From ba0cf44e74ff3963154b33872ba7093fc8b99eb0 Mon Sep 17 00:00:00 2001
From: tpollina <thibaut.pollina@gmail.com>
Date: Tue, 4 Feb 2020 20:59:16 -0800
Subject: [PATCH] Update mqtt_nodered.json

---
 scripts/mqtt_nodered.json | 4037 +------------------------------------
 1 file changed, 1 insertion(+), 4036 deletions(-)

diff --git a/scripts/mqtt_nodered.json b/scripts/mqtt_nodered.json
index d77d728..abeb85e 100644
--- a/scripts/mqtt_nodered.json
+++ b/scripts/mqtt_nodered.json
@@ -1,4036 +1 @@
-[
-    {
-        "id": "259c8713.b50e28",
-        "type": "tab",
-        "label": "Main",
-        "disabled": false,
-        "info": ""
-    },
-    {
-        "id": "6d0d6fc7.d30bb",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "sample_ship",
-        "label": "Name of the ship",
-        "tooltip": "",
-        "group": "3e1ba03d.f01d8",
-        "order": 3,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "text",
-        "delay": 300,
-        "topic": "sample_ship",
-        "x": 1370,
-        "y": 140,
-        "wires": [
-            [
-                "de9708c2.d00068"
-            ]
-        ]
-    },
-    {
-        "id": "43b12fe4.c5aa3",
-        "type": "ui_dropdown",
-        "z": "259c8713.b50e28",
-        "name": "sample_sampling_gear",
-        "label": "Sampling gear",
-        "tooltip": "",
-        "place": "Select",
-        "group": "3e1ba03d.f01d8",
-        "order": 5,
-        "width": 0,
-        "height": 0,
-        "passthru": true,
-        "options": [
-            {
-                "label": "Plankton net",
-                "value": "net",
-                "type": "str"
-            },
-            {
-                "label": "Niskin bottle 12L",
-                "value": "niskin_12L",
-                "type": "str"
-            },
-            {
-                "label": "Niskin bottle 24L",
-                "value": "niskin_24L",
-                "type": "str"
-            },
-            {
-                "label": "Pass Hull",
-                "value": "pass_hull",
-                "type": "str"
-            }
-        ],
-        "payload": "",
-        "topic": "sample_sampling_gear",
-        "x": 1330,
-        "y": 220,
-        "wires": [
-            [
-                "3c6a723.145778e"
-            ]
-        ]
-    },
-    {
-        "id": "458408d7.2b3b68",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "sample_operator",
-        "label": "Name of the operator",
-        "tooltip": "",
-        "group": "3e1ba03d.f01d8",
-        "order": 4,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "text",
-        "delay": 300,
-        "topic": "sample_operator",
-        "x": 1350,
-        "y": 180,
-        "wires": [
-            [
-                "a2ae6c99.188f2"
-            ]
-        ]
-    },
-    {
-        "id": "a163194f.0b17c8",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "sample_project",
-        "label": "Name of the project*",
-        "tooltip": "",
-        "group": "3e1ba03d.f01d8",
-        "order": 1,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "text",
-        "delay": 300,
-        "topic": "sample_project",
-        "x": 1360,
-        "y": 60,
-        "wires": [
-            [
-                "1c2c7439.47115c"
-            ]
-        ]
-    },
-    {
-        "id": "914752eb.af1b",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "sample_id",
-        "label": "ID of the station*",
-        "tooltip": "",
-        "group": "3e1ba03d.f01d8",
-        "order": 2,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "number",
-        "delay": 300,
-        "topic": "sample_id",
-        "x": 1370,
-        "y": 100,
-        "wires": [
-            [
-                "30648de6.8ebc52"
-            ]
-        ]
-    },
-    {
-        "id": "8a735175.23927",
-        "type": "ui_date_picker",
-        "z": "259c8713.b50e28",
-        "name": "acq_date",
-        "label": "Date :",
-        "group": "52159161.72187",
-        "order": 2,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "topic": "",
-        "x": 1380,
-        "y": 1141,
-        "wires": [
-            [
-                "86aa9817.45a2e8"
-            ]
-        ]
-    },
-    {
-        "id": "16d7de1c.b0c892",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "acq_time",
-        "label": "Time :",
-        "tooltip": "",
-        "group": "52159161.72187",
-        "order": 3,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "time",
-        "delay": 300,
-        "topic": "",
-        "x": 1380,
-        "y": 1181,
-        "wires": [
-            [
-                "9b1b260f.e4b338"
-            ]
-        ]
-    },
-    {
-        "id": "9b1b260f.e4b338",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "set object_time",
-        "func": "var time = new Date(msg.payload);\n\nvar hour = time.getUTCHours();\nif (hour<10){hour = \"0\"+hour;}\nvar minute = time.getUTCMinutes();\nif (minute<10){minute = \"0\"+minute;}\n\nvar time_UTC = \"\"+hour+minute+\"00\";\nglobal.set('object_time',time_UTC);\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1544,
-        "y": 1181,
-        "wires": [
-            [
-                "829cc940.327648"
-            ]
-        ]
-    },
-    {
-        "id": "86aa9817.45a2e8",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "set object_date",
-        "func": "var date = new Date(msg.payload);\n\nvar year = date.getUTCFullYear();\nvar month = date.getUTCMonth()+1;\nif (month<10){month = \"0\"+month;}\nvar day = date.getUTCDate();\nif (day<10){day = \"0\"+day;}\n\nvar date_UTC = \"\"+year+month+day;\nglobal.set('object_date',date_UTC);\n\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1544,
-        "y": 1141,
-        "wires": [
-            [
-                "c93577b9.a1e438"
-            ]
-        ]
-    },
-    {
-        "id": "e001a28.555566",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get global",
-        "func": "msg.payload={\n    \n        \"generic_nb_step\":global.get(\"generic_nb_step\"),\n        \"generic_flowrate\":global.get(\"generic_flowrate\"),\n        \"generic_manual_volume\":global.get(\"generic_manual_volume\"),\n        \"generic_sleep_before\":global.get(\"generic_sleep_before\"),\n        \"generic_volume_before\":global.get(\"generic_volume_before\"),\n        \"generic_path\":global.get(\"generic_path\"),\n        \"generic_nb_frame\":global.get(\"generic_nb_frame\"),\n        \"generic_sleep_during\":global.get(\"generic_sleep_during\"),\n        \n        \"sample_project\":global.get(\"sample_project\"),\n        \"sample_id\":global.get(\"sample_id\"),\n        \"sample_ship\":global.get(\"sample_ship\"),\n        \"sample_operator\":global.get(\"sample_operator\"),\n        \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n        \n        \"acq_id\":global.get(\"acq_id\"),\n        \"acq_instrument\":global.get(\"acq_instrument\"),\n        //\"acq_instrument_id\":global.get(\"acq_instrument_id\"),\n        \"acq_celltype\":global.get(\"acq_celltype\"),\n        \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n        \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n        \"acq_min_esd\":global.get(\"acq_min_esd\"),\n        \"acq_max_esd\":global.get(\"acq_max_esd\"),\n        \"acq_volume\":global.get(\"acq_volume\"),\n        \"acq_magnification\":global.get(\"magnification\"),\n        \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n        \n        \"acq_camera_name\":\"Pi Camera V2.1 - 8MP\",\n        \n        \"object_date\":global.get(\"object_date\"),\n        \"object_time\":global.get(\"object_time\"),\n        \"object_lat\":global.get(\"object_lat\"),\n        \"object_lon\":global.get(\"object_lon\"),\n        \"object_depth_min\":global.get(\"object_depth_min\"),\n        \"object_depth_max\":global.get(\"object_depth_max\"),\n        \n        \"process_pixel\":global.get(\"process_pixel\"),\n        \"process_id\":global.get(\"process_id\")\n        \n};\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1880,
-        "y": 60,
-        "wires": [
-            [
-                "76a6e6bb.a08b98"
-            ]
-        ]
-    },
-    {
-        "id": "f25890f5.f2549",
-        "type": "file",
-        "z": "259c8713.b50e28",
-        "name": "",
-        "filename": "/home/pi/PlanktonScope/config.txt",
-        "appendNewline": true,
-        "createDir": true,
-        "overwriteFile": "true",
-        "encoding": "none",
-        "x": 2233,
-        "y": 60,
-        "wires": [
-            []
-        ]
-    },
-    {
-        "id": "f5c1aa13.3cfbf8",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "set optical config",
-        "func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n  case \"25\":\n    global.set(\"magnification\",0.6);\n    global.set(\"process_pixel\",1.86);\n    global.set(\"sug_min\",60);\n    global.set(\"sug_max\",670);\n    global.set(\"sug_flowrate\",3);\n    break;\n  case \"16\":\n    global.set(\"magnification\",0.94);\n    global.set(\"process_pixel\",1.19);\n    global.set(\"sug_min\",40);\n    global.set(\"sug_max\",430);\n    global.set(\"sug_flowrate\",2.4);\n    break;\n  case \"12\":\n    global.set(\"magnification\",1.20);\n    global.set(\"process_pixel\",0.94);\n    global.set(\"sug_min\",30);\n    global.set(\"sug_max\",340);\n    global.set(\"sug_flowrate\",1.25);\n    break;\n  case \"8\":\n    global.set(\"magnification\",1.78);\n    global.set(\"process_pixel\",0.63);\n    global.set(\"sug_min\",20);\n    global.set(\"sug_max\",230);\n    global.set(\"sug_flowrate\",0.42);\n    break;\n  case \"6\":\n    global.set(\"magnification\",2.36);\n    global.set(\"process_pixel\",0.48);\n    global.set(\"sug_min\",15);\n    global.set(\"sug_max\",170);\n    global.set(\"sug_flowrate\",0.32);\n    break;\n}\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1550,
-        "y": 1041,
-        "wires": [
-            [
-                "72e1e23b.a8a67c"
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-    },
-    {
-        "id": "eb9181d8.25e01",
-        "type": "ui_dropdown",
-        "z": "259c8713.b50e28",
-        "name": "acq_fnumber_objective",
-        "label": "M12 Lens*",
-        "tooltip": "",
-        "place": "Select option",
-        "group": "52159161.72187",
-        "order": 7,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "options": [
-            {
-                "label": "f 25mm 1/2\" 5MP IR",
-                "value": 25,
-                "type": "num"
-            },
-            {
-                "label": "f 16mm 1/2.5\" 5MP IR",
-                "value": 16,
-                "type": "num"
-            },
-            {
-                "label": "f 12mm 1/2.5\" 5MP IR",
-                "value": 12,
-                "type": "num"
-            },
-            {
-                "label": "f 8mm 1/2.5\" 5MP IR",
-                "value": 8,
-                "type": "num"
-            },
-            {
-                "label": "f 6mm 1/2.5\" 5MP IR",
-                "value": 6,
-                "type": "num"
-            }
-        ],
-        "payload": "",
-        "topic": "acq_fnumber_objective",
-        "x": 1326,
-        "y": 1041,
-        "wires": [
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-                "f5c1aa13.3cfbf8"
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-        "type": "ui_numeric",
-        "z": "259c8713.b50e28",
-        "name": "acq_minimum_mesh",
-        "label": "Min fraction size (μm)",
-        "tooltip": "",
-        "group": "52159161.72187",
-        "order": 8,
-        "width": 12,
-        "height": 1,
-        "wrap": false,
-        "passthru": true,
-        "topic": "acq_minimum_mesh",
-        "format": "{{value}}",
-        "min": 0,
-        "max": "300",
-        "step": "10",
-        "x": 1336,
-        "y": 841,
-        "wires": [
-            [
-                "510bd72a.b42ea8"
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-    {
-        "id": "7cea16e.c42ace8",
-        "type": "ui_numeric",
-        "z": "259c8713.b50e28",
-        "name": "acq_maximum_mesh",
-        "label": "Max fraction size (μm)",
-        "tooltip": "",
-        "group": "52159161.72187",
-        "order": 9,
-        "width": 12,
-        "height": 1,
-        "wrap": false,
-        "passthru": true,
-        "topic": "acq_maximum_mesh",
-        "format": "{{value}}",
-        "min": "200",
-        "max": "2000",
-        "step": "100",
-        "x": 1336,
-        "y": 881,
-        "wires": [
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-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "acq_id",
-        "label": "Acquisition unique ID*",
-        "tooltip": "",
-        "group": "52159161.72187",
-        "order": 1,
-        "width": 0,
-        "height": 0,
-        "passthru": true,
-        "mode": "number",
-        "delay": 300,
-        "topic": "acq_id",
-        "x": 1386,
-        "y": 721,
-        "wires": [
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-    {
-        "id": "259fd49a.160a3c",
-        "type": "ui_dropdown",
-        "z": "259c8713.b50e28",
-        "name": "acq_celltype",
-        "label": "Thickness flowcell*",
-        "tooltip": "",
-        "place": "Select option",
-        "group": "52159161.72187",
-        "order": 6,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "options": [
-            {
-                "label": "200 μm µ-Slide I Luer",
-                "value": 200,
-                "type": "num"
-            },
-            {
-                "label": "400 μm µ-Slide I Luer",
-                "value": 400,
-                "type": "num"
-            },
-            {
-                "label": "600 μm µ-Slide I Luer",
-                "value": 600,
-                "type": "num"
-            },
-            {
-                "label": "800 μm µ-Slide I Luer",
-                "value": 800,
-                "type": "num"
-            }
-        ],
-        "payload": "",
-        "topic": "acq_celltype",
-        "x": 1366,
-        "y": 801,
-        "wires": [
-            [
-                "d96d32ec.f88b9"
-            ]
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-    {
-        "id": "66a3425c.79aabc",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "acq_volume",
-        "label": "Volume to pass (ml)",
-        "tooltip": "",
-        "group": "52159161.72187",
-        "order": 5,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "number",
-        "delay": 300,
-        "topic": "acq_volume",
-        "x": 1366,
-        "y": 921,
-        "wires": [
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-            ]
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-    },
-    {
-        "id": "6722bc48.d4f354",
-        "type": "comment",
-        "z": "259c8713.b50e28",
-        "name": "sample",
-        "info": "SAMPLE: a collection event\n\n    sample_id [t] : unique identifier\n    sample_*** [f] or [t] : other fields relative to the sample\n",
-        "x": 810,
-        "y": 60,
-        "wires": []
-    },
-    {
-        "id": "f93037f1.6a6238",
-        "type": "comment",
-        "z": "259c8713.b50e28",
-        "name": "acquisition",
-        "info": "ACQUISITION: metadata relative to the image acquisition\n\n    acq_id [t] : unique identifier. If your acquisition differ for each sample you must have different identifier.\n    acq_instrument [t] : name of the instrument (UVP, ZOOSCAN, FLOWCAM, etc.)\n    acq_*** [f] or [t] : other fields relative to the acquisition\n",
-        "x": 800,
-        "y": 720,
-        "wires": []
-    },
-    {
-        "id": "734ba3db.3f82fc",
-        "type": "comment",
-        "z": "259c8713.b50e28",
-        "name": "object",
-        "info": "OBJECT: one object to be classified, usually one organism. One object can be represented by several images. In this tsv file, there is one line per image which means the object data gets repeated on several lines.\n\n    object_id [t] : unique object name (will be displayed in Ecotaxa object page)\n    object_link [f] : URL of an associated website\n    object_lat [f] : latitude, decimal degrees\n    object_lon [f] : longitude, decimal degrees\n    object_date [f] : ISO8601 YYYYMMJJ UTC\n    object_time [f] : ISO8601 HHMMSS UTC\n    object_depth_min [f] : minimum depth of object, meters\n    object_depth_max [f] : maximum depth of object, meters\n\nAnd, for already classified objects\n\n    object_annotation_date [t] : ISO8601 YYYYMMJJ UTC\n    object_annotation_time [t] : ISO8601 YYYYMMJJ UTC\n    object_annotation_category [t] : class of the object with optionnaly its direct parent following separated by left angle bracket without whitespace \"Cnidaria<Hydrozoa\" or old style between brackets \"Cnidaria (Hydrozoa)\"\n    object_annotation_category_id [f] : Ecotaxa ID of the class of the object, generaly from an Ecotaxa export\n    object_annotation_person_name [t] : name of the person who identified the object\n    object_annotation_person_email [t] : email of the person who identified the object\n    object_annotation_status [t] : predicted, dubious, or validated\n",
-        "x": 810,
-        "y": 1140,
-        "wires": []
-    },
-    {
-        "id": "5866c9a4.e1ca88",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "acq_instrument",
-        "label": "Acquisition instrument",
-        "tooltip": "PlanktonScope V2.1",
-        "group": "52159161.72187",
-        "order": 4,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "text",
-        "delay": 300,
-        "topic": "acq_instrument",
-        "x": 1356,
-        "y": 761,
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-        "type": "json",
-        "z": "259c8713.b50e28",
-        "name": "",
-        "property": "payload",
-        "action": "str",
-        "pretty": true,
-        "x": 2023,
-        "y": 60,
-        "wires": [
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-        "type": "file in",
-        "z": "259c8713.b50e28",
-        "name": "",
-        "filename": "/home/pi/PlanktonScope/config.txt",
-        "format": "utf8",
-        "chunk": false,
-        "sendError": false,
-        "encoding": "none",
-        "x": 320,
-        "y": 60,
-        "wires": [
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-        "type": "inject",
-        "z": "259c8713.b50e28",
-        "name": "on_load",
-        "topic": "",
-        "payload": "",
-        "payloadType": "date",
-        "repeat": "",
-        "crontab": "",
-        "once": true,
-        "onceDelay": 0.1,
-        "x": 100,
-        "y": 60,
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-                "ca38a11d.0ee54"
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-        "type": "json",
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-        "property": "payload",
-        "action": "",
-        "pretty": false,
-        "x": 550,
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-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get sample_projet",
-        "func": "msg.payload = msg.payload.sample_project;\nreturn msg;",
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-        "name": "",
-        "links": [
-            "7532db82.1dcf04"
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-        "x": 1475,
-        "y": 220,
-        "wires": []
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-    {
-        "id": "767b43a1.de21dc",
-        "type": "ui_worldmap",
-        "z": "259c8713.b50e28",
-        "d": true,
-        "group": "cef1e703.bcf3c8",
-        "order": 1,
-        "width": 0,
-        "height": 0,
-        "name": "",
-        "lat": "1.5",
-        "lon": "1.5",
-        "zoom": "4",
-        "layer": "OSM grey",
-        "cluster": "1",
-        "maxage": "",
-        "usermenu": "hide",
-        "layers": "hide",
-        "panit": "false",
-        "panlock": "false",
-        "zoomlock": "false",
-        "hiderightclick": "true",
-        "coords": "deg",
-        "showgrid": "false",
-        "path": "/worldmap",
-        "x": 1380,
-        "y": 1221,
-        "wires": []
-    },
-    {
-        "id": "2327c165.8397ae",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get object_lat & object_lon",
-        "func": "\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1060,
-        "y": 1221,
-        "wires": [
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-        "id": "fa47061e.34a218",
-        "type": "ui_numeric",
-        "z": "259c8713.b50e28",
-        "name": "acq_min_esd",
-        "label": "Minimum size to segment (μm)",
-        "tooltip": "",
-        "group": "52159161.72187",
-        "order": 10,
-        "width": 12,
-        "height": 1,
-        "wrap": false,
-        "passthru": true,
-        "topic": "acq_min_esd",
-        "format": "{{value}}",
-        "min": 0,
-        "max": "300",
-        "step": "5",
-        "x": 1366,
-        "y": 961,
-        "wires": [
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-        "type": "ui_numeric",
-        "z": "259c8713.b50e28",
-        "name": "acq_max_esd",
-        "label": "Maximum size to segment (μm)",
-        "tooltip": "",
-        "group": "52159161.72187",
-        "order": 11,
-        "width": 12,
-        "height": 1,
-        "wrap": false,
-        "passthru": true,
-        "topic": "acq_max_esd",
-        "format": "{{value}}",
-        "min": "100",
-        "max": "2000",
-        "step": "5",
-        "x": 1356,
-        "y": 1001,
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-        "z": "259c8713.b50e28",
-        "name": "get acq_min_esd",
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-        "x": 1030,
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-        "name": "nb_step",
-        "label": "Number of step(s)",
-        "tooltip": "",
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-        "order": 3,
-        "width": 8,
-        "height": 1,
-        "passthru": true,
-        "mode": "number",
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-        "z": "259c8713.b50e28",
-        "name": "Focus settings",
-        "info": "ACQUISITION: metadata relative to the image acquisition\n\n    acq_id [t] : unique identifier. If your acquisition differ for each sample you must have different identifier.\n    acq_instrument [t] : name of the instrument (UVP, ZOOSCAN, FLOWCAM, etc.)\n    acq_*** [f] or [t] : other fields relative to the acquisition\n",
-        "x": 790,
-        "y": 300,
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-        "type": "link out",
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-        "x": 1475,
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-        "wires": []
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-    {
-        "id": "81a7627c.bac92",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic_nb_step",
-        "func": "msg.payload = msg.payload.generic_nb_step;\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1040,
-        "y": 341,
-        "wires": [
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-        "id": "705dddc5.567bc4",
-        "type": "ui_button",
-        "z": "259c8713.b50e28",
-        "name": "DOWN",
-        "group": "fbd92986.1028c8",
-        "order": 4,
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-        "height": 1,
-        "passthru": true,
-        "label": "",
-        "tooltip": "",
-        "color": "",
-        "bgcolor": "",
-        "icon": "arrow_downward",
-        "payload": "DOWN",
-        "payloadType": "str",
-        "topic": "actuator/focus",
-        "x": 1380,
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-        "z": "259c8713.b50e28",
-        "name": "UP",
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-        "height": 1,
-        "passthru": false,
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-        "color": "",
-        "bgcolor": "",
-        "icon": "arrow_upwards",
-        "payload": "UP",
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-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "manual_volume",
-        "label": "Volume to pass (ml)",
-        "tooltip": "",
-        "group": "707d9797.c8e798",
-        "order": 3,
-        "width": 8,
-        "height": 1,
-        "passthru": true,
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-        "topic": "manual_volume",
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-        "id": "3e9c4e74.aee022",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "pump.js",
-        "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar manual_volume= global.get(\"manual_volume\");\nvar flowrate= global.get(\"flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Volume to pass\";\n    \n}else if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Flowrate\";\n    \n}else {\n    volume = global.get(\"manual_volume\");\n    nb_step=volume*507\n    msg.volume = volume;\n    flowrate = global.get(\"flowrate\");\n    duration=(volume*60)/flowrate\n    delay=(duration/nb_step)-0.005\n    msg.topic = \"actuator/pump\";\n    \n    if(msg.payload === \"FORWARD\" & state===\"free\"){\n        msg.payload='FORWARD '+delay+' '+nb_step;\n    }\n    if(msg.payload === \"BACKWARD\" & state===\"free\"){\n        msg.payload='BACKWARD '+delay+' '+nb_step;\n    }\n}\nreturn msg;",
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-        "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n    python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
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-        "type": "ui_button",
-        "z": "259c8713.b50e28",
-        "name": "BACKWARD",
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-        "order": 2,
-        "width": 6,
-        "height": 1,
-        "passthru": false,
-        "label": "",
-        "tooltip": "",
-        "color": "",
-        "bgcolor": "",
-        "icon": "arrow_back",
-        "payload": "BACKWARD",
-        "payloadType": "str",
-        "topic": "actuator/pump",
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-        "name": "FORWARD",
-        "group": "707d9797.c8e798",
-        "order": 4,
-        "width": 6,
-        "height": 1,
-        "passthru": true,
-        "label": "",
-        "tooltip": "",
-        "color": "",
-        "bgcolor": "",
-        "icon": "arrow_forward",
-        "payload": "FORWARD",
-        "payloadType": "str",
-        "topic": "actuator/pump",
-        "x": 1370,
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-    {
-        "id": "31931ba8.ab01d4",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic_manual_volume",
-        "func": "msg.payload = msg.payload.generic_manual_volume;\nreturn msg;",
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-        "id": "1d58e86f.a3a9e8",
-        "type": "rpi-gpio out",
-        "z": "259c8713.b50e28",
-        "name": "",
-        "pin": "40",
-        "set": "",
-        "level": "0",
-        "freq": "",
-        "out": "out",
-        "x": 420,
-        "y": 161,
-        "wires": []
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-        "id": "3e58f066.366b5",
-        "type": "ui_template",
-        "z": "259c8713.b50e28",
-        "group": "fbd92986.1028c8",
-        "name": "Stream Pi Camera",
-        "order": 1,
-        "width": 24,
-        "height": 11,
-        "format": "<center><iframe id=\"inlineFrameExample\"\n    title=\"Inline Frame Example\"\n    height=\"600\"\n    width=\"800\"\n    frameborder=\"0\"\n    src=\"http://localhost/html/min.php\">\n</iframe></center>",
-        "storeOutMessages": true,
-        "fwdInMessages": true,
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-        "property": "topic",
-        "propertyType": "msg",
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-                "v": "actuator/focus",
-                "vt": "str"
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-        "checkall": "true",
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-        "name": "init LED",
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-        "type": "exec",
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-        "command": "vcgencmd measure_temp | tr -d \"temp=\" | tr -d \"'C\" | tr -d \"\\n\"",
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-        "useSpawn": "",
-        "timer": "",
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-        "x": 1475,
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-        "id": "1e75fd6c.234753",
-        "type": "ui_slider",
-        "z": "259c8713.b50e28",
-        "name": "flowrate",
-        "label": "Flowrate (ml/min)*",
-        "tooltip": "",
-        "group": "707d9797.c8e798",
-        "order": 1,
-        "width": 0,
-        "height": 0,
-        "passthru": true,
-        "outs": "end",
-        "topic": "flowrate",
-        "min": 0,
-        "max": "20",
-        "step": "0.1",
-        "x": 1380,
-        "y": 501,
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-    {
-        "id": "3345fc41.8341b4",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic.flowrate",
-        "func": "msg.payload = msg.payload.generic_flowrate;\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1030,
-        "y": 501,
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-        "type": "link in",
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-        "y": 1440,
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-        "id": "62fea790.2840a8",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "generic_path",
-        "label": "DIrectory to store the images",
-        "tooltip": "",
-        "group": "8cfadfab.327d7",
-        "order": 3,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "text",
-        "delay": 300,
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-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "generic_volume_before",
-        "label": "Volume to pass before to begin",
-        "tooltip": "",
-        "group": "8cfadfab.327d7",
-        "order": 5,
-        "width": 12,
-        "height": 1,
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-        "y": 1400,
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-        "id": "26549e4b.5dbf72",
-        "type": "ui_text_input",
-        "z": "259c8713.b50e28",
-        "name": "generic_nb_frame",
-        "label": "Number of frame per acquisition",
-        "tooltip": "",
-        "group": "8cfadfab.327d7",
-        "order": 4,
-        "width": 12,
-        "height": 1,
-        "passthru": true,
-        "mode": "number",
-        "delay": 300,
-        "topic": "generic_nb_frame",
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-    {
-        "id": "d5df5489.6523e8",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic_sleep_before",
-        "func": "msg.payload = msg.payload.generic_sleep_before;\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1050,
-        "y": 1360,
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-        "id": "9b2fe59b.be48c8",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic_volume_before",
-        "func": "msg.payload = msg.payload.generic_volume_before;\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1060,
-        "y": 1400,
-        "wires": [
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-        "id": "54dfe4df.c6837c",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic_path",
-        "func": "msg.payload = msg.payload.generic_path;\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1030,
-        "y": 1440,
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-        "id": "1aa409a4.7b3866",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic_nb_frame",
-        "func": "msg.payload = msg.payload.generic_nb_frame;\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1040,
-        "y": 1480,
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-    {
-        "id": "ce6ded0a.8ee37",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "get generic_sleep_during",
-        "func": "msg.payload = msg.payload.generic_sleep_during;\nreturn msg;",
-        "outputs": 1,
-        "noerr": 0,
-        "x": 1050,
-        "y": 1520,
-        "wires": [
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-        "id": "3fa20f41.11e61",
-        "type": "link in",
-        "z": "259c8713.b50e28",
-        "name": "",
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-        "x": 895,
-        "y": 1520,
-        "wires": [
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-        "id": "5218ba30.bbe844",
-        "type": "function",
-        "z": "259c8713.b50e28",
-        "name": "image.js",
-        "func": "state = global.get(\"state\");\nglobal.set('img_counter',0)\nglobal.set('obj_counter',0)\nif (state == null){state=\"free\"}\n\nvar generic_sleep_before= global.get(\"generic_sleep_before\");\nvar generic_volume_before= global.get(\"generic_volume_before\");\nvar generic_path= global.get(\"generic_path\");\nvar generic_nb_frame= global.get(\"generic_nb_frame\");\nvar generic_sleep_during= global.get(\"generic_sleep_during\");\n\nif (generic_sleep_before === undefined || generic_sleep_before === \"\" || generic_sleep_before === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Duration before start the acquisition\";\n    \n}else if (generic_volume_before === undefined || generic_volume_before === \"\" || generic_volume_before === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Volume before acquisition\";\n    \n}else if (generic_path === undefined || generic_path === \"\" || generic_path === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Directory to store the images\";\n    \n}else if (generic_nb_frame === undefined || generic_nb_frame === \"\" || generic_nb_frame === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Number of frames per acquisition\";\n    \n}else if (generic_sleep_during === undefined || generic_sleep_during === \"\" || generic_sleep_during === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Duration in between each acquisition\";\n    \n}else {\n    generic_nb_step = 507*generic_volume_before\n    generic_nb_frame=generic_nb_frame-1\n    msg.payload=generic_sleep_before+' '+generic_nb_step+' '+generic_path+' '+generic_nb_frame+' '+generic_sleep_during;\n}\nreturn msg;",
-        "outputs": 1,
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-        "x": 1520,
-        "y": 1560,
-        "wires": [
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-        "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n    python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
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-        "ok": "OK",
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-        "type": "mqtt out",
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-        "topic": "",
-        "qos": "",
-        "retain": "",
-        "broker": "cb2f36fe.1c7038",
-        "x": 1810,
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-        "id": "ca843dd8.d1c62",
-        "type": "exec",
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-        "command": "python3.7 /home/pi/PlanktonScope/script/mqtt_pump_focus_image.py",
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-                "t": "eq",
-                "v": "Interrompted",
-                "vt": "str"
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-                "t": "cont",
-                "v": "jpg",
-                "vt": "str"
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-        "removeOlderUnit": "3600",
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If your acquisition differ for each sample you must have different identifier.\n    acq_instrument [t] : name of the instrument (UVP, ZOOSCAN, FLOWCAM, etc.)\n    acq_*** [f] or [t] : other fields relative to the acquisition\n","x":800,"y":720,"wires":[]},{"id":"734ba3db.3f82fc","type":"comment","z":"259c8713.b50e28","name":"object","info":"OBJECT: one object to be classified, usually one organism. One object can be represented by several images. In this tsv file, there is one line per image which means the object data gets repeated on several lines.\n\n    object_id [t] : unique object name (will be displayed in Ecotaxa object page)\n    object_link [f] : URL of an associated website\n    object_lat [f] : latitude, decimal degrees\n    object_lon [f] : longitude, decimal degrees\n    object_date [f] : ISO8601 YYYYMMJJ UTC\n    object_time [f] : ISO8601 HHMMSS UTC\n    object_depth_min [f] : minimum depth of object, meters\n    object_depth_max [f] : maximum depth of object, meters\n\nAnd, for already classified objects\n\n    object_annotation_date [t] : ISO8601 YYYYMMJJ UTC\n    object_annotation_time [t] : ISO8601 YYYYMMJJ UTC\n    object_annotation_category [t] : class of the object with optionnaly its direct parent following separated by left angle bracket without whitespace \"Cnidaria<Hydrozoa\" or old style between brackets \"Cnidaria (Hydrozoa)\"\n    object_annotation_category_id [f] : Ecotaxa ID of the class of the object, generaly from an Ecotaxa export\n    object_annotation_person_name [t] : name of the person who identified the object\n    object_annotation_person_email [t] : email of the person who identified the object\n    object_annotation_status [t] : predicted, dubious, or validated\n","x":810,"y":1140,"wires":[]},{"id":"5866c9a4.e1ca88","type":"ui_text_input","z":"259c8713.b50e28","name":"acq_instrument","label":"Acquisition instrument","tooltip":"PlanktonScope V2.1","group":"52159161.72187","order":4,"width":12,"height":1,"passthru":true,"mode":"text","delay":300,"topic":"acq_instrument","x":1356,"y":761,"wires":[["1d641ab3.6ad485"]]},{"id":"76a6e6bb.a08b98","type":"json","z":"259c8713.b50e28","name":"","property":"payload","action":"str","pretty":true,"x":2023,"y":60,"wires":[["f25890f5.f2549"]]},{"id":"594ec843.9d4458","type":"file 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msg;","outputs":1,"noerr":0,"x":1740,"y":60,"wires":[["e001a28.555566"]]},{"id":"21f41837.bb6c88","type":"function","z":"259c8713.b50e28","name":"get object_depth_min","func":"msg.payload = msg.payload.object_depth_min;\nreturn msg;","outputs":1,"noerr":0,"x":1044,"y":1263,"wires":[["47c7db4d.5eb014"]]},{"id":"c2f235f2.eee388","type":"function","z":"259c8713.b50e28","name":"get object_depth_max","func":"msg.payload = msg.payload.object_depth_max;\nreturn msg;","outputs":1,"noerr":0,"x":1044,"y":1303,"wires":[["20c46fd4.6b984"]]},{"id":"23e45d82.a01f82","type":"ui_text_input","z":"259c8713.b50e28","name":"process_id","label":"Id of the process","tooltip":"","group":"8cfadfab.327d7","order":6,"width":12,"height":1,"passthru":true,"mode":"number","delay":300,"topic":"process_id","x":1370,"y":1620,"wires":[["de5e82b3.a0c12"]]},{"id":"dba24475.8d16b8","type":"comment","z":"259c8713.b50e28","name":"process","info":"PROCESS: metadata relative to the processing of the raw images\n\n    process_id [t] : unique identifier. If your processing differ for each sample you must have different identifier.\n    process_*** [f] or [t] : other fields relative to the process\n","x":810,"y":1620,"wires":[]},{"id":"d899c841.e6c178","type":"function","z":"259c8713.b50e28","name":"get process_id","func":"msg.payload = msg.payload.process_id+1;\nreturn msg;","outputs":1,"noerr":0,"x":1020,"y":1620,"wires":[["23e45d82.a01f82"]]},{"id":"e8f2ae05.2961c","type":"link in","z":"259c8713.b50e28","name":"","links":["b368cae7.dd66b8"],"x":895,"y":60,"wires":[["2582798f.eddcc6"]]},{"id":"b368cae7.dd66b8","type":"link 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out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":100,"wires":[]},{"id":"a2ae6c99.188f2","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":180,"wires":[]},{"id":"3c6a723.145778e","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":220,"wires":[]},{"id":"767b43a1.de21dc","type":"ui_worldmap","z":"259c8713.b50e28","d":true,"group":"cef1e703.bcf3c8","order":1,"width":0,"height":0,"name":"","lat":"1.5","lon":"1.5","zoom":"4","layer":"OSM grey","cluster":"1","maxage":"","usermenu":"hide","layers":"hide","panit":"false","panlock":"false","zoomlock":"false","hiderightclick":"true","coords":"deg","showgrid":"false","path":"/worldmap","x":1380,"y":1221,"wires":[]},{"id":"2327c165.8397ae","type":"function","z":"259c8713.b50e28","name":"get object_lat & object_lon","func":"\nreturn msg;","outputs":1,"noerr":0,"x":1060,"y":1221,"wires":[["767b43a1.de21dc"]]},{"id":"fa47061e.34a218","type":"ui_numeric","z":"259c8713.b50e28","name":"acq_min_esd","label":"Minimum size to segment (μm)","tooltip":"","group":"52159161.72187","order":10,"width":12,"height":1,"wrap":false,"passthru":true,"topic":"acq_min_esd","format":"{{value}}","min":0,"max":"300","step":"5","x":1366,"y":961,"wires":[["2c95d05e.4668b"]]},{"id":"6f36bd6d.154d14","type":"ui_numeric","z":"259c8713.b50e28","name":"acq_max_esd","label":"Maximum size to segment (μm)","tooltip":"","group":"52159161.72187","order":11,"width":12,"height":1,"wrap":false,"passthru":true,"topic":"acq_max_esd","format":"{{value}}","min":"100","max":"2000","step":"5","x":1356,"y":1001,"wires":[["8c499d09.7a2a"]]},{"id":"277b6764.edb1f8","type":"function","z":"259c8713.b50e28","name":"get acq_min_esd","func":"msg.payload = msg.payload.acq_min_esd;\nreturn msg;","outputs":1,"noerr":0,"x":1030,"y":961,"wires":[["fa47061e.34a218"]]},{"id":"75b10c7c.8433a4","type":"function","z":"259c8713.b50e28","name":"get acq_max_esd","func":"msg.payload = msg.payload.acq_max_esd;\nreturn msg;","outputs":1,"noerr":0,"x":1030,"y":1001,"wires":[["6f36bd6d.154d14"]]},{"id":"2673deea.4cc532","type":"link in","z":"259c8713.b50e28","name":"","links":["b368cae7.dd66b8"],"x":895,"y":961,"wires":[["277b6764.edb1f8"]]},{"id":"245f70f0.16b7b","type":"link in","z":"259c8713.b50e28","name":"","links":["b368cae7.dd66b8"],"x":895,"y":1001,"wires":[["75b10c7c.8433a4"]]},{"id":"2c95d05e.4668b","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":961,"wires":[]},{"id":"8c499d09.7a2a","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":1001,"wires":[]},{"id":"5f4a72d1.9f6adc","type":"ui_text_input","z":"259c8713.b50e28","name":"nb_step","label":"Number of step(s)","tooltip":"","group":"fbd92986.1028c8","order":3,"width":8,"height":1,"passthru":true,"mode":"number","delay":300,"topic":"nb_step","x":1380,"y":341,"wires":[["299221dd.e8f85e"]]},{"id":"89474615.765a38","type":"comment","z":"259c8713.b50e28","name":"Focus settings","info":"ACQUISITION: metadata relative to the image acquisition\n\n    acq_id [t] : unique identifier. If your acquisition differ for each sample you must have different identifier.\n    acq_instrument [t] : name of the instrument (UVP, ZOOSCAN, FLOWCAM, etc.)\n    acq_*** [f] or [t] : other fields relative to the acquisition\n","x":790,"y":300,"wires":[]},{"id":"299221dd.e8f85e","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":341,"wires":[]},{"id":"81a7627c.bac92","type":"function","z":"259c8713.b50e28","name":"get generic_nb_step","func":"msg.payload = msg.payload.generic_nb_step;\nreturn msg;","outputs":1,"noerr":0,"x":1040,"y":341,"wires":[["5f4a72d1.9f6adc"]]},{"id":"d949ef9d.b1fa4","type":"link in","z":"259c8713.b50e28","name":"","links":["b368cae7.dd66b8"],"x":895,"y":341,"wires":[["81a7627c.bac92"]]},{"id":"705dddc5.567bc4","type":"ui_button","z":"259c8713.b50e28","name":"DOWN","group":"fbd92986.1028c8","order":4,"width":6,"height":1,"passthru":true,"label":"","tooltip":"","color":"","bgcolor":"","icon":"arrow_downward","payload":"DOWN","payloadType":"str","topic":"actuator/focus","x":1380,"y":420,"wires":[["4f74f017.00a58"]]},{"id":"b0aacff7.56651","type":"ui_button","z":"259c8713.b50e28","name":"UP","group":"fbd92986.1028c8","order":2,"width":6,"height":1,"passthru":false,"label":"","tooltip":"","color":"","bgcolor":"","icon":"arrow_upwards","payload":"UP","payloadType":"str","topic":"actuator/focus","x":1390,"y":381,"wires":[["4f74f017.00a58"]]},{"id":"1b9f457d.9be43b","type":"ui_text_input","z":"259c8713.b50e28","name":"manual_volume","label":"Volume to pass (ml)","tooltip":"","group":"707d9797.c8e798","order":3,"width":8,"height":1,"passthru":true,"mode":"number","delay":300,"topic":"manual_volume","x":1360,"y":541,"wires":[["b2660124.01b81"]]},{"id":"b2660124.01b81","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":541,"wires":[]},{"id":"3e9c4e74.aee022","type":"function","z":"259c8713.b50e28","name":"pump.js","func":"state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar manual_volume= global.get(\"manual_volume\");\nvar flowrate= global.get(\"flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Volume to pass\";\n    \n}else if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Flowrate\";\n    \n}else {\n    volume = global.get(\"manual_volume\");\n    nb_step=volume*507\n    msg.volume = volume;\n    flowrate = global.get(\"flowrate\");\n    duration=(volume*60)/flowrate\n    delay=(duration/nb_step)-0.005\n    msg.topic = \"actuator/pump\";\n    \n    if(msg.payload === \"FORWARD\" & state===\"free\"){\n        msg.payload='FORWARD '+delay+' '+nb_step;\n    }\n    if(msg.payload === \"BACKWARD\" & state===\"free\"){\n        msg.payload='BACKWARD '+delay+' '+nb_step;\n    }\n}\nreturn msg;","outputs":1,"noerr":0,"x":1520,"y":600,"wires":[["98e2e9e0.fb7418"]],"info":"### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n    python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"},{"id":"3f0df968.b0d286","type":"ui_button","z":"259c8713.b50e28","name":"BACKWARD","group":"707d9797.c8e798","order":2,"width":6,"height":1,"passthru":false,"label":"","tooltip":"","color":"","bgcolor":"","icon":"arrow_back","payload":"BACKWARD","payloadType":"str","topic":"actuator/pump","x":1370,"y":580,"wires":[["3e9c4e74.aee022"]]},{"id":"214fb242.9abb6e","type":"ui_button","z":"259c8713.b50e28","name":"FORWARD","group":"707d9797.c8e798","order":4,"width":6,"height":1,"passthru":true,"label":"","tooltip":"","color":"","bgcolor":"","icon":"arrow_forward","payload":"FORWARD","payloadType":"str","topic":"actuator/pump","x":1370,"y":620,"wires":[["3e9c4e74.aee022"]]},{"id":"7c38cc6e.c932e4","type":"link in","z":"259c8713.b50e28","name":"","links":["b368cae7.dd66b8"],"x":895,"y":541,"wires":[["31931ba8.ab01d4"]]},{"id":"31931ba8.ab01d4","type":"function","z":"259c8713.b50e28","name":"get generic_manual_volume","func":"msg.payload = msg.payload.generic_manual_volume;\nreturn msg;","outputs":1,"noerr":0,"x":1060,"y":541,"wires":[["1b9f457d.9be43b"]]},{"id":"1d58e86f.a3a9e8","type":"rpi-gpio out","z":"259c8713.b50e28","name":"","pin":"40","set":"","level":"0","freq":"","out":"out","x":420,"y":161,"wires":[]},{"id":"3e58f066.366b5","type":"ui_template","z":"259c8713.b50e28","group":"fbd92986.1028c8","name":"Stream Pi Camera","order":1,"width":24,"height":11,"format":"<center><iframe id=\"inlineFrameExample\"\n    title=\"Inline Frame Example\"\n    height=\"600\"\n    width=\"800\"\n    frameborder=\"0\"\n    src=\"http://192.168.4.1:8000/index.html\">\n</iframe></center>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":1210,"y":300,"wires":[[]]},{"id":"b7d9455c.026588","type":"switch","z":"259c8713.b50e28","name":"","property":"topic","propertyType":"msg","rules":[{"t":"eq","v":"actuator/focus","vt":"str"},{"t":"eq","v":"Missing entry :","vt":"str"}],"checkall":"true","repair":false,"outputs":2,"x":1670,"y":400,"wires":[["fdb3b132.8b341"],["b9d996d6.37c2f8"]]},{"id":"b9d996d6.37c2f8","type":"ui_toast","z":"259c8713.b50e28","position":"dialog","displayTime":"3","highlight":"","sendall":true,"outputs":1,"ok":"OK","cancel":"","raw":false,"topic":"","name":"","x":1830,"y":420,"wires":[[]]},{"id":"ca38a11d.0ee54","type":"function","z":"259c8713.b50e28","name":"init LED","func":"msg.payload=1;\nreturn msg;","outputs":1,"noerr":0,"x":240,"y":161,"wires":[["1d58e86f.a3a9e8"]]},{"id":"75701b99.c6e974","type":"exec","z":"259c8713.b50e28","command":"vcgencmd measure_temp | tr -d \"temp=\" | tr -d \"'C\" | tr -d \"\\n\"","addpay":false,"append":"","useSpawn":"","timer":"","name":"RPi Temp.","x":2750,"y":180,"wires":[["aac61390.c13c6"],[],[]]},{"id":"1780384d.718198","type":"inject","z":"259c8713.b50e28","name":"","topic":"","payload":"","payloadType":"date","repeat":"10","crontab":"","once":false,"onceDelay":"","x":2590,"y":180,"wires":[["75701b99.c6e974"]]},{"id":"aac61390.c13c6","type":"python3-function","z":"259c8713.b50e28","name":"fan.py","func":"#!/usr/bin/python\nimport smbus\nimport sys\n\ntemp = msg[\"payload\"]\n\ntemp = int(temp.split('.',1)[0])\n\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n\nif temp < 38:\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\nif temp > 42:\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)","outputs":1,"x":2930,"y":180,"wires":[[]]},{"id":"603d5fab.08f56","type":"comment","z":"259c8713.b50e28","name":"save config.txt","info":"","x":1690,"y":20,"wires":[]},{"id":"72e1e23b.a8a67c","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04","d473399b.081ae8"],"x":1675,"y":1040,"wires":[]},{"id":"d473399b.081ae8","type":"link in","z":"259c8713.b50e28","name":"","links":["72e1e23b.a8a67c","c93577b9.a1e438","829cc940.327648"],"x":1635,"y":100,"wires":[["e001a28.555566"]]},{"id":"c93577b9.a1e438","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04","d473399b.081ae8"],"x":1675,"y":1140,"wires":[]},{"id":"829cc940.327648","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04","d473399b.081ae8"],"x":1675,"y":1180,"wires":[]},{"id":"98e2e9e0.fb7418","type":"switch","z":"259c8713.b50e28","name":"","property":"topic","propertyType":"msg","rules":[{"t":"eq","v":"actuator/pump","vt":"str"},{"t":"eq","v":"Missing entry :","vt":"str"}],"checkall":"true","repair":false,"outputs":2,"x":1670,"y":600,"wires":[["61fb057d.3c251c"],["46a536f0.c83138"]]},{"id":"46a536f0.c83138","type":"ui_toast","z":"259c8713.b50e28","position":"dialog","displayTime":"3","highlight":"","sendall":true,"outputs":1,"ok":"OK","cancel":"","raw":false,"topic":"","name":"","x":1830,"y":620,"wires":[[]]},{"id":"24ffcf03.2a51b","type":"ui_button","z":"259c8713.b50e28","name":"stop pump","group":"707d9797.c8e798","order":5,"width":4,"height":1,"passthru":true,"label":"STOP PUMP","tooltip":"","color":"","bgcolor":"#AD1625","icon":"","payload":"off","payloadType":"str","topic":"actuator/wait","x":1370,"y":660,"wires":[["e2a7220a.09d43"]]},{"id":"7eb16c3b.294e54","type":"comment","z":"259c8713.b50e28","name":"turn ON the LED","info":"","x":260,"y":121,"wires":[]},{"id":"4f74f017.00a58","type":"function","z":"259c8713.b50e28","name":"focus.js","func":"state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar nb_step= global.get(\"nb_step\");\n\nif (nb_step === undefined || nb_step === \"\" || nb_step === null) {\n    msg.topic = \"Missing entry :\"\n    msg.payload = \"Number of steps\";\n    \n}else {\n    nb_step= global.get(\"nb_step\");\n    if(msg.payload === \"UP\" & state===\"free\"){\n        msg.payload=\"FORWARD \"+nb_step;\n    }\n    if(msg.payload === \"DOWN\" & state===\"free\"){\n        msg.payload=\"BACKWARD \"+nb_step;\n    }\n}\nreturn msg;","outputs":1,"noerr":0,"x":1520,"y":400,"wires":[["b7d9455c.026588"]],"info":"### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n    python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"},{"id":"52cc1de5.b78e84","type":"ui_button","z":"259c8713.b50e28","name":"stop focus","group":"fbd92986.1028c8","order":5,"width":4,"height":1,"passthru":true,"label":"STOP FOCUS","tooltip":"","color":"","bgcolor":"#AD1625","icon":"","payload":"off","payloadType":"str","topic":"actuator/wait","x":1370,"y":460,"wires":[["e46763fe.7fc83"]]},{"id":"39cad6fb.1503ca","type":"ui_button","z":"259c8713.b50e28","name":"","group":"c6a276ac.3eb74","order":1,"width":12,"height":1,"passthru":false,"label":"Reboot","tooltip":"","color":"","bgcolor":"#AD1625","icon":"","payload":"off","payloadType":"str","topic":"reboot","x":2620,"y":60,"wires":[["95b876d4.07c708","99d61fbe.b244b"]]},{"id":"1f53f29b.feee4d","type":"exec","z":"259c8713.b50e28","command":"sudo","addpay":true,"append":"","useSpawn":"false","timer":"2","oldrc":false,"name":"cmd","x":2930,"y":60,"wires":[[],[],[]]},{"id":"e325458b.95bff8","type":"ui_button","z":"259c8713.b50e28","name":"","group":"c6a276ac.3eb74","order":2,"width":12,"height":1,"passthru":false,"label":"Shutdown","tooltip":"","color":"","bgcolor":"#AD1625","icon":"","payload":"off","payloadType":"str","topic":"shutdown","x":2620,"y":120,"wires":[["95b876d4.07c708","99d61fbe.b244b"]]},{"id":"95b876d4.07c708","type":"python3-function","z":"259c8713.b50e28","name":"action","func":"#!/usr/bin/python\nimport smbus\nimport time\nbus = smbus.SMBus(1)\ntime.sleep(1)\n#turn off fan RGB\nbus.write_byte_data(0x0d, 0x07, 0x00)\nbus.write_byte_data(0x0d, 0x07, 0x00)\n\nmsg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg","outputs":1,"x":2790,"y":80,"wires":[["d348474b.d756a8","1f53f29b.feee4d"]]},{"id":"d348474b.d756a8","type":"exec","z":"259c8713.b50e28","command":"i2cdetect -y 1","addpay":false,"append":"","useSpawn":"false","timer":"1","oldrc":false,"name":"i2c update","x":2950,"y":120,"wires":[[],[],[]]},{"id":"99d61fbe.b244b","type":"link out","z":"259c8713.b50e28","name":"","links":["3517d063.27073"],"x":2735,"y":20,"wires":[]},{"id":"cdd1b550.da18e8","type":"mqtt in","z":"259c8713.b50e28","name":"","topic":"receiver/#","qos":"0","datatype":"auto","broker":"b77ffa1b.942258","x":720,"y":2000,"wires":[["6920281d.dc9b48"]]},{"id":"6920281d.dc9b48","type":"switch","z":"259c8713.b50e28","name":"","property":"topic","propertyType":"msg","rules":[{"t":"eq","v":"receiver/pump","vt":"str"},{"t":"eq","v":"receiver/focus","vt":"str"},{"t":"eq","v":"receiver/image","vt":"str"},{"t":"cont","v":"receiver/segmentation","vt":"str"}],"checkall":"true","repair":false,"outputs":4,"x":870,"y":2000,"wires":[["2f66e917.fee586"],["363ee47e.ed522c"],["45a52868.fe37c8"],["469cc189.903d"]]},{"id":"2f66e917.fee586","type":"switch","z":"259c8713.b50e28","name":"","property":"payload","propertyType":"msg","rules":[{"t":"eq","v":"Start","vt":"str"},{"t":"eq","v":"Done","vt":"str"},{"t":"eq","v":"Interrompted","vt":"str"}],"checkall":"true","repair":false,"outputs":3,"x":1050,"y":1800,"wires":[["5c0d0c35.3bcf14"],["cd01157d.0892d8"],["68e02bf4.7013e4"]]},{"id":"5c0d0c35.3bcf14","type":"change","z":"259c8713.b50e28","name":"The pump has started","rules":[{"t":"set","p":"payload","pt":"msg","to":"The pump has started","tot":"str"}],"action":"","property":"","from":"","to":"","reg":false,"x":1440,"y":1760,"wires":[[]]},{"id":"cd01157d.0892d8","type":"change","z":"259c8713.b50e28","name":"The pump has finished.","rules":[{"t":"set","p":"payload","pt":"msg","to":"The pump has finished.","tot":"str"}],"action":"","property":"","from":"","to":"","reg":false,"x":1430,"y":1800,"wires":[[]]},{"id":"68e02bf4.7013e4","type":"change","z":"259c8713.b50e28","name":"The pump has been stopped.","rules":[{"t":"set","p":"payload","pt":"msg","to":"The pump has been stopped.","tot":"str"}],"action":"","property":"","from":"","to":"","reg":false,"x":1420,"y":1840,"wires":[[]]},{"id":"363ee47e.ed522c","type":"switch","z":"259c8713.b50e28","name":"","property":"payload","propertyType":"msg","rules":[{"t":"eq","v":"Start","vt":"str"},{"t":"eq","v":"Done","vt":"str"},{"t":"eq","v":"Interrompted","vt":"str"}],"checkall":"true","repair":false,"outputs":3,"x":1050,"y":1920,"wires":[["c088b72f.326d98"],["36934381.14442c"],["89329cfe.c8f4"]]},{"id":"c088b72f.326d98","type":"change","z":"259c8713.b50e28","name":"The focus has started","rules":[{"t":"set","p":"payload","pt":"msg","to":"The focus has started","tot":"str"}],"action":"","property":"","from":"","to":"","reg":false,"x":1440,"y":1880,"wires":[[]]},{"id":"36934381.14442c","type":"change","z":"259c8713.b50e28","name":"The focus has finished.","rules":[{"t":"set","p":"payload","pt":"msg","to":"The focus has finished.","tot":"str"}],"action":"","property":"","from":"","to":"","reg":false,"x":1430,"y":1920,"wires":[[]]},{"id":"89329cfe.c8f4","type":"change","z":"259c8713.b50e28","name":"The focus has been stopped.","rules":[{"t":"set","p":"payload","pt":"msg","to":"The focus has been stopped.","tot":"str"}],"action":"","property":"","from":"","to":"","reg":false,"x":1420,"y":1960,"wires":[[]]},{"id":"fdb3b132.8b341","type":"mqtt out","z":"259c8713.b50e28","name":"","topic":"","qos":"","retain":"","broker":"cb2f36fe.1c7038","x":1810,"y":380,"wires":[]},{"id":"e46763fe.7fc83","type":"mqtt out","z":"259c8713.b50e28","name":"","topic":"","qos":"","retain":"","broker":"cb2f36fe.1c7038","x":1510,"y":460,"wires":[]},{"id":"61fb057d.3c251c","type":"mqtt out","z":"259c8713.b50e28","name":"","topic":"","qos":"","retain":"","broker":"cb2f36fe.1c7038","x":1810,"y":580,"wires":[]},{"id":"e2a7220a.09d43","type":"mqtt out","z":"259c8713.b50e28","name":"","topic":"","qos":"","retain":"","broker":"cb2f36fe.1c7038","x":1510,"y":660,"wires":[]},{"id":"577f7f72.6b68b","type":"ui_button","z":"259c8713.b50e28","name":"","group":"8cfadfab.327d7","order":7,"width":19,"height":1,"passthru":false,"label":"Start Acquisition","tooltip":"","color":"","bgcolor":"","icon":"","payload":"","payloadType":"str","topic":"actuator/image","x":1360,"y":1660,"wires":[["5218ba30.bbe844"]]},{"id":"d5111b87.2a64a8","type":"ui_text_input","z":"259c8713.b50e28","name":"generic_sleep_before","label":"Sleep duration before acquisition (s)","tooltip":"","group":"8cfadfab.327d7","order":1,"width":12,"height":1,"passthru":true,"mode":"number","delay":300,"topic":"generic_sleep_before","x":1340,"y":1360,"wires":[["3d141631.d548ba"]]},{"id":"3d141631.d548ba","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":1360,"wires":[]},{"id":"74c89905.79d968","type":"ui_text_input","z":"259c8713.b50e28","name":"generic_sleep_during","label":"Sleep duration between acquisition (s)","tooltip":"","group":"8cfadfab.327d7","order":2,"width":12,"height":1,"passthru":true,"mode":"number","delay":300,"topic":"generic_sleep_during","x":1340,"y":1520,"wires":[["644e95b9.04b7ac"]]},{"id":"644e95b9.04b7ac","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":1520,"wires":[]},{"id":"b50cf2f4.bfb84","type":"link out","z":"259c8713.b50e28","name":"","links":["7532db82.1dcf04"],"x":1475,"y":501,"wires":[]},{"id":"1e75fd6c.234753","type":"ui_slider","z":"259c8713.b50e28","name":"flowrate","label":"Flowrate 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