From c0e8df0c46971814cbde9c8b6871c2e49a0f7192 Mon Sep 17 00:00:00 2001 From: tpollina Date: Tue, 10 Dec 2019 00:29:54 -0800 Subject: [PATCH] Delete test.html --- test.html | 56 ------------------------------------------------------- 1 file changed, 56 deletions(-) delete mode 100644 test.html diff --git a/test.html b/test.html deleted file mode 100644 index 806cda4..0000000 --- a/test.html +++ /dev/null @@ -1,56 +0,0 @@ -cat "/media/tpollina/ACQUISITION/PlanktonScope_V2/exp_new_03/"$folder"/OBJECTS/ecotaxa_size_mesurement.tsv" | head -n 1 > /home/tpollina/Desktop/day_night_pyro/table.tsv -for folder in 0 1 10 11 14 15 17 18 2 20 21 23 24 25 26 27 28 29 3 30 31 32 33 34 35 36 37 38 39 4 40 41 42 43 44 45 46 47 48 49 5 50 51 52 53 54 55 56 57 6 7 9 -do - cat "/media/tpollina/ACQUISITION/PlanktonScope_V2/exp_new_03/"$folder"/OBJECTS/ecotaxa_size_mesurement.tsv" | tail -n +3 >> /home/tpollina/Desktop/day_night_pyro/table.tsv - cp /media/tpollina/ACQUISITION/PlanktonScope_V2/exp_new_03/$folder/OBJECTS/*.jpg /home/tpollina/Desktop/day_night_pyro/ -done - -cat /home/tpollina/Desktop/day_night_pyro/table.tsv | head -n 1 > /home/tpollina/Desktop/day_night_pyro/simplified.tsv - -#!/bin/bash -for i in $( ls *.jpg); do - grep $i table.tsv >> /home/tpollina/Desktop/day_night_pyro/simplified.tsv -done - - -cat "/media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/Chile_EXPORT/CHILE_DAY2_ST4_D9_2/ecotaxa_size_mesurement.tsv" | head -n 1 > /media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/figure_5_analysis_chile.tsv - -for replicat in 1 2 -do - for depth in 0 1 2 3 4 5 6 7 8 9 10 - do - cat "/media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/Chile_EXPORT/CHILE_DAY2_ST4_D"$depth"_"$replicat"/ecotaxa_size_mesurement.tsv" | tail -n +3 >> /media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/figure_5_analysis_chile.tsv - done -done - - -for replicat in 1 2 -do - for depth in 0 1 2 3 4 5 6 7 8 9 10 - do - echo $depth - cat "/media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/Chile_EXPORT/CHILE_DAY2_ST4_D"$depth"_"$replicat"/ecotaxa_size_mesurement.tsv" | tail -n +3 | awk '{ total += $41; count++ } END { print total/count }' >> /media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/mean_eccentricity.tsv - done -done - -for replicat in 1 2; do - for depth in 0 1 2 3 4 5 6 7 8 9 10; do - echo $depth - cp "/media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/Chile_EXPORT/CHILE_DAY2_ST4_D"$depth"_"$replicat"/" - done -done - - -for depth in 0 1 2 3 4 5 6 7 8 9 10; do - for obj in $(cat table.csv | grep $depth | awk -F ',' '{print $2}'); do - cp "/media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/Chile_EXPORT/CHILE_DAY2_ST4_D"$depth"_"0"/"$obj . - cp "/media/tpollina/TPOLLINA_WORK1/PLANKTOSCOPE/ACQUISITION/ENVIRONNEMENTAL_SAMPLES/CHILE/Chile_EXPORT/CHILE_DAY2_ST4_D"$depth"_"1"/"$obj . - done -done -for replicat in 1 2; do - for depth in 0 1 2 3 4 5 6 7 8 9 10; do - echo "cp CHILE_DAY2_ST4_D"$depth"_"$replicat"/*.jpg" ALL_OBJECTS/ - done -done - -