segmenter: replace adaptative threshold by simple threshold in pipe

(cherry picked from commit f6482fcca9abc0f7e027890a57175559a179d060)
This commit is contained in:
Romain Bazile 2021-06-02 18:35:00 +02:00 committed by Romain Bazile
parent 5c005ed619
commit e18d9835ad

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@ -48,6 +48,7 @@ import planktoscope.segmenter.ecotaxa
import skimage.util
import skimage.transform
import skimage.measure
import skimage.exposure
import cv2
import scipy.stats
import numpy as np
@ -229,7 +230,8 @@ class SegmenterProcess(multiprocessing.Process):
logger.info("Starting the mask creation")
pipeline = [
"adaptative_threshold",
# "adaptative_threshold",
"simple_threshold",
"remove_previous_mask",
"erode",
"dilate",
@ -700,7 +702,9 @@ class SegmenterProcess(multiprocessing.Process):
else:
logger.info("There are no objects to export")
else:
logger.info("We are not creating the ecotaxa output archive for this folder")
logger.info(
"We are not creating the ecotaxa output archive for this folder"
)
# cleanup
# we're done free some mem