From ec9f7547cc65b2ab77c3580ab089be45540a81ce Mon Sep 17 00:00:00 2001 From: tpollina Date: Thu, 16 Jan 2020 15:47:42 +0100 Subject: [PATCH] Update and rename MorphoCut_Installation.txt to MorphoCut_Installation_and_usage_error.txt --- ...orphoCut_Installation_and_usage_error.txt} | 82 +++++++++++++++++++ 1 file changed, 82 insertions(+) rename docs/{MorphoCut_Installation.txt => MorphoCut_Installation_and_usage_error.txt} (76%) diff --git a/docs/MorphoCut_Installation.txt b/docs/MorphoCut_Installation_and_usage_error.txt similarity index 76% rename from docs/MorphoCut_Installation.txt rename to docs/MorphoCut_Installation_and_usage_error.txt index 055c190..dfef00b 100644 --- a/docs/MorphoCut_Installation.txt +++ b/docs/MorphoCut_Installation_and_usage_error.txt @@ -1,3 +1,8 @@ +######################################################### +######################################################### +INSTALLATION PROCESS +######################################################### +######################################################### ######################################################### Installation of MorphoCut development version: @@ -221,3 +226,80 @@ Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from Installing collected packages: morphocut Successfully installed morphocut-0.1.1 +######################################################### +######################################################### +USAGE ERROR +######################################################### +######################################################### + +Processing images under /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15... +0it [00:00, ?it/s] +0it [00:00, ?it/s]Found 94 files in /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15. + +Object 35_41_180124_84: : 85it [00:17, 5.95it/s] +Frame 35_41_180124: : 1it [00:17, 17.03s/it] +Object 35_41_763395_168: : 169it [00:24, 47.97it/s] +Frame 35_41_763395: : 2it [00:24, 14.11s/it] +Object 35_42_339153_245: : 245it [00:31, 44.73it/s] +Frame 35_42_339153: : 3it [00:31, 11.93s/it] +Object 35_42_899894_320: : 319it [00:38, 42.28it/s] +Frame 35_42_899894: : 4it [00:38, 10.44s/it] +Object 35_43_467613_394: : 394it [00:45, 44.59it/s] +Frame 35_43_467613: : 5it [00:44, 9.36s/it] +Object 35_44_040639_465: : 466it [00:56, 32.28it/s] +Frame 35_44_040639: : 6it [00:59, 9.95s/it] +Object 35_44_040639_465: : 466it [00:59, 7.78it/s] +Traceback (most recent call last): + File "/home/pi/Downloads/Morphocut.py", line 115, in + p.run() + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 748, in run + for _ in self.transform_stream(): + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream + for obj in progress: + File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__ + for obj in iterable: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/contrib/ecotaxa.py", line 111, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 184, in transform_stream + for i, obj in enumerate(stream, start=self.start): + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 142, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream + for obj in progress: + File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__ + for obj in iterable: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream + for obj in stream: + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 492, in transform_stream + result = self.transform(*parameters) # pylint: disable=no-member + File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 78, in transform + image, in_range=in_range, out_range=self.out_range + File "/home/pi/.local/lib/python3.7/site-packages/skimage/exposure/exposure.py", line 352, in rescale_intensity + image = (image - imin) / float(imax - imin) +MemoryError