type": 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false, + "topic": "", + "name": "", + "x": 1340, + "y": 680, + "wires": [] + }, + { + "id": "458cd82e.03d258", + "type": "ui_chart", + "z": "cb95299c.2817c8", + "name": "Area chart", + "group": "46be9c86.dea684", + "order": 9, + "width": 12, + "height": 7, + "label": "Objects Area", + "chartType": "line", + "legend": "false", + "xformat": "HH:mm:ss", + "interpolate": "linear", + "nodata": "Objects area will be shown here once the segmentation is started", + "dot": true, + "ymin": "", + "ymax": "", + "removeOlder": 1, + "removeOlderPoints": "1000", + "removeOlderUnit": "3600", + "cutout": 0, + "useOneColor": false, + "useUTC": true, + "colors": [ + "#1f77b4", + "#aec7e8", + "#ff7f0e", + "#2ca02c", + "#98df8a", + "#d62728", + "#ff9896", + "#9467bd", + "#c5b0d5" + ], + "useOldStyle": false, + "outputs": 1, + "x": 1330, + "y": 880, + "wires": [ + [] + ] + }, + { + "id": "49af3d24.1799e4", + "type": "debug", + "z": "cb95299c.2817c8", + "name": "segmentation name", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "true", + "targetType": "full", + "statusVal": "", + "statusType": "auto", + "x": 830, + "y": 760, + "wires": [] + }, + { + "id": "7088a5be.0c79a4", + "type": "template", + "z": "cb95299c.2817c8", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1100, + "y": 680, + "wires": [ + [ + "a4f0f0d1.3aca88" + ] + ] + }, + { + "id": "b9a23b91.93638", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", + "to": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 850, + "y": 680, + "wires": [ + [ + "7088a5be.0c79a4" + ] + ] + }, + { + "id": "6919465f.332e5", + "type": "ui_text", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "order": 1, + "width": 4, + "height": 1, + "name": "segmenter", + "label": "Segmenter status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 810, + "y": 720, + "wires": [] + }, + { + "id": "fa3b7929.ac7da8", + "type": "ui_text", + "z": "cb95299c.2817c8", + "group": "46be9c86.dea684", + "order": 5, + "width": 4, + "height": 1, + "name": "obj_count", + "label": "Objects count", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1320, + "y": 800, + "wires": [] + }, + { + "id": "640ece83.88cab", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "Init graphs", + "props": [ + { + "p": "payload" + }, + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "0", + "payloadType": "num", + "x": 810, + "y": 800, + "wires": [ + [ + "cd10a556.6a9a08" + ] + ] + }, + { + "id": "cd10a556.6a9a08", + "type": "function", + "z": "cb95299c.2817c8", + "name": "obj_counter init", + "func": "obj_counter=0\nglobal.set('obj_counter',obj_counter)\nmsg.payload = obj_counter\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1000, + "y": 800, + "wires": [ + [ + "fa3b7929.ac7da8" + ] + ] + }, + { + "id": "25867454.a8e334", + "type": "link in", + "z": "cb95299c.2817c8", + "name": "Segmenter module status", + "links": [ + "dcf5bd45.16a8d" + ], + "x": 295, + "y": 740, + "wires": [ + [ + "aa38dbbc.cf0a9" + ] + ] + }, + { + "id": "dcf5bd45.16a8d", + "type": "link out", + "z": "9a22e67a.378818", + "name": "Segmenter module status", + "links": [ + "25867454.a8e334" + ], + "x": 795, + "y": 360, + "wires": [] + }, + { + "id": "52af9ac0.60eb24", + "type": "link out", + "z": "b771c342.49603", + "name": "Sample Operator", + "links": [ + "c1d4934c.9bb628" + ], + "x": 815, + "y": 420, + "wires": [] + }, + { + "id": "105e3033.152848", + "type": "exec", + "z": "1371dec5.76e671", + "command": "", + "addpay": true, + "append": "", + "useSpawn": "false", + "timer": "1", + "oldrc": false, + "name": "git user.name", + "x": 1160, + "y": 420, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "cc205a38.f86ea", + "type": "template", + "z": "1371dec5.76e671", + "name": "git config", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "git config --global --replace-all user.name \"{{payload}}\"", + "output": "str", + "x": 980, + "y": 420, + "wires": [ + [ + "105e3033.152848" + ] + ] + }, + { + "id": "c1d4934c.9bb628", + "type": "link in", + "z": "1371dec5.76e671", + "name": "Git config", + "links": [ + "52af9ac0.60eb24" + ], + "x": 875, + "y": 420, + "wires": [ + [ + "cc205a38.f86ea" + ] + ] + }, + { + "id": "892fcd9b.d34a1", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 1, + "x": 1440, + "y": 840, + "wires": [ + [] + ] + }, + { + "id": "9bd72495.a8a098", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 4, + "width": 5, + "height": 1, + "name": "Imaged volume", + "label": "Imaged volume", + "format": "{{msg.payload}}", + "layout": "row-spread", + "x": 1120, + "y": 260, + "wires": [] + }, + { + "id": "99b11fe4.2795d", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Volume calc", + "func": "msg.payload = ((4.15*3.14*msg.payload/1000) / 1000).toFixed(4) + \" mL\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 930, + "y": 260, + "wires": [ + [ + "9bd72495.a8a098" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" + }, + { + "id": "8e16aa2f.e40398", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 5, + "width": 5, + "height": 1, + "name": "Pump volume", + "label": "Pump volume", + "format": "{{msg.payload}}", + "layout": "row-spread", + "x": 1180, + "y": 300, + "wires": [] + }, + { + "id": "67091ac0.8f9f6c", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "pump volume calc", + "func": "var acq_volume = global.get(\"acq_volume\");\nvar nb_frame = global.get(\"nb_frame\");\n\nvar pump_volume = Math.max((Number(acq_volume) / Number(nb_frame)), 0.01).toFixed(4)\n\nglobal.set(\"imaging_pump_volume\", pump_volume)\n\nmsg.payload = pump_volume + \" mL per frame\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 950, + "y": 300, + "wires": [ + [ + "8e16aa2f.e40398", + "f62d9622.621318" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" + }, + { + "id": "f62d9622.621318", + "type": "debug", + "z": "baa1e3d9.cb29d", + "name": "", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "false", + "statusVal": "", + "statusType": "auto", + "x": 1210, + "y": 360, + "wires": [] } ] \ No newline at end of file