From e7ea63a43af3907e4204bb9e2c13b1172e631109 Mon Sep 17 00:00:00 2001
From: Romain Bazile <gromain.baz@gmail.com>
Date: Tue, 6 Oct 2020 12:24:08 +0200
Subject: [PATCH] Scripts README

---
 scripts/README.md | 66 +++++++----------------------------------------
 1 file changed, 10 insertions(+), 56 deletions(-)

diff --git a/scripts/README.md b/scripts/README.md
index 609d679..af46d2a 100644
--- a/scripts/README.md
+++ b/scripts/README.md
@@ -1,60 +1,14 @@
-_________________
-### Focusing
-##### focus.py `nb_step` `orientation`
+# Python scripts of the PlanktoScope
 
-- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)
-- `orientation` : **string** - orientation of the focus either `up` or `down`
+This directory contains the various scripts needed for the PlanktoScope to run properly.
 
-Example:
+You should start your exploration with the file `main.py` as this is the file started by Node-Red.
 
-    python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up
+The `planktoscope` directory contains the various modules loaded at runtime:
 
-_________________
-### Pumping
-##### pump.py `volume` `flowrate` `action`
-
-- `volume` : **integer**
-- `flowrate` : **float**
-- `action` : **string**
-
-Example:
-
-    python3.7 $HOME/PlanktonScope/scripts/pump.py 1 10 suck
-
-_________________
-### Image
-##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`
-
-- `in_path` : **string** - directory to store acquisitions **the path has to end with /**
-- `sample_project` : **string**
-- `sample_id` : **string**
-- `acq_id` : **string**
-- `volume` : **integer**
-- `flowrate` : **float**
-
-Example:
-
-    python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2
-
-
-_________________
-
-### Light
-##### light.py `state`
-
-- `state` : **string** - `on` OR `off`
-
-Example:
-
-    python3.7 $HOME/PlanktonScope/scripts/light.py on
-
-
-_________________
-### Fan
-##### fan.py `state`
-
-- `state` : **string** - `on` OR `off`
-
-Example:
-
-    python3.7 $HOME/PlanktonScope/scripts/fan.py on
+- `imager_state_machine.py` is the state machine class of the imager process.
+- `imager.py` is the process that runs the camera and the streaming server for the liveview.
+- `light.py` manages the state of the light messages displayed by the Yahboom HAT.
+- `mqtt.py` is the class managing the mqtt dialogue with Mosquitto and Node-Red.
+- `segmenter.py` is the process that controls the segmentation.
+- `stepper.py` is the process that manages the stepper motors and their movements.