Create StackFlow_v3.py
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scripts/StackFlow_v3.py
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116
scripts/StackFlow_v3.py
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#!/usr/bin/env python
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# coding: utf-8
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################################################################################
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# A) Import the librairies needed to execute the script
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################################################################################
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#Activate pinout to control the LEDs and the RELAY
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from gpiozero import LED
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#Allow to access the I2C BUS from the Raspberry Pi
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import smbus
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#Time librairy in order to sleep when need
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from time import sleep
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#Picamera library to take images
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from picamera import PiCamera
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#Enable calculation of remaining duration and datetime
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from datetime import datetime, timedelta
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#Enable creation of new folders
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import os
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from adafruit_motor import stepper
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from adafruit_motorkit import MotorKit
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from time import sleep
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kit = MotorKit()
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pump_stepper = kit.stepper1
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pump_stepper.release()
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################################################################################
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# C) Configuration file
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################################################################################
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camera = PiCamera()
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camera.resolution = (3280, 2464)
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camera.iso = 60
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sleep(3)
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camera.shutter_speed = 300
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camera.exposure_mode = 'off'
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g = camera.awb_gains
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camera.awb_mode = 'off'
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camera.awb_gains = g
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nb_frame=2000
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pump_stepper.release()
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################################################################################
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# E) Define simple functions making the whole sequence
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###
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################################################################################
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print("###############")
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print("IMAGING")
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print("###############")
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#Inform on the statut of the operation
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print("Imaging : engaged")
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#start the preview only during the acquisition
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camera.start_preview(fullscreen=False, window = (160, 0, 640, 480))
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#get the actual date
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date_now = datetime.now().strftime("%m_%d_%Y")
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day_now="/home/pi/Desktop/PlanktonScope_acquisition/"+str(date_now)
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#create a directory if the directory doesn't exist yet
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if not os.path.exists(day_now):
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os.makedirs(day_now)
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#get the actual date
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hour_now = datetime.now().strftime("%H")
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hour="/home/pi/Desktop/PlanktonScope_acquisition/"+str(date_now)+"/"+str(hour_now)
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#create a directory if the directory doesn't exist yet
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if not os.path.exists(hour):
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os.makedirs(hour)
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#allow the camera to warm up
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for i in range(200):
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pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.SINGLE)
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sleep(0.01)
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for frame in range(nb_frame):
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#get the time now
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time = datetime.now().strftime("%M_%S_%f")
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#create a filename from the date and the time
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filename="/home/pi/Desktop/PlanktonScope_acquisition/"+str(date_now)+"/"+str(hour_now)+"/"+str(time)+".jpg"
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#capture an image with the specified filename
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camera.capture(filename)
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#wait to complete the imaging process and print info on the terminal
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print("Imaging : "+str(frame)+"/"+str(nb_frame))
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for i in range(10):
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pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.SINGLE)
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sleep(0.01)
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sleep(0.5)
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#stop the preview during the rest of the sequence
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camera.stop_preview()
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pump_stepper.release()
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#Inform on the statut of the operation
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print("Imaging : done")
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################################################################################
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#################################################
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# F) Execute the sequence
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################################################################################
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