Add files via upload
This commit is contained in:
parent
db23d48f8d
commit
aa23d66bd2
|
@ -21,6 +21,34 @@ Example:
|
|||
|
||||
python3.7 $HOME/PlanktonScope/scripts/pump.py 1 10 suck
|
||||
|
||||
_________________
|
||||
### Image
|
||||
##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`
|
||||
|
||||
- `in_path` : **string** - directory to store acquisitions **the path has to end with /**
|
||||
- `sample_project` : **string**
|
||||
- `sample_id` : **string**
|
||||
- `acq_id` : **string**
|
||||
- `volume` : **integer**
|
||||
- `flowrate` : **float**
|
||||
|
||||
Example:
|
||||
|
||||
python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2
|
||||
|
||||
|
||||
_________________
|
||||
|
||||
### Light
|
||||
##### light.py `state`
|
||||
|
||||
- `state` : **string**
|
||||
|
||||
Example:
|
||||
|
||||
python3.7 $HOME/PlanktonScope/scripts/light.py on
|
||||
|
||||
|
||||
_________________
|
||||
### Killing Focus or Pump event
|
||||
##### killer.sh `event_to_kill.py`
|
||||
|
@ -32,20 +60,6 @@ Example:
|
|||
|
||||
bash $HOME/PlanktonScope/scripts/killer.sh pump.py
|
||||
|
||||
_________________
|
||||
### Image
|
||||
##### image.py `sample_project` `sample_id` `acq_id` `volume` `flowrate`
|
||||
|
||||
-`sample_project` : **string**
|
||||
- `sample_id` : **string**
|
||||
- `acq_id` : **string**
|
||||
- `volume` : **integer**
|
||||
- `flowrate` : **float**
|
||||
|
||||
Example:
|
||||
|
||||
python3.7 $HOME/PlanktonScope/scripts/pump.py tara_pacific station_125 exp_1 24 3.2
|
||||
|
||||
_________________
|
||||
### Kill Image
|
||||
##### kill_image.sh image.py `sample_project` `sample_id` `acq_id`
|
||||
|
@ -58,13 +72,3 @@ Example:
|
|||
|
||||
bash $HOME/PlanktonScope/scripts/killer.sh image.py tara_pacific station_125 exp_1
|
||||
|
||||
_________________
|
||||
|
||||
### Light
|
||||
##### light.py `state`
|
||||
|
||||
- `state` : **string**
|
||||
|
||||
Example:
|
||||
|
||||
python3.7 $HOME/PlanktonScope/scripts/light.py on
|
||||
|
|
|
@ -11,20 +11,22 @@ from datetime import datetime, timedelta
|
|||
import os
|
||||
import sys
|
||||
|
||||
in_path = str(sys.argv[1])
|
||||
|
||||
#[t] : ex:tara_pacific
|
||||
sample_project = str(sys.argv[1])
|
||||
sample_project = str(sys.argv[2])
|
||||
|
||||
#[t] : unique identifier
|
||||
sample_id = str(sys.argv[2])
|
||||
sample_id = str(sys.argv[3])
|
||||
|
||||
#[t] : unique identifier
|
||||
acq_id = str(sys.argv[3])
|
||||
acq_id = str(sys.argv[4])
|
||||
|
||||
#[i] : ex:24ml
|
||||
volume = int(sys.argv[4])
|
||||
volume = int(sys.argv[5])
|
||||
|
||||
#[f] : ex:3.2ml/min
|
||||
flowrate = float(sys.argv[5])
|
||||
flowrate = float(sys.argv[6])
|
||||
|
||||
warm_up_duration=3
|
||||
|
||||
|
@ -34,7 +36,7 @@ max_fps = 0.7
|
|||
|
||||
nb_frame = int(duration/max_fps)
|
||||
|
||||
path= "/home/pi/"+sample_project+"/"+sample_id+"/"+acq_id+"/"
|
||||
path= in_path+sample_project+"/"+sample_id+"/"+acq_id+"/"
|
||||
|
||||
if not os.path.exists(path):
|
||||
os.makedirs(path)
|
||||
|
|
|
@ -3,6 +3,6 @@
|
|||
|
||||
scrip_name=$1
|
||||
|
||||
kill -9 `ps ax | grep "$scrip_name" | head -1 | awk '{print $1}'
|
||||
kill -9 `ps ax | grep "$scrip_name" | head -1 | awk '{print $1}'`
|
||||
|
||||
python3.7 $HOME/PlanktonScope/scripts/recover.py
|
||||
|
|
Loading…
Reference in a new issue