diff --git a/flows/flow_villefranche.json b/flows/flow_villefranche.json
deleted file mode 100644
index 55de97d..0000000
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- "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
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- "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nvolume = int(msg[\"volume\"])\norientation = str(msg[\"orientation\"])\nflowrate = float(msg[\"flowrate\"])\n\nkit = MotorKit()\n\npump_stepper = kit.stepper1\n\npump_stepper.release()\n\n \nif orientation == \"forward\":\n orientation=stepper.BACKWARD\nif orientation == \"backward\":\n orientation=stepper.FORWARD\n \nnb_step=volume*507 #if sleep(0.05) in between 2 steps\n#35000steps for 69g\n \n#nb_step=vol*460 if sleep(0) in between 2 steps\nduration=(volume*60)/flowrate\n \ndelay=(duration/nb_step)-0.005\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=orientation, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg",
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- "order": 3,
- "width": 0,
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- "type": "ui_numeric",
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- "label": "Min fraction size (μm)",
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- "group": "404c301a.19c4e",
- "order": 2,
- "width": 5,
- "height": 1,
- "wrap": false,
- "passthru": true,
- "topic": "acq_minimum_mesh",
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- "color": "#AD1625",
- "bgcolor": "white",
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- "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nreturn msg;",
- "outputs": 1,
- "x": 880,
- "y": 120,
- "wires": [
- [
- "154d5ce1.81ed03"
- ]
- ]
- },
- {
- "id": "154d5ce1.81ed03",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "set free",
- "func": "global.set(\"state\",\"free\");\nreturn msg",
- "outputs": 1,
- "noerr": 0,
- "x": 1020,
- "y": 120,
- "wires": [
- [
- "44094d9d.62c6c4"
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- ]
- },
- {
- "id": "f07dec1d.147ce",
- "type": "ui_text_input",
- "z": "baa1e3d9.cb29d",
- "name": "comment",
- "label": "Comment",
- "tooltip": "",
- "group": "b7919ae2.c01788",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "text",
- "delay": 300,
- "topic": "comment",
- "x": 160,
- "y": 260,
- "wires": [
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- ]
- ]
- },
- {
- "id": "8bd55b54.8e3938",
- "type": "file",
- "z": "baa1e3d9.cb29d",
- "name": "logs.json",
- "filename": "/var/www/logs.json",
- "appendNewline": false,
- "createDir": false,
- "overwriteFile": "false",
- "encoding": "none",
- "x": 2000,
- "y": 1340,
- "wires": [
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- },
- {
- "id": "99fd2803.0843a8",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "get global",
- "func": "msg.payload = {\n \"comment\":global.get(\"comment\"),\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \"sample_hour\":global.get(\"sample_hour\"),\n \"sample_minute\":global.get(\"sample_minute\"),\n \"sample_day\":global.get(\"sample_day\"),\n \"sample_month\":global.get(\"sample_month\"),\n \"sample_year\":global.get(\"sample_year\"),\n \n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\"),\n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"process_pixel\":global.get(\"process_pixel\"),\n \n \"acq_camera\":global.get(\"acq_camera\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_instrument_ID\":global.get(\"acq_instrument_ID\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_flowrate\":global.get(\"sug_flowrate\")\n }\n\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1820,
- "y": 1340,
- "wires": [
- [
- "8bd55b54.8e3938"
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- ]
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- {
- "id": "ae692178.d44d1",
- "type": "python3-function",
- "z": "baa1e3d9.cb29d",
- "name": "pump.py",
- "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\npump_stepper.release()\n\nstate = str(msg[\"state\"])\nvolume = int(msg[\"volume\"])\norientation = str(msg[\"orientation\"])\nflowrate = float(msg[\"flowrate\"])\n\n\nif(state==\"free\"):\n #35000steps will pass 69ml if sleep(0.05) in between 2 steps\n #1ml is about 35000/69=507steps\n nb_step=volume*507 \n #nb_step=vol*460 if sleep(0) in between 2 steps\n \n duration=(volume*60)/flowrate\n \n delay=(duration/nb_step)-0.005\n \nif(state==\"canceled\"):\n nb_step=0\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg",
- "outputs": 1,
- "x": 1240,
- "y": 1260,
- "wires": [
- [
- "783209c7.51c5a8"
- ]
- ]
- },
- {
- "id": "a3fd6b29.2ef5f8",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "pump.js",
- "func": "state = global.get(\"state\");\n\nif (state == null){\n state=\"free\"\n}\n\nif(state===\"free\"||state===\"canceled\"){\n volume = global.get(\"acq_volume\");\n flowrate = global.get(\"sug_flowrate\");\n duration=(((volume*60)/flowrate)-2)*1000\n global.set(\"duration\",duration);\n \n msg.volume = volume;\n msg.orientation = \"forward\";\n msg.flowrate = flowrate;\n msg.rgb = {r:0, g:255, b:255}\n msg.state = state\n \n return msg;\n \n \n}",
- "outputs": 1,
- "noerr": 0,
- "x": 1040,
- "y": 1360,
- "wires": [
- [
- "ae692178.d44d1",
- "e0f9efda.fa4ce"
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- "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
- },
- {
- "id": "e0f9efda.fa4ce",
- "type": "python3-function",
- "z": "baa1e3d9.cb29d",
- "name": "actuate RGB",
- "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nrgb=msg['rgb']\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nreturn msg;",
- "outputs": 1,
- "x": 1250,
- "y": 1200,
- "wires": [
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- ]
- ]
- },
- {
- "id": "7baf5071.dc3b2",
- "type": "exec",
- "z": "baa1e3d9.cb29d",
- "command": "i2cdetect -y 1",
- "addpay": false,
- "append": "",
- "useSpawn": "false",
- "timer": "1",
- "oldrc": false,
- "name": "i2c update",
- "x": 1570,
- "y": 1200,
- "wires": [
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- "id": "783209c7.51c5a8",
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- "links": [
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- "x": 1335,
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- {
- "id": "3b498e72.6e6292",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "set busy",
- "func": "global.set(\"state\",\"busy\");\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1420,
- "y": 1200,
- "wires": [
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- "position": "dialog",
- "displayTime": "3",
- "highlight": "",
- "sendall": true,
- "outputs": 1,
- "ok": "OK",
- "cancel": "",
- "raw": false,
- "topic": "",
- "name": "",
- "x": 1010,
- "y": 1200,
- "wires": [
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- "type": "switch",
- "z": "baa1e3d9.cb29d",
- "name": "",
- "property": "topic",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "Missing entry :",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Start",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 2,
- "x": 850,
- "y": 1220,
- "wires": [
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- [
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- },
- {
- "id": "c6bd5987.c48f78",
- "type": "http request",
- "z": "baa1e3d9.cb29d",
- "name": "Start timelapse",
- "method": "GET",
- "ret": "txt",
- "paytoqs": false,
- "url": "http://127.0.0.1/html/cmd_pipe.php?cmd=tl%201",
- "tls": "",
- "persist": false,
- "proxy": "",
- "authType": "",
- "x": 1100,
- "y": 1600,
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- },
- {
- "id": "8c15fd05.81b5",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "get duration acquisition",
- "func": "msg.delay = global.get(\"duration\");\n\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1290,
- "y": 1360,
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- "type": "delay",
- "z": "baa1e3d9.cb29d",
- "name": "wait duration",
- "pauseType": "delayv",
- "timeout": "1",
- "timeoutUnits": "seconds",
- "rate": "1",
- "nbRateUnits": "1",
- "rateUnits": "second",
- "randomFirst": "1",
- "randomLast": "5",
- "randomUnits": "seconds",
- "drop": false,
- "x": 1510,
- "y": 1360,
- "wires": [
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- "type": "delay",
- "z": "baa1e3d9.cb29d",
- "name": "",
- "pauseType": "delay",
- "timeout": "500",
- "timeoutUnits": "milliseconds",
- "rate": "1",
- "nbRateUnits": "1",
- "rateUnits": "second",
- "randomFirst": "1",
- "randomLast": "5",
- "randomUnits": "seconds",
- "drop": false,
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- "z": "baa1e3d9.cb29d",
- "name": "",
- "group": "b5d61bc7.54fe48",
- "order": 1,
- "width": 10,
- "height": 2,
- "gtype": "donut",
- "title": "",
- "label": "%",
- "format": "{{value}}",
- "min": 0,
- "max": "100",
- "colors": [
- "#ffffff",
- "#ffffff",
- "#097479"
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- "seg1": "",
- "seg2": "",
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- "wires": []
- },
- {
- "id": "34929df1.bfe602",
- "type": "trigger",
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- "op1": "1",
- "op2": "0",
- "op1type": "str",
- "op2type": "str",
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- "units": "s",
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- "bytopic": "all",
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- {
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- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "stop",
- "func": "global.set(\"time_to_wait\",0);\nmsg.payload=\"done\";\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1810,
- "y": 1500,
- "wires": [
- [
- "34929df1.bfe602",
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- {
- "id": "e98903d2.f35c1",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "pulse",
- "func": "var time_to_wait= global.get(\"time_to_wait\");\n\nif (time_to_wait === undefined || time_to_wait === \"\"|| time_to_wait == NaN) {\n time_to_wait=0\n global.set(\"time_to_wait\",time_to_wait);\n}else {\n time_to_wait++;\n global.set(\"time_to_wait\",time_to_wait);\n duration=global.get(\"duration\")/1000;\n percent=(100* time_to_wait/duration).toFixed(0)\n msg.payload=percent;\n return msg;\n \n}",
- "outputs": 1,
- "noerr": 0,
- "x": 2110,
- "y": 1600,
- "wires": [
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- {
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- "links": [
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- },
- {
- "id": "8f991d2e.6e8f3",
- "type": "exec",
- "z": "baa1e3d9.cb29d",
- "command": "ls -l /var/www/html/media | grep \"th\" | tail -1 | awk -F \" \" '{print $9}' | awk -F \"_\" '{print $1\"_\"$2}'| tr -d \"\\n\"",
- "addpay": false,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "get thumbail name",
- "x": 1850,
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- "id": "e6a12f33.c7768",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "mkdir",
- "func": "acq_id=global.get(\"acq_id\")\nmsg.payload=\"/var/www/\"+acq_id\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1770,
- "y": 1140,
- "wires": [
- [
- "43c69256.b9633c"
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- "id": "43c69256.b9633c",
- "type": "exec",
- "z": "baa1e3d9.cb29d",
- "command": "mkdir",
- "addpay": true,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "mkdir acq_id",
- "x": 1910,
- "y": 1140,
- "wires": [
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- },
- {
- "id": "517f13e8.e0793c",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "move",
- "func": "file_prefix=msg.payload;\nacq_id=global.get(\"acq_id\")\nmsg.payload=\"/var/www/html/media/\"+file_prefix+\"* /var/www/\"+acq_id+\"/\";\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 2330,
- "y": 1240,
- "wires": [
- [
- "83a1d49e.a29a48"
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- "z": "baa1e3d9.cb29d",
- "name": "",
- "pauseType": "delay",
- "timeout": "200",
- "timeoutUnits": "milliseconds",
- "rate": "1",
- "nbRateUnits": "1",
- "rateUnits": "second",
- "randomFirst": "1",
- "randomLast": "5",
- "randomUnits": "seconds",
- "drop": false,
- "x": 2090,
- "y": 1260,
- "wires": [
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- "517f13e8.e0793c"
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- ]
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- {
- "id": "83a1d49e.a29a48",
- "type": "exec",
- "z": "baa1e3d9.cb29d",
- "command": "mv",
- "addpay": true,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "",
- "x": 2480,
- "y": 1260,
- "wires": [
- [],
- [],
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- ]
- },
- {
- "id": "20a2d27e.7ccafe",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "move",
- "func": "file_prefix=msg.payload;\nacq_id=global.get(\"acq_id\")\nmsg.payload=\"/var/www/logs.json /var/www/\"+acq_id+\"/\";\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 2330,
- "y": 1320,
- "wires": [
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- "z": "baa1e3d9.cb29d",
- "command": "mv",
- "addpay": true,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "",
- "x": 2480,
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- "wires": [
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- },
- {
- "id": "d91229e3.bf0f18",
- "type": "while-loop",
- "z": "baa1e3d9.cb29d",
- "name": "",
- "condi": "global.get(\"job\")===\"run\"",
- "x": 1330,
- "y": 200,
- "wires": [
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- "a61b71c3.afaf"
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- },
- {
- "id": "217ff214.a25c2e",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "Run",
- "func": "global.set(\"job\",\"run\")\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1030,
- "y": 220,
- "wires": [
- [
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- {
- "id": "995fa523.83cba8",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "Stop",
- "func": "global.set(\"job\",\"stop\")\nmsg.payload=\"stop\"\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1030,
- "y": 180,
- "wires": [
- [
- "d91229e3.bf0f18"
- ]
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- {
- "id": "d3ab1a14.86b8b8",
- "type": "python3-function",
- "z": "baa1e3d9.cb29d",
- "name": "pump.py",
- "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\npump_stepper.release()\n\nstate = str(msg[\"state\"])\nvolume = int(msg[\"volume\"])\norientation = str(msg[\"orientation\"])\nflowrate = float(msg[\"flowrate\"])\n\n\nif(state==\"free\"):\n #35000steps will pass 69ml if sleep(0.05) in between 2 steps\n #1ml is about 35000/69=507steps\n nb_step=volume*507 \n #nb_step=vol*460 if sleep(0) in between 2 steps\n \n duration=(volume*60)/flowrate\n \n delay=(duration/nb_step)-0.005\n \nif(state==\"canceled\"):\n nb_step=0\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg",
- "outputs": 1,
- "x": 1380,
- "y": 520,
- "wires": [
- [
- "444587e4.dc23a8"
- ]
- ]
- },
- {
- "id": "ff805ffc.f9134",
- "type": "python3-function",
- "z": "baa1e3d9.cb29d",
- "name": "actuate RGB",
- "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nrgb=msg['rgb']\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nreturn msg;",
- "outputs": 1,
- "x": 1390,
- "y": 460,
- "wires": [
- [
- "a27b3163.19c31"
- ]
- ]
- },
- {
- "id": "444587e4.dc23a8",
- "type": "link out",
- "z": "baa1e3d9.cb29d",
- "name": "",
- "links": [
- "e1354861.0bb648",
- "2bc762dd.1115ce",
- "a50134c.ed45ac8",
- "17d09d70.b50223"
- ],
- "x": 1475,
- "y": 520,
- "wires": []
- },
- {
- "id": "a27b3163.19c31",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "set busy",
- "func": "global.set(\"state\",\"busy\");\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1560,
- "y": 460,
- "wires": [
- []
- ]
- },
- {
- "id": "7c974057.4d3f",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "get duration acquisition",
- "func": "msg.delay = global.get(\"duration\");\n\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1430,
- "y": 620,
- "wires": [
- []
- ]
- },
- {
- "id": "482c8e09.a77df",
- "type": "python3-function",
- "z": "baa1e3d9.cb29d",
- "name": "pump.py",
- "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\n\npump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.SIMPLE)\nsleep(0.1)",
- "outputs": 1,
- "x": 1820,
- "y": 280,
- "wires": [
- []
- ]
- },
- {
- "id": "427871db.b4902",
- "type": "debug",
- "z": "baa1e3d9.cb29d",
- "name": "",
- "active": true,
- "tosidebar": true,
- "console": false,
- "tostatus": false,
- "complete": "false",
- "x": 1850,
- "y": 220,
- "wires": []
- },
- {
- "id": "a61b71c3.afaf",
- "type": "trigger",
- "z": "baa1e3d9.cb29d",
- "op1": "1",
- "op2": "0",
- "op1type": "str",
- "op2type": "str",
- "duration": "-250",
- "extend": false,
- "units": "ms",
- "reset": "stop",
- "bytopic": "all",
- "name": "",
- "x": 1620,
- "y": 280,
- "wires": [
- [
- "482c8e09.a77df"
- ]
- ]
- },
- {
- "id": "f7fa6acf.f6ed28",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "pump.js",
- "func": "state = global.get(\"state\");\n\nif (state == null){\n state=\"free\"\n}\n\nif(state===\"free\"||state===\"canceled\"){\n volume = global.get(\"acq_volume\");\n flowrate = global.get(\"sug_flowrate\");\n duration=(((volume*60)/flowrate)-2)*1000\n global.set(\"duration\",duration);\n \n msg.volume = volume;\n msg.orientation = \"forward\";\n msg.flowrate = flowrate;\n msg.rgb = {r:0, g:255, b:255}\n msg.state = state\n \n return msg;\n \n \n}",
- "outputs": 1,
- "noerr": 0,
- "x": 1100,
- "y": 340,
- "wires": [
- [
- "dd817ccf.04ec"
- ]
- ],
- "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
- },
- {
- "id": "dd817ccf.04ec",
- "type": "python3-function",
- "z": "baa1e3d9.cb29d",
- "name": "pump.py",
- "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\npump_stepper.release()\n\nstate = str(msg[\"state\"])\nvolume = int(msg[\"volume\"])\nflowrate = float(msg[\"flowrate\"])\n\n\nif(state==\"free\"):\n #35000steps will pass 69ml if sleep(0.05) in between 2 steps\n #1ml is about 35000/69=507steps\n nb_step=volume*507 \n #nb_step=vol*460 if sleep(0) in between 2 steps\n \n duration=(volume*60)/flowrate\n \n delay=(duration/nb_step)-0.005\n \nif(state==\"canceled\"):\n nb_step=0\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg",
- "outputs": 1,
- "x": 1280,
- "y": 340,
- "wires": [
- []
- ]
- },
- {
- "id": "7a5b8294.92ad3c",
- "type": "ui_button",
- "z": "baa1e3d9.cb29d",
- "name": "",
- "group": "b7919ae2.c01788",
- "order": 4,
- "width": 5,
- "height": 1,
- "passthru": false,
- "label": "Show",
- "tooltip": "",
- "color": "#097479",
- "bgcolor": "white",
- "icon": "keyboard_tab",
- "payload": "",
- "payloadType": "str",
- "topic": "",
- "x": 470,
- "y": 380,
- "wires": [
- [
- "e2919164.70927"
- ]
- ]
- },
- {
- "id": "29be525e.0c87fe",
- "type": "ui_template",
- "z": "baa1e3d9.cb29d",
- "group": "b5d61bc7.54fe48",
- "name": "show global",
- "order": 2,
- "width": 0,
- "height": 0,
- "format": "\n \n
",
- "storeOutMessages": true,
- "fwdInMessages": true,
- "templateScope": "local",
- "x": 750,
- "y": 380,
- "wires": [
- []
- ]
- },
- {
- "id": "e2919164.70927",
- "type": "function",
- "z": "baa1e3d9.cb29d",
- "name": "get global",
- "func": "msg.payload = {\n \"comment\":global.get(\"comment\"),\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \"sample_hour\":global.get(\"sample_hour\"),\n \"sample_minute\":global.get(\"sample_minute\"),\n \"sample_day\":global.get(\"sample_day\"),\n \"sample_month\":global.get(\"sample_month\"),\n \"sample_year\":global.get(\"sample_year\"),\n \n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\"),\n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"process_pixel\":global.get(\"process_pixel\"),\n \n \"acq_camera\":global.get(\"acq_camera\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_instrument_ID\":global.get(\"acq_instrument_ID\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_flowrate\":global.get(\"sug_flowrate\")\n }\n\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 600,
- "y": 380,
- "wires": [
- [
- "29be525e.0c87fe",
- "295bd912.8d2556"
- ]
- ]
- },
- {
- "id": "295bd912.8d2556",
- "type": "debug",
- "z": "baa1e3d9.cb29d",
- "name": "",
- "active": true,
- "tosidebar": true,
- "console": false,
- "tostatus": false,
- "complete": "false",
- "x": 760,
- "y": 440,
- "wires": []
- },
- {
- "id": "7ca7754c.0f731c",
- "type": "inject",
- "z": "eaae323a.31b3",
- "name": "",
- "topic": "",
- "payload": "",
- "payloadType": "date",
- "repeat": "",
- "crontab": "",
- "once": false,
- "onceDelay": 0.1,
- "x": 120,
- "y": 420,
- "wires": [
- [
- "4c6d21e3.0173c"
- ]
- ]
- },
- {
- "id": "cbb8afed.0a026",
- "type": "rpi-gpio out",
- "z": "bccd1f23.87219",
- "name": "",
- "pin": "40",
- "set": "",
- "level": "0",
- "freq": "",
- "out": "out",
- "x": 280,
- "y": 80,
- "wires": []
- },
- {
- "id": "4c6d21e3.0173c",
- "type": "function",
- "z": "eaae323a.31b3",
- "name": "",
- "func": "var d = new Date();\nvar t = d.getTime();\npayload={\"time\":\"message\",\"timestamp\":msg.payload}\nmsg.payload=payload;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 250,
- "y": 420,
- "wires": [
- [
- "c82b48ad.8b5478"
- ]
- ]
- },
- {
- "id": "a256071b.25a008",
- "type": "file",
- "z": "eaae323a.31b3",
- "name": "",
- "filename": "/home/pi/Desktop/log/test.log",
- "appendNewline": true,
- "createDir": true,
- "overwriteFile": "false",
- "encoding": "none",
- "x": 600,
- "y": 420,
- "wires": [
- [
- "3cd4bf1e.11ae3"
- ]
- ]
- },
- {
- "id": "3cd4bf1e.11ae3",
- "type": "debug",
- "z": "eaae323a.31b3",
- "name": "",
- "active": true,
- "tosidebar": true,
- "console": false,
- "tostatus": false,
- "complete": "false",
- "x": 950,
- "y": 420,
- "wires": []
- },
- {
- "id": "c82b48ad.8b5478",
- "type": "csv",
- "z": "eaae323a.31b3",
- "name": "",
- "sep": ",",
- "hdrin": true,
- "hdrout": "",
- "multi": "one",
- "ret": "\\n",
- "temp": "timestamp,time",
- "skip": "0",
- "strings": true,
- "x": 390,
- "y": 420,
- "wires": [
- [
- "a256071b.25a008"
- ]
- ]
- }
-]