diff --git a/flows/flow_chaetoceros.json b/flows/flow_chaetoceros.json
deleted file mode 100644
index 17282c3..0000000
--- a/flows/flow_chaetoceros.json
+++ /dev/null
@@ -1,4436 +0,0 @@
-[
- {
- "id": "259c8713.b50e28",
- "type": "tab",
- "label": "Main",
- "disabled": false,
- "info": ""
- },
- {
- "id": "173a6e6b.e5ca6a",
- "type": "subflow",
- "name": "sample metadata",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 40,
- "y": 40,
- "wires": [
- {
- "id": "2582798f.eddcc6"
- },
- {
- "id": "1d28205b.58a37"
- },
- {
- "id": "1590a418.9166dc"
- },
- {
- "id": "d96f9fa3.d4cfc"
- },
- {
- "id": "784e2f78.9b96f"
- }
- ]
- }
- ],
- "out": [
- {
- "x": 840,
- "y": 40,
- "wires": [
- {
- "id": "a163194f.0b17c8",
- "port": 0
- },
- {
- "id": "914752eb.af1b",
- "port": 0
- },
- {
- "id": "6d0d6fc7.d30bb",
- "port": 0
- },
- {
- "id": "458408d7.2b3b68",
- "port": 0
- },
- {
- "id": "43b12fe4.c5aa3",
- "port": 0
- }
- ]
- }
- ],
- "env": [],
- "color": "#DDAA99"
- },
- {
- "id": "ae90e3e.7d9fba",
- "type": "subflow",
- "name": "Focus actuation",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 40,
- "y": 40,
- "wires": [
- {
- "id": "81a7627c.bac92"
- }
- ]
- }
- ],
- "out": [
- {
- "x": 800,
- "y": 200,
- "wires": [
- {
- "id": "5f4a72d1.9f6adc",
- "port": 0
- }
- ]
- }
- ],
- "env": [],
- "color": "#A6BBCF",
- "icon": "node-red/sort.svg"
- },
- {
- "id": "407d8cdb.3cb7cc",
- "type": "subflow",
- "name": "Pump actuation",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 40,
- "y": 40,
- "wires": [
- {
- "id": "d9a85435.ced5e"
- },
- {
- "id": "f859eeef.c59ed"
- }
- ]
- }
- ],
- "out": [
- {
- "x": 700,
- "y": 40,
- "wires": [
- {
- "id": "59b05f7f.9e83f8",
- "port": 0
- },
- {
- "id": "309468bc.ac83f8",
- "port": 0
- }
- ]
- }
- ],
- "env": [],
- "color": "#A6BBCF",
- "icon": "font-awesome/fa-recycle"
- },
- {
- "id": "bdd6e33e.5db3b8",
- "type": "subflow",
- "name": "acquisition metadata",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 50,
- "y": 30,
- "wires": [
- {
- "id": "47459dcd.81b594"
- },
- {
- "id": "eec199a3.a5a768"
- },
- {
- "id": "2d278f0a.1a97a"
- },
- {
- "id": "4074b907.e527e8"
- },
- {
- "id": "bc37aba3.0d1e78"
- },
- {
- "id": "d973d64a.8801e8"
- },
- {
- "id": "277b6764.edb1f8"
- },
- {
- "id": "75b10c7c.8433a4"
- },
- {
- "id": "bc39179c.bb3c08"
- }
- ]
- }
- ],
- "out": [
- {
- "x": 740,
- "y": 40,
- "wires": [
- {
- "id": "6ecc9468.0271dc",
- "port": 0
- },
- {
- "id": "5866c9a4.e1ca88",
- "port": 0
- },
- {
- "id": "259fd49a.160a3c",
- "port": 0
- },
- {
- "id": "5aba848a.7a861c",
- "port": 0
- },
- {
- "id": "7cea16e.c42ace8",
- "port": 0
- },
- {
- "id": "66a3425c.79aabc",
- "port": 0
- },
- {
- "id": "fa47061e.34a218",
- "port": 0
- },
- {
- "id": "6f36bd6d.154d14",
- "port": 0
- }
- ]
- },
- {
- "x": 900,
- "y": 360,
- "wires": [
- {
- "id": "f5c1aa13.3cfbf8",
- "port": 0
- }
- ]
- }
- ],
- "env": [],
- "color": "#DDAA99"
- },
- {
- "id": "ad5a5663.ce893",
- "type": "subflow",
- "name": "object metadata",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 40,
- "y": 40,
- "wires": [
- {
- "id": "21f41837.bb6c88"
- },
- {
- "id": "c2f235f2.eee388"
- },
- {
- "id": "2327c165.8397ae"
- }
- ]
- }
- ],
- "out": [
- {
- "x": 1060,
- "y": 159,
- "wires": [
- {
- "id": "47c7db4d.5eb014",
- "port": 0
- },
- {
- "id": "20c46fd4.6b984",
- "port": 0
- }
- ]
- },
- {
- "x": 1060,
- "y": 59,
- "wires": [
- {
- "id": "9b1b260f.e4b338",
- "port": 0
- },
- {
- "id": "86aa9817.45a2e8",
- "port": 0
- }
- ]
- }
- ],
- "env": [],
- "color": "#DDAA99"
- },
- {
- "id": "35488f4f.00498",
- "type": "subflow",
- "name": "Commands",
- "info": "",
- "category": "",
- "in": [],
- "out": [],
- "env": [],
- "color": "#FFCC66",
- "icon": "node-red-dashboard/ui_button.png"
- },
- {
- "id": "344146df.e4d5ba",
- "type": "subflow",
- "name": "Temperature regulation",
- "info": "",
- "category": "",
- "in": [],
- "out": [],
- "env": [],
- "color": "#FFCC66",
- "icon": "font-awesome/fa-bolt"
- },
- {
- "id": "91e5fd54.56f58",
- "type": "subflow",
- "name": "MQTT Receive & Plot",
- "info": "",
- "category": "",
- "in": [],
- "out": [],
- "env": [],
- "color": "#F3B567",
- "icon": "node-red/bridge.svg"
- },
- {
- "id": "4475ba6c.45604c",
- "type": "subflow",
- "name": "process metadata",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 40,
- "y": 80,
- "wires": [
- {
- "id": "d899c841.e6c178"
- }
- ]
- }
- ],
- "out": [
- {
- "x": 700,
- "y": 80,
- "wires": [
- {
- "id": "23e45d82.a01f82",
- "port": 0
- }
- ]
- }
- ],
- "env": [],
- "color": "#DDAA99"
- },
- {
- "id": "b73d5eb8.60ef3",
- "type": "subflow",
- "name": "Valves actuation",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 40,
- "y": 40,
- "wires": [
- {
- "id": "3808d004.94ea28"
- },
- {
- "id": "69799a39.13803c"
- },
- {
- "id": "f7cc1192.5a51e8"
- },
- {
- "id": "10ce45f6.3036ca"
- },
- {
- "id": "70dfb6bb.9319"
- },
- {
- "id": "a0b53585.93216"
- }
- ]
- }
- ],
- "out": [
- {
- "x": 680,
- "y": 40,
- "wires": [
- {
- "id": "c14cf94.1413e88",
- "port": 0
- },
- {
- "id": "7a0b6294.e887c4",
- "port": 0
- },
- {
- "id": "8729ec5c.cf4ab8",
- "port": 0
- },
- {
- "id": "d7b55d02.e41f1",
- "port": 0
- },
- {
- "id": "27bbe0f0.05b2c",
- "port": 0
- },
- {
- "id": "b31fd152.a5489",
- "port": 0
- }
- ]
- }
- ],
- "env": [],
- "color": "#A6BBCF",
- "icon": "node-red-contrib-camerapi/photo.png"
- },
- {
- "id": "1b486ba8.f8c41c",
- "type": "subflow",
- "name": "Datetime update",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 140,
- "y": 80,
- "wires": [
- {
- "id": "48033b32.2bca94"
- }
- ]
- }
- ],
- "out": [],
- "env": [],
- "color": "#DDAA99",
- "icon": "font-awesome/fa-clock-o"
- },
- {
- "id": "66c23d37.f72cdc",
- "type": "subflow",
- "name": "MQQT Cmds",
- "info": "",
- "category": "",
- "in": [
- {
- "x": 40,
- "y": 20,
- "wires": [
- {
- "id": "ca843dd8.d1c62"
- }
- ]
- }
- ],
- "out": [],
- "env": [],
- "color": "#DDAA99"
- },
- {
- "id": "8d959937.18735",
- "type": "subflow",
- "name": "Acquisition actuation",
- "info": "",
- "category": "",
- "in": [],
- "out": [],
- "env": [],
- "color": "#A6BBCF"
- },
- {
- "id": "cc8bc4eb.651868",
- "type": "ui_base",
- "theme": {
- "name": "theme-dark",
- "lightTheme": {
- "default": "#0094CE",
- "baseColor": "#5900ce",
- "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif",
- "edited": true,
- "reset": false
- },
- "darkTheme": {
- "default": "#097479",
- "baseColor": "#059276",
- "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif",
- "edited": true,
- "reset": false
- },
- "customTheme": {
- "name": "Untitled Theme 1",
- "default": "#4B7930",
- "baseColor": "#4B7930",
- "baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif"
- },
- "themeState": {
- "base-color": {
- "default": "#097479",
- "value": "#059276",
- "edited": true
- },
- "page-titlebar-backgroundColor": {
- "value": "#059276",
- "edited": false
- },
- "page-backgroundColor": {
- "value": "#111111",
- "edited": false
- },
- "page-sidebar-backgroundColor": {
- "value": "#ffffff",
- "edited": false
- },
- "group-textColor": {
- "value": "#08dcb2",
- "edited": false
- },
- "group-borderColor": {
- "value": "#555555",
- "edited": false
- },
- "group-backgroundColor": {
- "value": "#333333",
- "edited": false
- },
- "widget-textColor": {
- "value": "#eeeeee",
- "edited": false
- },
- "widget-backgroundColor": {
- "value": "#059276",
- "edited": false
- },
- "widget-borderColor": {
- "value": "#333333",
- "edited": false
- },
- "base-font": {
- "value": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif"
- }
- },
- "angularTheme": {
- "primary": "indigo",
- "accents": "blue",
- "warn": "red",
- "background": "grey"
- }
- },
- "site": {
- "name": "Node-RED Dashboard",
- "hideToolbar": "false",
- "allowSwipe": "false",
- "lockMenu": "true",
- "allowTempTheme": "true",
- "dateFormat": "DD/MM/YYYY",
- "sizes": {
- "sx": 56,
- "sy": 56,
- "gx": 5,
- "gy": 5,
- "cx": 5,
- "cy": 5,
- "px": 5,
- "py": 5
- }
- }
- },
- {
- "id": "737ec584.2eea2c",
- "type": "ui_tab",
- "z": "",
- "name": "GUI",
- "icon": "fa-eyedropper",
- "order": 2,
- "disabled": false,
- "hidden": false
- },
- {
- "id": "3e1ba03d.f01d8",
- "type": "ui_group",
- "z": "",
- "name": "Sample metadata",
- "tab": "737ec584.2eea2c",
- "order": 2,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "cef1e703.bcf3c8",
- "type": "ui_group",
- "z": "",
- "name": "Object metadata",
- "tab": "737ec584.2eea2c",
- "order": 6,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "fbd92986.1028c8",
- "type": "ui_group",
- "z": "",
- "name": "Focus actuation",
- "tab": "737ec584.2eea2c",
- "order": 4,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "707d9797.c8e798",
- "type": "ui_group",
- "z": "",
- "name": "Pump actuation",
- "tab": "737ec584.2eea2c",
- "order": 5,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "52159161.72187",
- "type": "ui_group",
- "z": "",
- "name": "Acquisition metadata",
- "tab": "737ec584.2eea2c",
- "order": 7,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "8cfadfab.327d7",
- "type": "ui_group",
- "z": "",
- "name": "MQTT Plots",
- "tab": "737ec584.2eea2c",
- "order": 11,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "b77ffa1b.942258",
- "type": "mqtt-broker",
- "z": "",
- "name": "",
- "broker": "127.0.0.1",
- "port": "1883",
- "clientid": "test",
- "usetls": false,
- "compatmode": false,
- "keepalive": "60",
- "cleansession": true,
- "birthTopic": "",
- "birthQos": "0",
- "birthPayload": "",
- "closeTopic": "",
- "closeQos": "0",
- "closePayload": "",
- "willTopic": "",
- "willQos": "0",
- "willPayload": ""
- },
- {
- "id": "cb2f36fe.1c7038",
- "type": "mqtt-broker",
- "z": "",
- "name": "",
- "broker": "0.0.0.0",
- "port": "1883",
- "clientid": "Client_node",
- "usetls": false,
- "compatmode": false,
- "keepalive": "60",
- "cleansession": true,
- "birthTopic": "",
- "birthQos": "0",
- "birthPayload": "",
- "closeTopic": "",
- "closeQos": "0",
- "closePayload": "",
- "willTopic": "",
- "willQos": "0",
- "willPayload": ""
- },
- {
- "id": "c6a276ac.3eb74",
- "type": "ui_group",
- "z": "",
- "name": "Commands",
- "tab": "737ec584.2eea2c",
- "order": 12,
- "disp": true,
- "width": 24,
- "collapse": false
- },
- {
- "id": "f5194cae.c84688",
- "type": "ui_group",
- "z": "",
- "name": "Streaming camera",
- "tab": "737ec584.2eea2c",
- "order": 3,
- "disp": true,
- "width": 24,
- "collapse": false
- },
- {
- "id": "b1321ea9.cfcf28",
- "type": "ui_group",
- "z": "",
- "name": "Process metadata",
- "tab": "737ec584.2eea2c",
- "order": 8,
- "disp": true,
- "width": 24,
- "collapse": false
- },
- {
- "id": "f41d0ecb.8be06",
- "type": "ui_group",
- "z": "",
- "name": "Valve actuation",
- "tab": "737ec584.2eea2c",
- "order": 9,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "9214d59d.e7b52",
- "type": "ui_group",
- "z": "",
- "name": "Datetime",
- "tab": "737ec584.2eea2c",
- "order": 1,
- "disp": true,
- "width": "24",
- "collapse": false
- },
- {
- "id": "d170ac9c.3b4828",
- "type": "ui_group",
- "z": "",
- "name": "Acquisition actuation",
- "tab": "737ec584.2eea2c",
- "order": 10,
- "disp": true,
- "width": 24,
- "collapse": false
- },
- {
- "id": "5b1410c.f92017",
- "type": "ui_spacer",
- "name": "spacer",
- "group": "8cfadfab.327d7",
- "order": 3,
- "width": 1,
- "height": 1
- },
- {
- "id": "26072b87.02a7a4",
- "type": "ui_spacer",
- "name": "spacer",
- "group": "8cfadfab.327d7",
- "order": 4,
- "width": 1,
- "height": 1
- },
- {
- "id": "a8c8abef.b19ea",
- "type": "ui_spacer",
- "name": "spacer",
- "group": "8cfadfab.327d7",
- "order": 6,
- "width": 1,
- "height": 1
- },
- {
- "id": "41550c87.dbb054",
- "type": "ui_spacer",
- "name": "spacer",
- "group": "8cfadfab.327d7",
- "order": 7,
- "width": 1,
- "height": 1
- },
- {
- "id": "6d0d6fc7.d30bb",
- "type": "ui_text_input",
- "z": "173a6e6b.e5ca6a",
- "name": "sample_ship",
- "label": "Name of the ship",
- "tooltip": "",
- "group": "3e1ba03d.f01d8",
- "order": 2,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "text",
- "delay": 300,
- "topic": "sample_ship",
- "x": 590,
- "y": 120,
- "wires": [
- []
- ]
- },
- {
- "id": "43b12fe4.c5aa3",
- "type": "ui_dropdown",
- "z": "173a6e6b.e5ca6a",
- "name": "sample_sampling_gear",
- "label": "Sampling gear",
- "tooltip": "",
- "place": "Select",
- "group": "3e1ba03d.f01d8",
- "order": 4,
- "width": 0,
- "height": 0,
- "passthru": true,
- "options": [
- {
- "label": "Plankton net",
- "value": "net",
- "type": "str"
- },
- {
- "label": "Niskin bottle 12L",
- "value": "niskin_12L",
- "type": "str"
- },
- {
- "label": "Niskin bottle 24L",
- "value": "niskin_24L",
- "type": "str"
- },
- {
- "label": "Pass Hull",
- "value": "pass_hull",
- "type": "str"
- }
- ],
- "payload": "",
- "topic": "sample_sampling_gear",
- "x": 550,
- "y": 200,
- "wires": [
- []
- ]
- },
- {
- "id": "458408d7.2b3b68",
- "type": "ui_text_input",
- "z": "173a6e6b.e5ca6a",
- "name": "sample_operator",
- "label": "Name of the operator",
- "tooltip": "",
- "group": "3e1ba03d.f01d8",
- "order": 3,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "text",
- "delay": 300,
- "topic": "sample_operator",
- "x": 570,
- "y": 160,
- "wires": [
- []
- ]
- },
- {
- "id": "a163194f.0b17c8",
- "type": "ui_text_input",
- "z": "173a6e6b.e5ca6a",
- "name": "sample_project",
- "label": "Name of the project*",
- "tooltip": "",
- "group": "3e1ba03d.f01d8",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "text",
- "delay": 300,
- "topic": "sample_project",
- "x": 580,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "914752eb.af1b",
- "type": "ui_text_input",
- "z": "173a6e6b.e5ca6a",
- "name": "sample_id",
- "label": "ID of the station*",
- "tooltip": "",
- "group": "3e1ba03d.f01d8",
- "order": 5,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "sample_id",
- "x": 590,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "e001a28.555566",
- "type": "function",
- "z": "259c8713.b50e28",
- "name": "get global",
- "func": "msg.payload={\n \n \"duration_bef_cycle\":global.get(\"duration_bef_cycle\"),\n \"duration_flush\":global.get(\"duration_flush\"),\n \"nb_img\":global.get(\"nb_img\"),\n \"duration_bef_seq\":global.get(\"duration_bef_seq\"),\n \"duration_bef_img\":global.get(\"duration_bef_img\"),\n \"duration_between\":global.get(\"duration_between\"),\n \n \"sample_project\":global.get(\"sample_project\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n //\"acq_instrument_id\":global.get(\"acq_instrument_id\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_min_esd\":global.get(\"acq_min_esd\"),\n \"acq_max_esd\":global.get(\"acq_max_esd\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_magnification\":global.get(\"magnification\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \n \"acq_camera_name\":\"Pi Camera V2.1 - 8MP\",\n \n \"object_date\":global.get(\"object_date\"),\n \"object_time\":global.get(\"object_time\"),\n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\"),\n \"object_depth_min\":global.get(\"object_depth_min\"),\n \"object_depth_max\":global.get(\"object_depth_max\"),\n \n \"process_pixel\":global.get(\"process_pixel\"),\n \"process_id\":global.get(\"process_id\")\n \n};\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1180,
- "y": 100,
- "wires": [
- [
- "76a6e6bb.a08b98"
- ]
- ]
- },
- {
- "id": "f25890f5.f2549",
- "type": "file",
- "z": "259c8713.b50e28",
- "name": "",
- "filename": "/home/pi/PlanktonScope/config.txt",
- "appendNewline": true,
- "createDir": true,
- "overwriteFile": "true",
- "encoding": "none",
- "x": 1520,
- "y": 100,
- "wires": [
- []
- ]
- },
- {
- "id": "f5c1aa13.3cfbf8",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "set optical config",
- "func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n global.set(\"magnification\",0.6);\n global.set(\"process_pixel\",1.86);\n global.set(\"sug_min\",60);\n global.set(\"sug_max\",670);\n global.set(\"sug_flowrate\",3);\n break;\n case \"16\":\n global.set(\"magnification\",0.94);\n global.set(\"process_pixel\",1.19);\n global.set(\"sug_min\",40);\n global.set(\"sug_max\",430);\n global.set(\"sug_flowrate\",2.4);\n break;\n case \"12\":\n global.set(\"magnification\",1.20);\n global.set(\"process_pixel\",0.94);\n global.set(\"sug_min\",30);\n global.set(\"sug_max\",340);\n global.set(\"sug_flowrate\",1.25);\n break;\n case \"8\":\n global.set(\"magnification\",1.78);\n global.set(\"process_pixel\",0.63);\n global.set(\"sug_min\",20);\n global.set(\"sug_max\",230);\n global.set(\"sug_flowrate\",0.42);\n break;\n case \"6\":\n global.set(\"magnification\",2.36);\n global.set(\"process_pixel\",0.48);\n global.set(\"sug_min\",15);\n global.set(\"sug_max\",170);\n global.set(\"sug_flowrate\",0.32);\n break;\n}\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 750,
- "y": 360,
- "wires": [
- []
- ]
- },
- {
- "id": "eb9181d8.25e01",
- "type": "ui_dropdown",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_fnumber_objective",
- "label": "M12 Lens*",
- "tooltip": "",
- "place": "Select option",
- "group": "52159161.72187",
- "order": 3,
- "width": 0,
- "height": 0,
- "passthru": true,
- "options": [
- {
- "label": "f 25mm 1/2\" 5MP IR",
- "value": 25,
- "type": "num"
- },
- {
- "label": "f 16mm 1/2.5\" 5MP IR",
- "value": 16,
- "type": "num"
- },
- {
- "label": "f 12mm 1/2.5\" 5MP IR",
- "value": 12,
- "type": "num"
- },
- {
- "label": "f 8mm 1/2.5\" 5MP IR",
- "value": 8,
- "type": "num"
- },
- {
- "label": "f 6mm 1/2.5\" 5MP IR",
- "value": 6,
- "type": "num"
- }
- ],
- "payload": "",
- "topic": "acq_fnumber_objective",
- "x": 526,
- "y": 360,
- "wires": [
- [
- "f5c1aa13.3cfbf8"
- ]
- ]
- },
- {
- "id": "5aba848a.7a861c",
- "type": "ui_numeric",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_minimum_mesh",
- "label": "Min fraction size (μm)",
- "tooltip": "",
- "group": "52159161.72187",
- "order": 8,
- "width": 0,
- "height": 0,
- "wrap": false,
- "passthru": true,
- "topic": "acq_minimum_mesh",
- "format": "{{value}}",
- "min": 0,
- "max": "300",
- "step": "10",
- "x": 536,
- "y": 160,
- "wires": [
- []
- ]
- },
- {
- "id": "7cea16e.c42ace8",
- "type": "ui_numeric",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_maximum_mesh",
- "label": "Max fraction size (μm)",
- "tooltip": "",
- "group": "52159161.72187",
- "order": 4,
- "width": 0,
- "height": 0,
- "wrap": false,
- "passthru": true,
- "topic": "acq_maximum_mesh",
- "format": "{{value}}",
- "min": "200",
- "max": "2000",
- "step": "100",
- "x": 536,
- "y": 200,
- "wires": [
- []
- ]
- },
- {
- "id": "6ecc9468.0271dc",
- "type": "ui_text_input",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_id",
- "label": "Acquisition unique ID*",
- "tooltip": "",
- "group": "52159161.72187",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "acq_id",
- "x": 586,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "259fd49a.160a3c",
- "type": "ui_dropdown",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_celltype",
- "label": "Thickness flowcell*",
- "tooltip": "",
- "place": "Select option",
- "group": "52159161.72187",
- "order": 7,
- "width": 0,
- "height": 0,
- "passthru": true,
- "options": [
- {
- "label": "200 μm µ-Slide I Luer",
- "value": 200,
- "type": "num"
- },
- {
- "label": "400 μm µ-Slide I Luer",
- "value": 400,
- "type": "num"
- },
- {
- "label": "600 μm µ-Slide I Luer",
- "value": 600,
- "type": "num"
- },
- {
- "label": "800 μm µ-Slide I Luer",
- "value": 800,
- "type": "num"
- }
- ],
- "payload": "",
- "topic": "acq_celltype",
- "x": 566,
- "y": 120,
- "wires": [
- []
- ]
- },
- {
- "id": "66a3425c.79aabc",
- "type": "ui_text_input",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_volume",
- "label": "Volume to pass (ml)",
- "tooltip": "",
- "group": "52159161.72187",
- "order": 2,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "acq_volume",
- "x": 566,
- "y": 240,
- "wires": [
- []
- ]
- },
- {
- "id": "5866c9a4.e1ca88",
- "type": "ui_text_input",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_instrument",
- "label": "Acquisition instrument",
- "tooltip": "PlanktonScope V2.1",
- "group": "52159161.72187",
- "order": 6,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "text",
- "delay": 300,
- "topic": "acq_instrument",
- "x": 556,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "76a6e6bb.a08b98",
- "type": "json",
- "z": "259c8713.b50e28",
- "name": "",
- "property": "payload",
- "action": "str",
- "pretty": true,
- "x": 1310,
- "y": 100,
- "wires": [
- [
- "f25890f5.f2549"
- ]
- ]
- },
- {
- "id": "594ec843.9d4458",
- "type": "file in",
- "z": "259c8713.b50e28",
- "name": "",
- "filename": "/home/pi/PlanktonScope/config.txt",
- "format": "utf8",
- "chunk": false,
- "sendError": false,
- "encoding": "none",
- "x": 340,
- "y": 60,
- "wires": [
- [
- "3bc1a977.4e9c76"
- ]
- ]
- },
- {
- "id": "d9ca0e54.f8b58",
- "type": "inject",
- "z": "259c8713.b50e28",
- "name": "on_load",
- "topic": "",
- "payload": "",
- "payloadType": "date",
- "repeat": "",
- "crontab": "",
- "once": true,
- "onceDelay": 0.1,
- "x": 100,
- "y": 60,
- "wires": [
- [
- "594ec843.9d4458",
- "ca38a11d.0ee54",
- "807d5cce.2bb1e",
- "fda01242.9576a8"
- ]
- ]
- },
- {
- "id": "3bc1a977.4e9c76",
- "type": "json",
- "z": "259c8713.b50e28",
- "name": "",
- "property": "payload",
- "action": "",
- "pretty": false,
- "x": 550,
- "y": 60,
- "wires": [
- [
- "7f101b25.0da4a4",
- "99b5a67.080f258",
- "a71ba4a6.c44c4",
- "fe5585e.a1ab078",
- "da9f1367.3a17a8",
- "d8dbecd.f7b3b9",
- "c986ae96.860ec8"
- ]
- ]
- },
- {
- "id": "2582798f.eddcc6",
- "type": "function",
- "z": "173a6e6b.e5ca6a",
- "name": "get sample_projet",
- "func": "msg.payload = msg.payload.sample_project;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 250,
- "y": 40,
- "wires": [
- [
- "a163194f.0b17c8"
- ]
- ]
- },
- {
- "id": "1590a418.9166dc",
- "type": "function",
- "z": "173a6e6b.e5ca6a",
- "name": "get sample_ship",
- "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 240,
- "y": 120,
- "wires": [
- [
- "6d0d6fc7.d30bb"
- ]
- ]
- },
- {
- "id": "1d28205b.58a37",
- "type": "function",
- "z": "173a6e6b.e5ca6a",
- "name": "get sample_id",
- "func": "msg.payload = msg.payload.sample_id+1;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 240,
- "y": 80,
- "wires": [
- [
- "914752eb.af1b"
- ]
- ]
- },
- {
- "id": "d96f9fa3.d4cfc",
- "type": "function",
- "z": "173a6e6b.e5ca6a",
- "name": "get sample_operator",
- "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 260,
- "y": 160,
- "wires": [
- [
- "458408d7.2b3b68"
- ]
- ]
- },
- {
- "id": "784e2f78.9b96f",
- "type": "function",
- "z": "173a6e6b.e5ca6a",
- "name": "get sample_sampling_gear",
- "func": "msg.payload = msg.payload.sample_sampling_gear;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 280,
- "y": 200,
- "wires": [
- [
- "43b12fe4.c5aa3"
- ]
- ]
- },
- {
- "id": "47459dcd.81b594",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_id",
- "func": "msg.payload = msg.payload.acq_id+1;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 210,
- "y": 40,
- "wires": [
- [
- "6ecc9468.0271dc"
- ]
- ]
- },
- {
- "id": "eec199a3.a5a768",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_instrument",
- "func": "msg.payload = msg.payload.acq_instrument;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 230,
- "y": 80,
- "wires": [
- [
- "5866c9a4.e1ca88"
- ]
- ]
- },
- {
- "id": "2d278f0a.1a97a",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_celltype",
- "func": "msg.payload = msg.payload.acq_celltype;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 220,
- "y": 120,
- "wires": [
- [
- "259fd49a.160a3c"
- ]
- ]
- },
- {
- "id": "4074b907.e527e8",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_minimum_mesh",
- "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 250,
- "y": 160,
- "wires": [
- [
- "5aba848a.7a861c"
- ]
- ]
- },
- {
- "id": "bc37aba3.0d1e78",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_maximum_mesh",
- "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 250,
- "y": 200,
- "wires": [
- [
- "7cea16e.c42ace8"
- ]
- ]
- },
- {
- "id": "d973d64a.8801e8",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_volume",
- "func": "msg.payload = msg.payload.acq_volume;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 220,
- "y": 240,
- "wires": [
- [
- "66a3425c.79aabc"
- ]
- ]
- },
- {
- "id": "bc39179c.bb3c08",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_fnumber_objective",
- "func": "msg.payload = msg.payload.acq_fnumber_objective;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 260,
- "y": 360,
- "wires": [
- [
- "eb9181d8.25e01"
- ]
- ]
- },
- {
- "id": "47c7db4d.5eb014",
- "type": "ui_numeric",
- "z": "ad5a5663.ce893",
- "name": "object_depth_min",
- "label": "Minimum depth (m)",
- "tooltip": "",
- "group": "cef1e703.bcf3c8",
- "order": 3,
- "width": 0,
- "height": 0,
- "wrap": false,
- "passthru": true,
- "topic": "object_depth_min",
- "format": "{{value}}",
- "min": "0",
- "max": "2000",
- "step": "1",
- "x": 610,
- "y": 120,
- "wires": [
- []
- ]
- },
- {
- "id": "20c46fd4.6b984",
- "type": "ui_numeric",
- "z": "ad5a5663.ce893",
- "name": "object_depth_max",
- "label": "Maximum depth (m)",
- "tooltip": "",
- "group": "cef1e703.bcf3c8",
- "order": 2,
- "width": 0,
- "height": 0,
- "wrap": false,
- "passthru": true,
- "topic": "object_depth_max",
- "format": "{{value}}",
- "min": "0",
- "max": "2000",
- "step": "1",
- "x": 610,
- "y": 160,
- "wires": [
- []
- ]
- },
- {
- "id": "1a5edafb.a05cf5",
- "type": "function",
- "z": "259c8713.b50e28",
- "name": "set global",
- "func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 1020,
- "y": 60,
- "wires": [
- [
- "e001a28.555566"
- ]
- ]
- },
- {
- "id": "21f41837.bb6c88",
- "type": "function",
- "z": "ad5a5663.ce893",
- "name": "get object_depth_min",
- "func": "msg.payload = msg.payload.object_depth_min;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 304,
- "y": 120,
- "wires": [
- [
- "47c7db4d.5eb014"
- ]
- ]
- },
- {
- "id": "c2f235f2.eee388",
- "type": "function",
- "z": "ad5a5663.ce893",
- "name": "get object_depth_max",
- "func": "msg.payload = msg.payload.object_depth_max;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 304,
- "y": 160,
- "wires": [
- [
- "20c46fd4.6b984"
- ]
- ]
- },
- {
- "id": "23e45d82.a01f82",
- "type": "ui_text_input",
- "z": "4475ba6c.45604c",
- "name": "process_id",
- "label": "Id of the process",
- "tooltip": "",
- "group": "b1321ea9.cfcf28",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "process_id",
- "x": 550,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "d899c841.e6c178",
- "type": "function",
- "z": "4475ba6c.45604c",
- "name": "get process_id",
- "func": "msg.payload = msg.payload.process_id+1;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 200,
- "y": 80,
- "wires": [
- [
- "23e45d82.a01f82"
- ]
- ]
- },
- {
- "id": "4fa9647b.8a2ebc",
- "type": "gpsd",
- "z": "ad5a5663.ce893",
- "name": "",
- "hostname": "localhost",
- "port": "2947",
- "tpv": true,
- "sky": false,
- "info": false,
- "device": false,
- "gst": false,
- "att": false,
- "x": 90,
- "y": 220,
- "wires": [
- [
- "2327c165.8397ae",
- "bbb7cb31.15121"
- ]
- ]
- },
- {
- "id": "767b43a1.de21dc",
- "type": "ui_worldmap",
- "z": "ad5a5663.ce893",
- "d": true,
- "group": "cef1e703.bcf3c8",
- "order": 1,
- "width": 0,
- "height": 0,
- "name": "",
- "lat": "1.5",
- "lon": "1.5",
- "zoom": "4",
- "layer": "OSM grey",
- "cluster": "1",
- "maxage": "",
- "usermenu": "hide",
- "layers": "hide",
- "panit": "false",
- "panlock": "false",
- "zoomlock": "false",
- "hiderightclick": "true",
- "coords": "deg",
- "showgrid": "false",
- "path": "/worldmap",
- "x": 640,
- "y": 200,
- "wires": []
- },
- {
- "id": "2327c165.8397ae",
- "type": "function",
- "z": "ad5a5663.ce893",
- "name": "get object_lat & object_lon",
- "func": "\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 320,
- "y": 200,
- "wires": [
- [
- "767b43a1.de21dc"
- ]
- ]
- },
- {
- "id": "fa47061e.34a218",
- "type": "ui_numeric",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_min_esd",
- "label": "Minimum size to segment (μm)",
- "tooltip": "",
- "group": "52159161.72187",
- "order": 9,
- "width": 0,
- "height": 0,
- "wrap": false,
- "passthru": true,
- "topic": "acq_min_esd",
- "format": "{{value}}",
- "min": 0,
- "max": "300",
- "step": "5",
- "x": 566,
- "y": 280,
- "wires": [
- []
- ]
- },
- {
- "id": "6f36bd6d.154d14",
- "type": "ui_numeric",
- "z": "bdd6e33e.5db3b8",
- "name": "acq_max_esd",
- "label": "Maximum size to segment (μm)",
- "tooltip": "",
- "group": "52159161.72187",
- "order": 5,
- "width": 0,
- "height": 0,
- "wrap": false,
- "passthru": true,
- "topic": "acq_max_esd",
- "format": "{{value}}",
- "min": "100",
- "max": "2000",
- "step": "5",
- "x": 556,
- "y": 320,
- "wires": [
- []
- ]
- },
- {
- "id": "277b6764.edb1f8",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_min_esd",
- "func": "msg.payload = msg.payload.acq_min_esd;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 230,
- "y": 280,
- "wires": [
- [
- "fa47061e.34a218"
- ]
- ]
- },
- {
- "id": "75b10c7c.8433a4",
- "type": "function",
- "z": "bdd6e33e.5db3b8",
- "name": "get acq_max_esd",
- "func": "msg.payload = msg.payload.acq_max_esd;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 230,
- "y": 320,
- "wires": [
- [
- "6f36bd6d.154d14"
- ]
- ]
- },
- {
- "id": "5f4a72d1.9f6adc",
- "type": "ui_text_input",
- "z": "ae90e3e.7d9fba",
- "name": "nb_step",
- "label": "Number of step(s)",
- "tooltip": "",
- "group": "fbd92986.1028c8",
- "order": 2,
- "width": 8,
- "height": 1,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "nb_step",
- "x": 520,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "81a7627c.bac92",
- "type": "function",
- "z": "ae90e3e.7d9fba",
- "name": "get generic_nb_step",
- "func": "msg.payload = msg.payload.generic_nb_step;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 240,
- "y": 40,
- "wires": [
- [
- "5f4a72d1.9f6adc"
- ]
- ]
- },
- {
- "id": "705dddc5.567bc4",
- "type": "ui_button",
- "z": "ae90e3e.7d9fba",
- "name": "DOWN",
- "group": "fbd92986.1028c8",
- "order": 3,
- "width": 6,
- "height": 1,
- "passthru": true,
- "label": "",
- "tooltip": "",
- "color": "",
- "bgcolor": "",
- "icon": "arrow_downward",
- "payload": "DOWN",
- "payloadType": "str",
- "topic": "actuator/focus",
- "x": 520,
- "y": 120,
- "wires": [
- [
- "4f74f017.00a58"
- ]
- ]
- },
- {
- "id": "b0aacff7.56651",
- "type": "ui_button",
- "z": "ae90e3e.7d9fba",
- "name": "UP",
- "group": "fbd92986.1028c8",
- "order": 1,
- "width": 6,
- "height": 1,
- "passthru": false,
- "label": "",
- "tooltip": "",
- "color": "",
- "bgcolor": "",
- "icon": "arrow_upwards",
- "payload": "UP",
- "payloadType": "str",
- "topic": "actuator/focus",
- "x": 530,
- "y": 81,
- "wires": [
- [
- "4f74f017.00a58"
- ]
- ]
- },
- {
- "id": "3e9c4e74.aee022",
- "type": "function",
- "z": "407d8cdb.3cb7cc",
- "name": "pump.js",
- "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar manual_volume= global.get(\"manual_volume\");\nvar flowrate= global.get(\"flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to pass\";\n \n}else if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Flowrate\";\n \n}else {\n volume = global.get(\"manual_volume\");\n nb_step=volume*507\n msg.volume = volume;\n flowrate = global.get(\"flowrate\");\n duration=(volume*60)/flowrate\n delay=(duration/nb_step)-0.005\n msg.topic = \"actuator/pump\";\n \n if(msg.payload === \"FORWARD\" & state===\"free\"){\n msg.payload='FORWARD '+delay+' '+nb_step;\n }\n if(msg.payload === \"BACKWARD\" & state===\"free\"){\n msg.payload='BACKWARD '+delay+' '+nb_step;\n }\n}\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 620,
- "y": 140,
- "wires": [
- [
- "98e2e9e0.fb7418"
- ]
- ],
- "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
- },
- {
- "id": "3f0df968.b0d286",
- "type": "ui_button",
- "z": "407d8cdb.3cb7cc",
- "name": "BACKWARD",
- "group": "707d9797.c8e798",
- "order": 2,
- "width": 6,
- "height": 1,
- "passthru": false,
- "label": "",
- "tooltip": "",
- "color": "",
- "bgcolor": "",
- "icon": "arrow_back",
- "payload": "BACKWARD",
- "payloadType": "str",
- "topic": "actuator/pump",
- "x": 470,
- "y": 120,
- "wires": [
- [
- "3e9c4e74.aee022"
- ]
- ]
- },
- {
- "id": "214fb242.9abb6e",
- "type": "ui_button",
- "z": "407d8cdb.3cb7cc",
- "name": "FORWARD",
- "group": "707d9797.c8e798",
- "order": 4,
- "width": 6,
- "height": 1,
- "passthru": true,
- "label": "",
- "tooltip": "",
- "color": "",
- "bgcolor": "",
- "icon": "arrow_forward",
- "payload": "FORWARD",
- "payloadType": "str",
- "topic": "actuator/pump",
- "x": 470,
- "y": 160,
- "wires": [
- [
- "3e9c4e74.aee022"
- ]
- ]
- },
- {
- "id": "1d58e86f.a3a9e8",
- "type": "rpi-gpio out",
- "z": "259c8713.b50e28",
- "name": "",
- "pin": "40",
- "set": "",
- "level": "0",
- "freq": "",
- "out": "out",
- "x": 400,
- "y": 100,
- "wires": []
- },
- {
- "id": "3e58f066.366b5",
- "type": "ui_template",
- "z": "259c8713.b50e28",
- "group": "f5194cae.c84688",
- "name": "Stream Pi Camera",
- "order": 1,
- "width": 24,
- "height": 11,
- "format": "",
- "storeOutMessages": true,
- "fwdInMessages": true,
- "templateScope": "local",
- "x": 750,
- "y": 340,
- "wires": [
- []
- ]
- },
- {
- "id": "b7d9455c.026588",
- "type": "switch",
- "z": "ae90e3e.7d9fba",
- "name": "",
- "property": "topic",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "actuator/focus",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Missing entry :",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 2,
- "x": 810,
- "y": 100,
- "wires": [
- [
- "fdb3b132.8b341"
- ],
- [
- "b9d996d6.37c2f8"
- ]
- ]
- },
- {
- "id": "b9d996d6.37c2f8",
- "type": "ui_toast",
- "z": "ae90e3e.7d9fba",
- "position": "dialog",
- "displayTime": "3",
- "highlight": "",
- "sendall": true,
- "outputs": 1,
- "ok": "OK",
- "cancel": "",
- "raw": false,
- "topic": "",
- "name": "",
- "x": 970,
- "y": 140,
- "wires": [
- []
- ]
- },
- {
- "id": "ca38a11d.0ee54",
- "type": "function",
- "z": "259c8713.b50e28",
- "name": "init LED",
- "func": "msg.payload=1;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 260,
- "y": 100,
- "wires": [
- [
- "1d58e86f.a3a9e8"
- ]
- ]
- },
- {
- "id": "98e2e9e0.fb7418",
- "type": "switch",
- "z": "407d8cdb.3cb7cc",
- "name": "",
- "property": "topic",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "actuator/pump",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Missing entry :",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 2,
- "x": 770,
- "y": 140,
- "wires": [
- [
- "61fb057d.3c251c"
- ],
- [
- "46a536f0.c83138"
- ]
- ]
- },
- {
- "id": "46a536f0.c83138",
- "type": "ui_toast",
- "z": "407d8cdb.3cb7cc",
- "position": "dialog",
- "displayTime": "3",
- "highlight": "",
- "sendall": true,
- "outputs": 1,
- "ok": "OK",
- "cancel": "",
- "raw": false,
- "topic": "",
- "name": "",
- "x": 930,
- "y": 160,
- "wires": [
- []
- ]
- },
- {
- "id": "24ffcf03.2a51b",
- "type": "ui_button",
- "z": "407d8cdb.3cb7cc",
- "name": "stop pump",
- "group": "707d9797.c8e798",
- "order": 5,
- "width": 4,
- "height": 1,
- "passthru": true,
- "label": "STOP PUMP",
- "tooltip": "",
- "color": "",
- "bgcolor": "#AD1625",
- "icon": "",
- "payload": "off",
- "payloadType": "str",
- "topic": "actuator/wait",
- "x": 470,
- "y": 200,
- "wires": [
- [
- "e2a7220a.09d43"
- ]
- ]
- },
- {
- "id": "4f74f017.00a58",
- "type": "function",
- "z": "ae90e3e.7d9fba",
- "name": "focus.js",
- "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar nb_step= global.get(\"nb_step\");\n\nif (nb_step === undefined || nb_step === \"\" || nb_step === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Number of steps\";\n \n}else {\n nb_step= global.get(\"nb_step\");\n if(msg.payload === \"UP\" & state===\"free\"){\n msg.payload=\"FORWARD \"+nb_step;\n }\n if(msg.payload === \"DOWN\" & state===\"free\"){\n msg.payload=\"BACKWARD \"+nb_step;\n }\n}\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 660,
- "y": 100,
- "wires": [
- [
- "b7d9455c.026588"
- ]
- ],
- "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
- },
- {
- "id": "52cc1de5.b78e84",
- "type": "ui_button",
- "z": "ae90e3e.7d9fba",
- "name": "stop focus",
- "group": "fbd92986.1028c8",
- "order": 4,
- "width": 4,
- "height": 1,
- "passthru": true,
- "label": "STOP FOCUS",
- "tooltip": "",
- "color": "",
- "bgcolor": "#AD1625",
- "icon": "",
- "payload": "off",
- "payloadType": "str",
- "topic": "actuator/wait",
- "x": 510,
- "y": 160,
- "wires": [
- [
- "e46763fe.7fc83"
- ]
- ]
- },
- {
- "id": "39cad6fb.1503ca",
- "type": "ui_button",
- "z": "35488f4f.00498",
- "name": "",
- "group": "c6a276ac.3eb74",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": false,
- "label": "Reboot",
- "tooltip": "",
- "color": "",
- "bgcolor": "#AD1625",
- "icon": "",
- "payload": "off",
- "payloadType": "str",
- "topic": "reboot",
- "x": 220,
- "y": 80,
- "wires": [
- [
- "95b876d4.07c708"
- ]
- ]
- },
- {
- "id": "1f53f29b.feee4d",
- "type": "exec",
- "z": "35488f4f.00498",
- "command": "sudo",
- "addpay": true,
- "append": "",
- "useSpawn": "false",
- "timer": "2",
- "oldrc": false,
- "name": "cmd",
- "x": 530,
- "y": 80,
- "wires": [
- [],
- [],
- []
- ]
- },
- {
- "id": "e325458b.95bff8",
- "type": "ui_button",
- "z": "35488f4f.00498",
- "name": "",
- "group": "c6a276ac.3eb74",
- "order": 2,
- "width": 0,
- "height": 0,
- "passthru": false,
- "label": "Shutdown",
- "tooltip": "",
- "color": "",
- "bgcolor": "#AD1625",
- "icon": "",
- "payload": "off",
- "payloadType": "str",
- "topic": "shutdown",
- "x": 220,
- "y": 140,
- "wires": [
- [
- "95b876d4.07c708"
- ]
- ]
- },
- {
- "id": "95b876d4.07c708",
- "type": "python3-function",
- "z": "35488f4f.00498",
- "name": "action",
- "func": "#!/usr/bin/python\nimport smbus\nimport time\nbus = smbus.SMBus(1)\ntime.sleep(1)\n#turn off fan RGB\nbus.write_byte_data(0x0d, 0x07, 0x00)\nbus.write_byte_data(0x0d, 0x07, 0x00)\n\nmsg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg",
- "outputs": 1,
- "x": 390,
- "y": 100,
- "wires": [
- [
- "d348474b.d756a8",
- "1f53f29b.feee4d"
- ]
- ]
- },
- {
- "id": "d348474b.d756a8",
- "type": "exec",
- "z": "35488f4f.00498",
- "command": "i2cdetect -y 1",
- "addpay": false,
- "append": "",
- "useSpawn": "false",
- "timer": "1",
- "oldrc": false,
- "name": "i2c update",
- "x": 550,
- "y": 140,
- "wires": [
- [],
- [],
- []
- ]
- },
- {
- "id": "cdd1b550.da18e8",
- "type": "mqtt in",
- "z": "91e5fd54.56f58",
- "name": "",
- "topic": "receiver/#",
- "qos": "0",
- "datatype": "auto",
- "broker": "b77ffa1b.942258",
- "x": 80,
- "y": 40,
- "wires": [
- [
- "6920281d.dc9b48"
- ]
- ]
- },
- {
- "id": "6920281d.dc9b48",
- "type": "switch",
- "z": "91e5fd54.56f58",
- "name": "",
- "property": "topic",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "receiver/pump",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "receiver/focus",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "receiver/image",
- "vt": "str"
- },
- {
- "t": "cont",
- "v": "receiver/segmentation",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 4,
- "x": 230,
- "y": 40,
- "wires": [
- [
- "2f66e917.fee586"
- ],
- [
- "363ee47e.ed522c"
- ],
- [
- "45a52868.fe37c8"
- ],
- [
- "469cc189.903d"
- ]
- ]
- },
- {
- "id": "2f66e917.fee586",
- "type": "switch",
- "z": "91e5fd54.56f58",
- "name": "",
- "property": "payload",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "Start",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Done",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Interrompted",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 3,
- "x": 470,
- "y": 40,
- "wires": [
- [
- "5c0d0c35.3bcf14"
- ],
- [
- "cd01157d.0892d8"
- ],
- [
- "68e02bf4.7013e4"
- ]
- ]
- },
- {
- "id": "5c0d0c35.3bcf14",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The pump has started",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The pump has started",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 920,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "cd01157d.0892d8",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The pump has finished.",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The pump has finished.",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 910,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "68e02bf4.7013e4",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The pump has been stopped.",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The pump has been stopped.",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 900,
- "y": 120,
- "wires": [
- []
- ]
- },
- {
- "id": "363ee47e.ed522c",
- "type": "switch",
- "z": "91e5fd54.56f58",
- "name": "",
- "property": "payload",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "Start",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Done",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Interrompted",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 3,
- "x": 470,
- "y": 200,
- "wires": [
- [
- "c088b72f.326d98"
- ],
- [
- "36934381.14442c"
- ],
- [
- "89329cfe.c8f4"
- ]
- ]
- },
- {
- "id": "c088b72f.326d98",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The focus has started",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The focus has started",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 920,
- "y": 200,
- "wires": [
- []
- ]
- },
- {
- "id": "36934381.14442c",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The focus has finished.",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The focus has finished.",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 910,
- "y": 240,
- "wires": [
- []
- ]
- },
- {
- "id": "89329cfe.c8f4",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The focus has been stopped.",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The focus has been stopped.",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 900,
- "y": 280,
- "wires": [
- []
- ]
- },
- {
- "id": "fdb3b132.8b341",
- "type": "mqtt out",
- "z": "ae90e3e.7d9fba",
- "name": "",
- "topic": "",
- "qos": "",
- "retain": "",
- "broker": "cb2f36fe.1c7038",
- "x": 950,
- "y": 80,
- "wires": []
- },
- {
- "id": "e46763fe.7fc83",
- "type": "mqtt out",
- "z": "ae90e3e.7d9fba",
- "name": "",
- "topic": "",
- "qos": "",
- "retain": "",
- "broker": "cb2f36fe.1c7038",
- "x": 650,
- "y": 160,
- "wires": []
- },
- {
- "id": "61fb057d.3c251c",
- "type": "mqtt out",
- "z": "407d8cdb.3cb7cc",
- "name": "",
- "topic": "",
- "qos": "",
- "retain": "",
- "broker": "cb2f36fe.1c7038",
- "x": 910,
- "y": 120,
- "wires": []
- },
- {
- "id": "e2a7220a.09d43",
- "type": "mqtt out",
- "z": "407d8cdb.3cb7cc",
- "name": "",
- "topic": "",
- "qos": "",
- "retain": "",
- "broker": "cb2f36fe.1c7038",
- "x": 610,
- "y": 200,
- "wires": []
- },
- {
- "id": "45a52868.fe37c8",
- "type": "switch",
- "z": "91e5fd54.56f58",
- "name": "",
- "property": "payload",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "Start",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Done",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Interrompted",
- "vt": "str"
- },
- {
- "t": "cont",
- "v": "jpg",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 4,
- "x": 470,
- "y": 360,
- "wires": [
- [
- "113c9b93.455814"
- ],
- [
- "29a7c6de.6ac2ea"
- ],
- [
- "f1b07b24.b85718"
- ],
- [
- "446a811b.25e4b",
- "a57fea5b.59eb5"
- ]
- ]
- },
- {
- "id": "177a91d4.f1016e",
- "type": "switch",
- "z": "91e5fd54.56f58",
- "name": "",
- "property": "payload",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "Start",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Done",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 2,
- "x": 650,
- "y": 560,
- "wires": [
- [
- "5d717a25.3437e4"
- ],
- [
- "7d713b16.235164"
- ]
- ]
- },
- {
- "id": "29a7c6de.6ac2ea",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The acquisition has finished.",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The acquisition has finished.",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 900,
- "y": 400,
- "wires": [
- [
- "a57fea5b.59eb5"
- ]
- ]
- },
- {
- "id": "f1b07b24.b85718",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The acquisition has been stopped.",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The acquisition has been stopped.",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 880,
- "y": 440,
- "wires": [
- [
- "a57fea5b.59eb5"
- ]
- ]
- },
- {
- "id": "113c9b93.455814",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The acquisition has started",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The acquisition has started",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 900,
- "y": 360,
- "wires": [
- [
- "a57fea5b.59eb5"
- ]
- ]
- },
- {
- "id": "446a811b.25e4b",
- "type": "function",
- "z": "91e5fd54.56f58",
- "name": "img_counter.js",
- "func": "img_counter=global.get('img_counter')\nimg_counter=img_counter+1\nglobal.set('img_counter',img_counter)\nmsg.payload = img_counter\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 780,
- "y": 480,
- "wires": [
- [
- "57014db.1bbe0b4"
- ]
- ]
- },
- {
- "id": "803b507f.9e38c",
- "type": "function",
- "z": "91e5fd54.56f58",
- "name": "obj_counter.js",
- "func": "obj_counter=global.get('obj_counter')\nobj_counter=obj_counter+1\nglobal.set('obj_counter',obj_counter)\nmsg.payload = obj_counter\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 780,
- "y": 640,
- "wires": [
- [
- "6ad4ae5e.62f4a"
- ]
- ]
- },
- {
- "id": "57014db.1bbe0b4",
- "type": "ui_chart",
- "z": "91e5fd54.56f58",
- "name": "img_counter",
- "group": "8cfadfab.327d7",
- "order": 2,
- "width": 23,
- "height": 2,
- "label": "img_counter",
- "chartType": "horizontalBar",
- "legend": "false",
- "xformat": "HH:mm:ss",
- "interpolate": "linear",
- "nodata": "",
- "dot": false,
- "ymin": "",
- "ymax": "",
- "removeOlder": 1,
- "removeOlderPoints": "",
- "removeOlderUnit": "3600",
- "cutout": 0,
- "useOneColor": false,
- "colors": [
- "#1f77b4",
- "#aec7e8",
- "#ff7f0e",
- "#2ca02c",
- "#98df8a",
- "#d62728",
- "#ff9896",
- "#9467bd",
- "#c5b0d5"
- ],
- "useOldStyle": false,
- "outputs": 1,
- "x": 950,
- "y": 480,
- "wires": [
- []
- ]
- },
- {
- "id": "469cc189.903d",
- "type": "switch",
- "z": "91e5fd54.56f58",
- "name": "",
- "property": "topic",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "receiver/segmentation",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "receiver/segmentation/object_id",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "receiver/segmentation/metric",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 3,
- "x": 470,
- "y": 560,
- "wires": [
- [
- "177a91d4.f1016e"
- ],
- [
- "803b507f.9e38c"
- ],
- [
- "73f0f4b.8dd430c"
- ]
- ]
- },
- {
- "id": "7d713b16.235164",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The segmentation has finished.",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The segmentation has finished.",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 890,
- "y": 600,
- "wires": [
- [
- "a57fea5b.59eb5"
- ]
- ]
- },
- {
- "id": "5d717a25.3437e4",
- "type": "change",
- "z": "91e5fd54.56f58",
- "name": "The segmentation has started",
- "rules": [
- {
- "t": "set",
- "p": "payload",
- "pt": "msg",
- "to": "The segmentation has started",
- "tot": "str"
- }
- ],
- "action": "",
- "property": "",
- "from": "",
- "to": "",
- "reg": false,
- "x": 890,
- "y": 560,
- "wires": [
- [
- "a57fea5b.59eb5"
- ]
- ]
- },
- {
- "id": "6ad4ae5e.62f4a",
- "type": "ui_chart",
- "z": "91e5fd54.56f58",
- "name": "obj_counter",
- "group": "8cfadfab.327d7",
- "order": 5,
- "width": 23,
- "height": 2,
- "label": "obj_counter",
- "chartType": "horizontalBar",
- "legend": "false",
- "xformat": "HH:mm:ss",
- "interpolate": "linear",
- "nodata": "",
- "dot": false,
- "ymin": "",
- "ymax": "",
- "removeOlder": 1,
- "removeOlderPoints": "",
- "removeOlderUnit": "3600",
- "cutout": 0,
- "useOneColor": true,
- "colors": [
- "#1f77b4",
- "#aec7e8",
- "#ff7f0e",
- "#2ca02c",
- "#98df8a",
- "#d62728",
- "#ff9896",
- "#9467bd",
- "#c5b0d5"
- ],
- "useOldStyle": false,
- "outputs": 1,
- "x": 950,
- "y": 640,
- "wires": [
- []
- ]
- },
- {
- "id": "32b535dc.2d85ea",
- "type": "function",
- "z": "91e5fd54.56f58",
- "name": "",
- "func": "msg.payload=msg.payload.object_area\nmsg.topic=\"area\"\n\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 810,
- "y": 700,
- "wires": [
- [
- "1624f1bf.604bfe"
- ]
- ]
- },
- {
- "id": "73f0f4b.8dd430c",
- "type": "json",
- "z": "91e5fd54.56f58",
- "name": "",
- "property": "payload",
- "action": "",
- "pretty": false,
- "x": 650,
- "y": 700,
- "wires": [
- [
- "32b535dc.2d85ea"
- ]
- ]
- },
- {
- "id": "6fc7332f.89431c",
- "type": "exec",
- "z": "91e5fd54.56f58",
- "command": "free -m | grep \"Mem\" | awk -F ' ' '{print $3}'",
- "addpay": false,
- "append": "",
- "useSpawn": "",
- "timer": "",
- "name": "Get memory used",
- "x": 750,
- "y": 780,
- "wires": [
- [
- "42781732.a6ab58"
- ],
- [],
- []
- ]
- },
- {
- "id": "7cdef10d.cb2f2",
- "type": "inject",
- "z": "91e5fd54.56f58",
- "name": "",
- "topic": "",
- "payload": "",
- "payloadType": "num",
- "repeat": "1",
- "crontab": "",
- "once": false,
- "onceDelay": "",
- "x": 570,
- "y": 780,
- "wires": [
- [
- "6fc7332f.89431c"
- ]
- ]
- },
- {
- "id": "42781732.a6ab58",
- "type": "ui_chart",
- "z": "91e5fd54.56f58",
- "name": "",
- "group": "8cfadfab.327d7",
- "order": 1,
- "width": 0,
- "height": 0,
- "label": "Memory load",
- "chartType": "line",
- "legend": "false",
- "xformat": "auto",
- "interpolate": "linear",
- "nodata": "",
- "dot": false,
- "ymin": "",
- "ymax": "",
- "removeOlder": 1,
- "removeOlderPoints": "",
- "removeOlderUnit": "3600",
- "cutout": 0,
- "useOneColor": false,
- "colors": [
- "#1f77b4",
- "#aec7e8",
- "#ff7f0e",
- "#2ca02c",
- "#98df8a",
- "#d62728",
- "#ff9896",
- "#9467bd",
- "#c5b0d5"
- ],
- "useOldStyle": false,
- "outputs": 1,
- "x": 950,
- "y": 760,
- "wires": [
- []
- ]
- },
- {
- "id": "1624f1bf.604bfe",
- "type": "ui_chart",
- "z": "91e5fd54.56f58",
- "name": "",
- "group": "8cfadfab.327d7",
- "order": 8,
- "width": 0,
- "height": 0,
- "label": "chart",
- "chartType": "line",
- "legend": "false",
- "xformat": "HH:mm:ss",
- "interpolate": "linear",
- "nodata": "",
- "dot": true,
- "ymin": "",
- "ymax": "",
- "removeOlder": 1,
- "removeOlderPoints": "1000",
- "removeOlderUnit": "3600",
- "cutout": 0,
- "useOneColor": false,
- "colors": [
- "#1f77b4",
- "#aec7e8",
- "#ff7f0e",
- "#2ca02c",
- "#98df8a",
- "#d62728",
- "#ff9896",
- "#9467bd",
- "#c5b0d5"
- ],
- "useOldStyle": false,
- "outputs": 1,
- "x": 970,
- "y": 700,
- "wires": [
- []
- ]
- },
- {
- "id": "7f101b25.0da4a4",
- "type": "subflow:173a6e6b.e5ca6a",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 750,
- "y": 60,
- "wires": [
- [
- "1a5edafb.a05cf5"
- ]
- ]
- },
- {
- "id": "d8dbecd.f7b3b9",
- "type": "subflow:ae90e3e.7d9fba",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 740,
- "y": 260,
- "wires": [
- [
- "1a5edafb.a05cf5"
- ]
- ]
- },
- {
- "id": "309468bc.ac83f8",
- "type": "ui_text_input",
- "z": "407d8cdb.3cb7cc",
- "name": "manual_volume",
- "label": "Volume to pass (ml)",
- "tooltip": "",
- "group": "707d9797.c8e798",
- "order": 3,
- "width": 8,
- "height": 1,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "manual_volume",
- "x": 460,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "f859eeef.c59ed",
- "type": "function",
- "z": "407d8cdb.3cb7cc",
- "name": "get generic_manual_volume",
- "func": "msg.payload = msg.payload.generic_manual_volume;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 220,
- "y": 80,
- "wires": [
- [
- "309468bc.ac83f8"
- ]
- ]
- },
- {
- "id": "59b05f7f.9e83f8",
- "type": "ui_slider",
- "z": "407d8cdb.3cb7cc",
- "name": "flowrate",
- "label": "Flowrate (ml/min)*",
- "tooltip": "",
- "group": "707d9797.c8e798",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": true,
- "outs": "end",
- "topic": "flowrate",
- "min": 0,
- "max": "20",
- "step": "0.1",
- "x": 480,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "d9a85435.ced5e",
- "type": "function",
- "z": "407d8cdb.3cb7cc",
- "name": "get generic.flowrate",
- "func": "msg.payload = msg.payload.generic_flowrate;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 190,
- "y": 40,
- "wires": [
- [
- "59b05f7f.9e83f8"
- ]
- ]
- },
- {
- "id": "c986ae96.860ec8",
- "type": "subflow:407d8cdb.3cb7cc",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 740,
- "y": 300,
- "wires": [
- [
- "1a5edafb.a05cf5"
- ]
- ]
- },
- {
- "id": "99b5a67.080f258",
- "type": "subflow:bdd6e33e.5db3b8",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 760,
- "y": 100,
- "wires": [
- [
- "1a5edafb.a05cf5"
- ],
- [
- "e001a28.555566"
- ]
- ]
- },
- {
- "id": "a71ba4a6.c44c4",
- "type": "subflow:ad5a5663.ce893",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 740,
- "y": 140,
- "wires": [
- [
- "1a5edafb.a05cf5"
- ],
- [
- "e001a28.555566"
- ]
- ]
- },
- {
- "id": "9c301fc6.9a9318",
- "type": "subflow:35488f4f.00498",
- "z": "259c8713.b50e28",
- "name": "System commands",
- "env": [],
- "x": 750,
- "y": 460,
- "wires": []
- },
- {
- "id": "4d5b9f01.270e88",
- "type": "exec",
- "z": "344146df.e4d5ba",
- "command": "vcgencmd measure_temp | tr -d \"temp=\" | tr -d \"'C\" | tr -d \"\\n\"",
- "addpay": false,
- "append": "",
- "useSpawn": "",
- "timer": "",
- "name": "RPi Temp.",
- "x": 350,
- "y": 80,
- "wires": [
- [
- "4f3fb60b.912848"
- ],
- [],
- []
- ]
- },
- {
- "id": "1c4bc7ff.94aa8",
- "type": "inject",
- "z": "344146df.e4d5ba",
- "name": "",
- "topic": "",
- "payload": "",
- "payloadType": "date",
- "repeat": "10",
- "crontab": "",
- "once": false,
- "onceDelay": "",
- "x": 190,
- "y": 80,
- "wires": [
- [
- "4d5b9f01.270e88"
- ]
- ]
- },
- {
- "id": "4f3fb60b.912848",
- "type": "python3-function",
- "z": "344146df.e4d5ba",
- "name": "fan.py",
- "func": "#!/usr/bin/python\nimport smbus\nimport sys\n\ntemp = msg[\"payload\"]\n\ntemp = int(temp.split('.',1)[0])\n\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n\nif temp < 38:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\nif temp > 42:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)",
- "outputs": 1,
- "x": 530,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "ee70d541.87713",
- "type": "subflow:344146df.e4d5ba",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 300,
- "y": 140,
- "wires": []
- },
- {
- "id": "c14cf94.1413e88",
- "type": "ui_text_input",
- "z": "b73d5eb8.60ef3",
- "name": "duration_flush",
- "label": "Duration of the flushing (s)",
- "tooltip": "",
- "group": "f41d0ecb.8be06",
- "order": 2,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "duration_flush",
- "x": 520,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "d7b55d02.e41f1",
- "type": "ui_text_input",
- "z": "b73d5eb8.60ef3",
- "name": "duration_bef_seq",
- "label": "Duration before sequence (s)",
- "tooltip": "",
- "group": "f41d0ecb.8be06",
- "order": 4,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "duration_bef_seq",
- "x": 510,
- "y": 160,
- "wires": [
- []
- ]
- },
- {
- "id": "8729ec5c.cf4ab8",
- "type": "ui_text_input",
- "z": "b73d5eb8.60ef3",
- "name": "nb_img",
- "label": "Number of images per acquisition",
- "tooltip": "",
- "group": "f41d0ecb.8be06",
- "order": 3,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "nb_img",
- "x": 540,
- "y": 120,
- "wires": [
- []
- ]
- },
- {
- "id": "3808d004.94ea28",
- "type": "function",
- "z": "b73d5eb8.60ef3",
- "name": "get duration_flush",
- "func": "msg.payload = msg.payload.duration_flush;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 210,
- "y": 80,
- "wires": [
- [
- "c14cf94.1413e88"
- ]
- ]
- },
- {
- "id": "f7cc1192.5a51e8",
- "type": "function",
- "z": "b73d5eb8.60ef3",
- "name": "get nb_img",
- "func": "msg.payload = msg.payload.nb_img;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 190,
- "y": 120,
- "wires": [
- [
- "8729ec5c.cf4ab8"
- ]
- ]
- },
- {
- "id": "10ce45f6.3036ca",
- "type": "function",
- "z": "b73d5eb8.60ef3",
- "name": "get duration_bef_seq",
- "func": "msg.payload = msg.payload.duration_bef_seq;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 220,
- "y": 160,
- "wires": [
- [
- "d7b55d02.e41f1"
- ]
- ]
- },
- {
- "id": "27bbe0f0.05b2c",
- "type": "ui_text_input",
- "z": "b73d5eb8.60ef3",
- "name": "duration_bef_img",
- "label": "Duration before image (s)",
- "tooltip": "",
- "group": "f41d0ecb.8be06",
- "order": 5,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "duration_bef_img",
- "x": 510,
- "y": 200,
- "wires": [
- []
- ]
- },
- {
- "id": "70dfb6bb.9319",
- "type": "function",
- "z": "b73d5eb8.60ef3",
- "name": "get duration_bef_img",
- "func": "msg.payload = msg.payload.duration_bef_img;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 220,
- "y": 200,
- "wires": [
- [
- "27bbe0f0.05b2c"
- ]
- ]
- },
- {
- "id": "b31fd152.a5489",
- "type": "ui_text_input",
- "z": "b73d5eb8.60ef3",
- "name": "duration_between",
- "label": "Duration between acquisition (s)",
- "tooltip": "",
- "group": "f41d0ecb.8be06",
- "order": 6,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "duration_between",
- "x": 510,
- "y": 240,
- "wires": [
- []
- ]
- },
- {
- "id": "a0b53585.93216",
- "type": "function",
- "z": "b73d5eb8.60ef3",
- "name": "get duration_between",
- "func": "msg.payload = msg.payload.duration_between;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 220,
- "y": 240,
- "wires": [
- [
- "b31fd152.a5489"
- ]
- ]
- },
- {
- "id": "fee8c0fa.108778",
- "type": "subflow:91e5fd54.56f58",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 760,
- "y": 380,
- "wires": []
- },
- {
- "id": "fe5585e.a1ab078",
- "type": "subflow:4475ba6c.45604c",
- "z": "259c8713.b50e28",
- "name": "process metadata",
- "env": [],
- "x": 750,
- "y": 180,
- "wires": [
- [
- "1a5edafb.a05cf5"
- ]
- ]
- },
- {
- "id": "da9f1367.3a17a8",
- "type": "subflow:b73d5eb8.60ef3",
- "z": "259c8713.b50e28",
- "d": true,
- "name": "Valve actuation",
- "env": [],
- "x": 740,
- "y": 220,
- "wires": [
- [
- "1a5edafb.a05cf5"
- ]
- ],
- "icon": "node-red-dashboard/ui_switch.png"
- },
- {
- "id": "69799a39.13803c",
- "type": "function",
- "z": "b73d5eb8.60ef3",
- "name": "get duration_bef_cycle",
- "func": "msg.payload = msg.payload.duration_bef_cycle;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 220,
- "y": 40,
- "wires": [
- [
- "7a0b6294.e887c4"
- ]
- ]
- },
- {
- "id": "7a0b6294.e887c4",
- "type": "ui_text_input",
- "z": "b73d5eb8.60ef3",
- "name": "duration_bef_cycle",
- "label": "Duration before the cycles (s)",
- "tooltip": "",
- "group": "f41d0ecb.8be06",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": true,
- "mode": "number",
- "delay": 300,
- "topic": "duration_bef_cycle",
- "x": 510,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "a57fea5b.59eb5",
- "type": "ui_toast",
- "z": "91e5fd54.56f58",
- "position": "top right",
- "displayTime": "3",
- "highlight": "",
- "sendall": true,
- "outputs": 0,
- "ok": "OK",
- "cancel": "",
- "raw": false,
- "topic": "",
- "name": "",
- "x": 1220,
- "y": 360,
- "wires": []
- },
- {
- "id": "f7d3d0c4.0203",
- "type": "exec",
- "z": "1b486ba8.f8c41c",
- "command": "sudo date -s",
- "addpay": true,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "",
- "x": 1010,
- "y": 240,
- "wires": [
- [],
- [],
- []
- ]
- },
- {
- "id": "c5fcaba5.184e88",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = new Date();\n//get weekday\nvar weekday = new Array(7);\nweekday[0] = \"Sun\";\nweekday[1] = \"Mon\";\nweekday[2] = \"Tue\";\nweekday[3] = \"Wed\";\nweekday[4] = \"Thu\";\nweekday[5] = \"Fri\";\nweekday[6] = \"Sat\";\nvar w = weekday[d.getUTCDay()];\n//get Month\nvar month = new Array(12);\nmonth[0] = \"Jan\";\nmonth[1] = \"Feb\";\nmonth[2] = \"Mar\";\nmonth[3] = \"Apr\";\nmonth[4] = \"May\";\nmonth[5] = \"Jun\";\nmonth[6] = \"Jul\";\nmonth[7] = \"Aug\";\nmonth[8] = \"Sep\";\nmonth[9] = \"Oct\";\nmonth[10] = \"Nov\";\nmonth[11] = \"Dec\";\nvar n = month[d.getUTCMonth()];\n \n//get day\nvar day = d.getUTCDay()\n\n//get Hours\nvar Hours = d.getUTCHours();\n//get Minutes\nvar Minutes = d.getUTCMinutes();\n//get Seconds\nvar Seconds = d.getUTCSeconds();\n//get FullYear\nvar FullYear = d.getUTCFullYear();\n\n//Thu Aug 09 2012 23:34:04 GMT+0200 (GMT+02:00)\n\n//Thu Aug 9 21:31:26 UTC 2012\n\n//msg.payload = \"Thu Aug 9 21:31:26 UTC 2012\"\n\nmsg.payload = '\"'+w+\" \"+n+\" \"+day+\" \"+Hours+\":\"+Minutes+\":\"+Seconds+\" UTC \"+FullYear+'\"';\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 490,
- "y": 40,
- "wires": [
- [
- "a1c2a5e3.4aea58"
- ]
- ]
- },
- {
- "id": "807d5cce.2bb1e",
- "type": "subflow:1b486ba8.f8c41c",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 280,
- "y": 180,
- "wires": []
- },
- {
- "id": "a1c2a5e3.4aea58",
- "type": "ui_template",
- "z": "1b486ba8.f8c41c",
- "group": "9214d59d.e7b52",
- "name": "",
- "order": 1,
- "width": 0,
- "height": 0,
- "format": "",
- "storeOutMessages": true,
- "fwdInMessages": true,
- "templateScope": "local",
- "x": 640,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "9b1b260f.e4b338",
- "type": "function",
- "z": "ad5a5663.ce893",
- "name": "set object_time",
- "func": "var time = new Date(msg.payload);\n\nvar hour = time.getUTCHours();\nif (hour<10){hour = \"0\"+hour;}\nvar minute = time.getUTCMinutes();\nif (minute<10){minute = \"0\"+minute;}\n\nvar time_UTC = \"\"+hour+minute;\nglobal.set('object_time',time_UTC);\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 804,
- "y": 80,
- "wires": [
- []
- ]
- },
- {
- "id": "86aa9817.45a2e8",
- "type": "function",
- "z": "ad5a5663.ce893",
- "name": "set object_date",
- "func": "var date = new Date(msg.payload);\n\nvar year = date.getUTCFullYear();\nvar month = date.getUTCMonth()+1;\nif (month<10){month = \"0\"+month;}\nvar day = date.getUTCDate();\nif (day<10){day = \"0\"+day;}\n\nvar date_UTC = \"\"+year+month+day;\nglobal.set('object_date',date_UTC);\n\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 804,
- "y": 40,
- "wires": [
- []
- ]
- },
- {
- "id": "546376f8.9d25d8",
- "type": "ui_numeric",
- "z": "1b486ba8.f8c41c",
- "name": "year",
- "label": "Year",
- "tooltip": "",
- "group": "9214d59d.e7b52",
- "order": 2,
- "width": 5,
- "height": 1,
- "wrap": false,
- "passthru": true,
- "topic": "year",
- "format": "{{value}}",
- "min": "2020",
- "max": "2030",
- "step": 1,
- "x": 630,
- "y": 80,
- "wires": [
- [
- "dc685555.af057"
- ]
- ]
- },
- {
- "id": "8a701d46.962ed8",
- "type": "ui_numeric",
- "z": "1b486ba8.f8c41c",
- "name": "month",
- "label": "Month",
- "tooltip": "",
- "group": "9214d59d.e7b52",
- "order": 3,
- "width": 3,
- "height": 1,
- "wrap": false,
- "passthru": true,
- "topic": "month",
- "format": "{{value}}",
- "min": "1",
- "max": "12",
- "step": 1,
- "x": 630,
- "y": 120,
- "wires": [
- [
- "dc685555.af057"
- ]
- ]
- },
- {
- "id": "3e39bc34.b3042c",
- "type": "ui_numeric",
- "z": "1b486ba8.f8c41c",
- "name": "day",
- "label": "Day",
- "tooltip": "",
- "group": "9214d59d.e7b52",
- "order": 4,
- "width": 3,
- "height": 1,
- "wrap": false,
- "passthru": true,
- "topic": "day",
- "format": "{{value}}",
- "min": "1",
- "max": "31",
- "step": 1,
- "x": 630,
- "y": 160,
- "wires": [
- [
- "dc685555.af057"
- ]
- ]
- },
- {
- "id": "6edc1533.cd3ab4",
- "type": "ui_numeric",
- "z": "1b486ba8.f8c41c",
- "name": "hour",
- "label": "Hour",
- "tooltip": "",
- "group": "9214d59d.e7b52",
- "order": 5,
- "width": 3,
- "height": 1,
- "wrap": false,
- "passthru": true,
- "topic": "hour",
- "format": "{{value}}",
- "min": "0",
- "max": "23",
- "step": 1,
- "x": 630,
- "y": 200,
- "wires": [
- [
- "dc685555.af057"
- ]
- ]
- },
- {
- "id": "1ba0f9e6.1be54e",
- "type": "ui_numeric",
- "z": "1b486ba8.f8c41c",
- "name": "minute",
- "label": "Minute",
- "tooltip": "",
- "group": "9214d59d.e7b52",
- "order": 6,
- "width": 3,
- "height": 1,
- "wrap": false,
- "passthru": true,
- "topic": "minute",
- "format": "{{value}}",
- "min": "0",
- "max": "59",
- "step": 1,
- "x": 630,
- "y": 240,
- "wires": [
- [
- "dc685555.af057"
- ]
- ]
- },
- {
- "id": "fd050fce.2ffe28",
- "type": "ui_numeric",
- "z": "1b486ba8.f8c41c",
- "name": "second",
- "label": "Second",
- "tooltip": "",
- "group": "9214d59d.e7b52",
- "order": 7,
- "width": 3,
- "height": 1,
- "wrap": false,
- "passthru": true,
- "topic": "second",
- "format": "{{value}}",
- "min": "0",
- "max": "59",
- "step": 1,
- "x": 640,
- "y": 280,
- "wires": [
- [
- "dc685555.af057"
- ]
- ]
- },
- {
- "id": "e1cc68bb.7b045",
- "type": "interval",
- "z": "1b486ba8.f8c41c",
- "name": "interval",
- "interval": "1",
- "onstart": false,
- "msg": "ping",
- "showstatus": true,
- "unit": "seconds",
- "statusformat": "YYYY-MM-D HH:mm:ss",
- "x": 310,
- "y": 40,
- "wires": [
- [
- "c5fcaba5.184e88"
- ]
- ]
- },
- {
- "id": "23f1828c.afae3e",
- "type": "ui_button",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "group": "9214d59d.e7b52",
- "order": 8,
- "width": 4,
- "height": 1,
- "passthru": false,
- "label": "Update",
- "tooltip": "",
- "color": "black",
- "bgcolor": "white",
- "icon": "",
- "payload": "",
- "payloadType": "str",
- "topic": "",
- "x": 640,
- "y": 320,
- "wires": [
- [
- "cb4c9210.01c958"
- ]
- ]
- },
- {
- "id": "cb4c9210.01c958",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "update datetime",
- "func": "var FullYear= global.get(\"year\");\nvar Month= global.get(\"month\");\nvar day= global.get(\"day\");\nvar Hours= global.get(\"hour\");\nvar Minutes= global.get(\"minute\");\nvar Seconds= global.get(\"second\");\n\nmsg.payload = new Date();\n//get Month\nvar month = new Array(12);\nmonth[1] = \"Jan\";\nmonth[2] = \"Feb\";\nmonth[3] = \"Mar\";\nmonth[4] = \"Apr\";\nmonth[5] = \"May\";\nmonth[6] = \"Jun\";\nmonth[7] = \"Jul\";\nmonth[8] = \"Aug\";\nmonth[9] = \"Sep\";\nmonth[10] = \"Oct\";\nmonth[11] = \"Nov\";\nmonth[12] = \"Dec\";\nvar n = month[Month];\n \nmsg.payload = '\"'+day+\" \"+n+\" \"+FullYear+\" \"+Hours+\":\"+Minutes+\":\"+Seconds+'\"';\n\n\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 800,
- "y": 320,
- "wires": [
- [
- "7c1c8abf.4b984c",
- "f7d3d0c4.0203"
- ]
- ]
- },
- {
- "id": "dc685555.af057",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "set global",
- "func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 840,
- "y": 60,
- "wires": [
- []
- ]
- },
- {
- "id": "7c1c8abf.4b984c",
- "type": "debug",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "active": true,
- "tosidebar": true,
- "console": false,
- "tostatus": false,
- "complete": "false",
- "x": 1010,
- "y": 300,
- "wires": []
- },
- {
- "id": "92842b63.e0d7b8",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = msg.payload;\n\nvar val = d.getUTCFullYear();\n\nmsg.payload = val;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 490,
- "y": 80,
- "wires": [
- [
- "546376f8.9d25d8"
- ]
- ]
- },
- {
- "id": "48033b32.2bca94",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = new Date();\nmsg.payload = d\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 310,
- "y": 80,
- "wires": [
- [
- "92842b63.e0d7b8",
- "94057891.b1a658",
- "aab6990b.1cf718",
- "42b00a98.b36bb4",
- "e2370ad.c8e7ff8",
- "9c43dfe1.eb6178"
- ]
- ]
- },
- {
- "id": "94057891.b1a658",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = msg.payload;\n\nvar val = d.getUTCMonth();\n\nmsg.payload = val+1;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 490,
- "y": 120,
- "wires": [
- [
- "8a701d46.962ed8"
- ]
- ]
- },
- {
- "id": "aab6990b.1cf718",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = msg.payload;\n\nvar val = d.getUTCDay();\n\nmsg.payload = val;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 490,
- "y": 160,
- "wires": [
- [
- "3e39bc34.b3042c"
- ]
- ]
- },
- {
- "id": "42b00a98.b36bb4",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = msg.payload;\n\nvar val = d.getUTCHours();\n\nmsg.payload = val;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 490,
- "y": 200,
- "wires": [
- [
- "6edc1533.cd3ab4"
- ]
- ]
- },
- {
- "id": "e2370ad.c8e7ff8",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = msg.payload;\n\nvar val = d.getUTCMinutes();\n\nmsg.payload = val;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 490,
- "y": 240,
- "wires": [
- [
- "1ba0f9e6.1be54e"
- ]
- ]
- },
- {
- "id": "9c43dfe1.eb6178",
- "type": "function",
- "z": "1b486ba8.f8c41c",
- "name": "",
- "func": "d = msg.payload;\n\nvar val = d.getUTCSeconds();\n\nmsg.payload = val;\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 490,
- "y": 280,
- "wires": [
- [
- "fd050fce.2ffe28"
- ]
- ]
- },
- {
- "id": "ca843dd8.d1c62",
- "type": "exec",
- "z": "66c23d37.f72cdc",
- "command": "python3.7 /home/pi/PlanktonScope/script/mqtt_pump_focus_image_segment_strem.py",
- "addpay": false,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "",
- "x": 520,
- "y": 100,
- "wires": [
- [],
- [
- "a49ed5a6.5b73b8"
- ],
- []
- ]
- },
- {
- "id": "1af32c3e.856864",
- "type": "exec",
- "z": "66c23d37.f72cdc",
- "command": "ps -ax | grep \"python3.7 /home/pi/PlanktonScope/script/mqtt_pump_focus_image_segment_strem.py\"| head -1 | awk -F \" \" '{print$1}' ",
- "addpay": false,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "",
- "x": 660,
- "y": 160,
- "wires": [
- [
- "ddabe48c.369c68"
- ],
- [],
- []
- ]
- },
- {
- "id": "ddabe48c.369c68",
- "type": "exec",
- "z": "66c23d37.f72cdc",
- "command": "kill",
- "addpay": true,
- "append": "",
- "useSpawn": "false",
- "timer": "",
- "oldrc": false,
- "name": "",
- "x": 1210,
- "y": 120,
- "wires": [
- [
- "6382060e.460ab8"
- ],
- [
- "6382060e.460ab8"
- ],
- [
- "6382060e.460ab8"
- ]
- ]
- },
- {
- "id": "fcaca139.5ed04",
- "type": "ui_button",
- "z": "66c23d37.f72cdc",
- "name": "",
- "group": "9214d59d.e7b52",
- "order": 9,
- "width": 12,
- "height": 1,
- "passthru": false,
- "label": "Kill MQTT",
- "tooltip": "",
- "color": "",
- "bgcolor": "",
- "icon": "",
- "payload": "",
- "payloadType": "str",
- "topic": "",
- "x": 80,
- "y": 160,
- "wires": [
- [
- "1af32c3e.856864"
- ]
- ]
- },
- {
- "id": "9d663990.fd2908",
- "type": "ui_button",
- "z": "66c23d37.f72cdc",
- "name": "",
- "group": "9214d59d.e7b52",
- "order": 10,
- "width": 12,
- "height": 1,
- "passthru": false,
- "label": "Restart MQTT",
- "tooltip": "",
- "color": "",
- "bgcolor": "",
- "icon": "",
- "payload": "",
- "payloadType": "str",
- "topic": "",
- "x": 100,
- "y": 100,
- "wires": [
- [
- "ca843dd8.d1c62"
- ]
- ]
- },
- {
- "id": "a49ed5a6.5b73b8",
- "type": "ui_toast",
- "z": "66c23d37.f72cdc",
- "position": "top right",
- "displayTime": "3",
- "highlight": "",
- "sendall": true,
- "outputs": 0,
- "ok": "OK",
- "cancel": "",
- "raw": false,
- "topic": "",
- "name": "",
- "x": 920,
- "y": 100,
- "wires": []
- },
- {
- "id": "fda01242.9576a8",
- "type": "subflow:66c23d37.f72cdc",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 270,
- "y": 220,
- "wires": []
- },
- {
- "id": "bbb7cb31.15121",
- "type": "debug",
- "z": "ad5a5663.ce893",
- "name": "",
- "active": true,
- "tosidebar": true,
- "console": false,
- "tostatus": false,
- "complete": "true",
- "targetType": "full",
- "x": 280,
- "y": 360,
- "wires": []
- },
- {
- "id": "6382060e.460ab8",
- "type": "debug",
- "z": "66c23d37.f72cdc",
- "name": "",
- "active": true,
- "tosidebar": true,
- "console": false,
- "tostatus": false,
- "complete": "false",
- "x": 1380,
- "y": 120,
- "wires": []
- },
- {
- "id": "b23ae409.085ad8",
- "type": "ui_button",
- "z": "8d959937.18735",
- "name": "",
- "group": "d170ac9c.3b4828",
- "order": 1,
- "width": 0,
- "height": 0,
- "passthru": false,
- "label": "Start Acquisition",
- "tooltip": "",
- "color": "",
- "bgcolor": "",
- "icon": "",
- "payload": "",
- "payloadType": "str",
- "topic": "actuator/image",
- "x": 200,
- "y": 100,
- "wires": [
- [
- "715c6be9.55822c"
- ]
- ]
- },
- {
- "id": "715c6be9.55822c",
- "type": "function",
- "z": "8d959937.18735",
- "name": "image.js",
- "func": "state = global.get(\"state\");\nglobal.set('img_counter',0)\nglobal.set('obj_counter',0)\nif (state == null){state=\"free\"}\n\nvar duration_bef_cycle= global.get(\"duration_bef_cycle\");\nvar duration_flush= global.get(\"duration_flush\");\nvar nb_img= global.get(\"nb_img\");\nvar duration_bef_seq= global.get(\"duration_bef_seq\");\nvar duration_bef_img= global.get(\"duration_bef_img\");\nvar duration_between= global.get(\"duration_between\");\n\nif (duration_bef_cycle === undefined || duration_bef_cycle === \"\" || duration_bef_cycle === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration before the cycles\";\n \n}else if (duration_flush === undefined || duration_flush === \"\" || duration_flush === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration of the flushing\";\n \n}else if (nb_img === undefined || nb_img === \"\" || nb_img === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Directory to store the images\";\n \n}else if (duration_bef_seq === undefined || duration_bef_seq === \"\" || duration_bef_seq === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration before the sequence\";\n \n}else if (duration_bef_img === undefined || duration_bef_img === \"\" || duration_bef_img === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration before an image\";\n \n}else if (duration_between === undefined || duration_between === \"\" || duration_between === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration between sequence\";\n \n}else {\n nb_img=nb_img-1\n msg.payload=duration_bef_cycle+' '+duration_flush+' '+nb_img+' '+duration_bef_seq+' '+duration_bef_img+' '+duration_between;\n}\nreturn msg;",
- "outputs": 1,
- "noerr": 0,
- "x": 360,
- "y": 100,
- "wires": [
- [
- "bda62ebe.dd2e4"
- ]
- ],
- "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
- },
- {
- "id": "bda62ebe.dd2e4",
- "type": "switch",
- "z": "8d959937.18735",
- "name": "",
- "property": "topic",
- "propertyType": "msg",
- "rules": [
- {
- "t": "eq",
- "v": "actuator/image",
- "vt": "str"
- },
- {
- "t": "eq",
- "v": "Missing entry :",
- "vt": "str"
- }
- ],
- "checkall": "true",
- "repair": false,
- "outputs": 2,
- "x": 510,
- "y": 100,
- "wires": [
- [
- "366697a.e8f6068"
- ],
- [
- "e2049db5.46682"
- ]
- ]
- },
- {
- "id": "e2049db5.46682",
- "type": "ui_toast",
- "z": "8d959937.18735",
- "position": "dialog",
- "displayTime": "3",
- "highlight": "",
- "sendall": true,
- "outputs": 1,
- "ok": "OK",
- "cancel": "",
- "raw": false,
- "topic": "",
- "name": "",
- "x": 690,
- "y": 120,
- "wires": [
- []
- ]
- },
- {
- "id": "366697a.e8f6068",
- "type": "mqtt out",
- "z": "8d959937.18735",
- "name": "",
- "topic": "",
- "qos": "",
- "retain": "",
- "broker": "cb2f36fe.1c7038",
- "x": 670,
- "y": 80,
- "wires": []
- },
- {
- "id": "3a85a060.ad2aa",
- "type": "ui_button",
- "z": "8d959937.18735",
- "name": "Stop Acquisition",
- "group": "d170ac9c.3b4828",
- "order": 2,
- "width": 0,
- "height": 0,
- "passthru": true,
- "label": "STOP ACQUISITION",
- "tooltip": "",
- "color": "",
- "bgcolor": "#AD1625",
- "icon": "",
- "payload": "off",
- "payloadType": "str",
- "topic": "actuator/wait",
- "x": 200,
- "y": 140,
- "wires": [
- [
- "f59d51da.c3b078"
- ]
- ]
- },
- {
- "id": "f59d51da.c3b078",
- "type": "mqtt out",
- "z": "8d959937.18735",
- "name": "",
- "topic": "",
- "qos": "",
- "retain": "",
- "broker": "cb2f36fe.1c7038",
- "x": 350,
- "y": 140,
- "wires": []
- },
- {
- "id": "8ade1ac1.5c3408",
- "type": "ui_switch",
- "z": "8d959937.18735",
- "name": "Segmentation",
- "label": "Segmentation",
- "tooltip": "",
- "group": "d170ac9c.3b4828",
- "order": 3,
- "width": 0,
- "height": 0,
- "passthru": false,
- "decouple": "false",
- "topic": "actuator/segmentation_state",
- "style": "",
- "onvalue": "true",
- "onvalueType": "str",
- "onicon": "",
- "oncolor": "",
- "offvalue": "false",
- "offvalueType": "str",
- "officon": "",
- "offcolor": "",
- "x": 200,
- "y": 180,
- "wires": [
- [
- "7751b219.9a3e1c"
- ]
- ]
- },
- {
- "id": "7751b219.9a3e1c",
- "type": "mqtt out",
- "z": "8d959937.18735",
- "name": "",
- "topic": "",
- "qos": "",
- "retain": "",
- "broker": "cb2f36fe.1c7038",
- "x": 350,
- "y": 180,
- "wires": []
- },
- {
- "id": "2a677ff0.62e0f",
- "type": "subflow:8d959937.18735",
- "z": "259c8713.b50e28",
- "name": "",
- "env": [],
- "x": 750,
- "y": 420,
- "wires": []
- }
-]