segmenter: replace adaptative threshold by simple threshold in pipe
(cherry picked from commit f6482fcca9abc0f7e027890a57175559a179d060)
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@ -48,6 +48,7 @@ import planktoscope.segmenter.ecotaxa
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import skimage.util
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import skimage.transform
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import skimage.measure
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import skimage.exposure
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import cv2
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import scipy.stats
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import numpy as np
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@ -229,7 +230,8 @@ class SegmenterProcess(multiprocessing.Process):
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logger.info("Starting the mask creation")
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pipeline = [
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"adaptative_threshold",
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# "adaptative_threshold",
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"simple_threshold",
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"remove_previous_mask",
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"erode",
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"dilate",
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@ -700,7 +702,9 @@ class SegmenterProcess(multiprocessing.Process):
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else:
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logger.info("There are no objects to export")
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else:
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logger.info("We are not creating the ecotaxa output archive for this folder")
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logger.info(
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"We are not creating the ecotaxa output archive for this folder"
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)
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# cleanup
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# we're done free some mem
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