double all i2c calls and change nginx config in update script

flows/main.json

@@ -1427,7 +1427,7 @@
         "type": "python3-function",
         "z": "1371dec5.76e671",
         "name": "fan control",
-        "func": "#!/usr/bin/python\nimport smbus\n\nstate = msg[\"payload\"]\n\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n\nif state == \"off\":\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\nif state == \"on\":\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n",
+        "func": "#!/usr/bin/python\nimport smbus\n\nstate = msg[\"payload\"]\n\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n\n# command happens twice, for reasons\nif state == \"off\":\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\nif state == \"on\":\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n    bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n",
         "outputs": 1,
         "x": 1110,
         "y": 40,

scripts/bash/update.sh

@@ -25,15 +25,15 @@ function special(){
         sudo rm /etc/nginx/sites-enabled/img.conf
         sudo nginx -t && sudo systemctl reload nginx
     fi
-    if [[ -f "/etc/nginx/sites-available/gallery.conf" ]]; then
+    if ! [[ -f "/etc/nginx/sites-enabled/gallery.conf" ]]; then
-        ${log} "Updating the old nginx config"
-        sudo rm /etc/nginx/sites-available/gallery.conf
-        sudo rm /etc/nginx/sites-enabled/gallery.conf
-    fi
-    if ! [[ -f "/etc/nginx/sites-available/gallery.conf" ]]; then
         ${log} "Nginx config is not installed, doing that now"
-        sudo cp /home/pi/PlanktonScope/scripts/gallery/gallery.conf /etc/nginx/sites-available/gallery.conf
+        sudo ln -s /home/pi/PlanktonScope/scripts/gallery/gallery.conf /etc/nginx/sites-enabled/gallery.conf
-        sudo ln -s /etc/nginx/sites-available/gallery.conf /etc/nginx/sites-enabled/gallery.conf
+        sudo nginx -t && sudo systemctl reload nginx
+    fi
+    if [[ -f "/etc/nginx/sites-available/gallery.conf" ]]; then
+        ${log} "Nginx config is installed, changing the links now"
+        sudo rm /etc/nginx/sites-enabled/gallery.conf /etc/nginx/sites-available/gallery.conf
+        sudo ln -s /home/pi/PlanktonScope/scripts/gallery/gallery.conf /etc/nginx/sites-enabled/gallery.conf
         sudo nginx -t && sudo systemctl reload nginx
     fi
 }
@@ -44,10 +44,10 @@ cd /home/pi/PlanktonScope || { echo "/home/pi/PlanktonScope does not exist"; exi
 # TODO We need to add here a way to load the latest version of this script and execute it again
 remote=$(git ls-remote -h origin master | awk '{print $1}')
 local=$(git rev-parse HEAD)
-${log} "Local : $local - Remote: $remote"
 if [[ "$local" == "$remote" ]]; then
     ${log} "nothing to do!"
 else
+    ${log} "Local and Remote are different, we have to update!"
     git fetch
     UPDATE=$(git diff --numstat origin/master scripts/bash/update.sh | awk '/update.sh/ {print $NF}')
     if [[ -n "${UPDATE}" ]]; then

scripts/planktoscope/light.py

@@ -8,13 +8,12 @@
 # Logger library compatible with multiprocessing
 from loguru import logger
 
+import subprocess  # nosec
 
 # Library to send command over I2C for the light module on the fan
 try:
     import smbus2 as smbus
 except ModuleNotFoundError:  # We need this to install the library on machine that do not have the module yet
-    import subprocess  # nosec
-
     subprocess.run("pip3 install smbus2".split())  # nosec
     import smbus2 as smbus
 
@@ -55,6 +54,11 @@ class EffectColor(enum.IntEnum):
     White = 6
 
 
+def i2c_update():
+    # Update the I2C Bus in order to really update the LEDs new values
+    subprocess.Popen("i2cdetect -y 1".split(), stdout=subprocess.PIPE)  # nosec
+
+
 ################################################################################
 # LEDs functions
 ################################################################################
@@ -62,12 +66,16 @@ def setRGB(R, G, B):
     """Update all LED at the same time"""
     try:
         with smbus.SMBus(1) as bus:
+            bus.write_byte_data(DEVICE_ADDRESS, Register.led_select, 0xFF)
             bus.write_byte_data(
                 DEVICE_ADDRESS, Register.led_select, 0xFF
             )  # 0xFF write to all LEDs, 0x01/0x02/0x03 to choose first, second or third LED
             bus.write_byte_data(DEVICE_ADDRESS, Register.red, R & 0xFF)
             bus.write_byte_data(DEVICE_ADDRESS, Register.green, G & 0xFF)
             bus.write_byte_data(DEVICE_ADDRESS, Register.blue, B & 0xFF)
+            bus.write_byte_data(DEVICE_ADDRESS, Register.red, R & 0xFF)
+            bus.write_byte_data(DEVICE_ADDRESS, Register.green, G & 0xFF)
+            bus.write_byte_data(DEVICE_ADDRESS, Register.blue, B & 0xFF)
     except Exception as e:
         logger.exception(f"An Exception has occured in the light library at {e}")
 
@@ -77,6 +85,7 @@ def setRGBOff():
     try:
         with smbus.SMBus(1) as bus:
             bus.write_byte_data(DEVICE_ADDRESS, Register.rgb_off, 0x00)
+            bus.write_byte_data(DEVICE_ADDRESS, Register.rgb_off, 0x00)
     except Exception as e:
         logger.exception(f"An Exception has occured in the light library at {e}")
 
@@ -121,50 +130,71 @@ def setRGBColor(bus, color):
 
 def ready():
     with smbus.SMBus(1) as bus:
+        setRGBColor(bus, EffectColor.Green)
         setRGBColor(bus, EffectColor.Green)
         setRGBSpeed(bus, 1)
+        setRGBSpeed(bus, 1)
+        setRGBEffect(bus, Effect.Breathing)
         setRGBEffect(bus, Effect.Breathing)
 
 
 def error():
     with smbus.SMBus(1) as bus:
+        setRGBColor(bus, EffectColor.Red)
         setRGBColor(bus, EffectColor.Red)
         setRGBSpeed(bus, 3)
+        setRGBSpeed(bus, 3)
+        setRGBEffect(bus, Effect.Water)
         setRGBEffect(bus, Effect.Water)
 
 
 def interrupted():
     with smbus.SMBus(1) as bus:
+        setRGBColor(bus, EffectColor.Yellow)
         setRGBColor(bus, EffectColor.Yellow)
         setRGBSpeed(bus, 3)
+        setRGBSpeed(bus, 3)
+        setRGBEffect(bus, Effect.Water)
         setRGBEffect(bus, Effect.Water)
 
 
 def pumping():
     with smbus.SMBus(1) as bus:
+        setRGBColor(bus, EffectColor.Blue)
         setRGBColor(bus, EffectColor.Blue)
         setRGBSpeed(bus, 3)
+        setRGBSpeed(bus, 3)
+        setRGBEffect(bus, Effect.Water)
         setRGBEffect(bus, Effect.Water)
 
 
 def focusing():
     with smbus.SMBus(1) as bus:
+        setRGBColor(bus, EffectColor.Purple)
         setRGBColor(bus, EffectColor.Purple)
         setRGBSpeed(bus, 3)
+        setRGBSpeed(bus, 3)
+        setRGBEffect(bus, Effect.Water)
         setRGBEffect(bus, Effect.Water)
 
 
 def imaging():
     with smbus.SMBus(1) as bus:
+        setRGBColor(bus, EffectColor.White)
         setRGBColor(bus, EffectColor.White)
         setRGBSpeed(bus, 1)
+        setRGBSpeed(bus, 1)
+        setRGBEffect(bus, Effect.Breathing)
         setRGBEffect(bus, Effect.Breathing)
 
 
 def segmenting():
     with smbus.SMBus(1) as bus:
+        setRGBColor(bus, EffectColor.Purple)
         setRGBColor(bus, EffectColor.Purple)
         setRGBSpeed(bus, 1)
+        setRGBSpeed(bus, 1)
+        setRGBEffect(bus, Effect.Breathing)
         setRGBEffect(bus, Effect.Breathing)
 
 
@@ -175,22 +205,48 @@ if __name__ == "__main__":
 
     print("ready")
     ready()
-    time.sleep(10)
+    time.sleep(5)
     print("error")
     error()
-    time.sleep(10)
+    time.sleep(5)
     print("pumping")
     pumping()
-    time.sleep(10)
+    time.sleep(5)
     print("focusing")
     focusing()
-    time.sleep(10)
+    time.sleep(5)
     print("imaging")
     imaging()
-    time.sleep(10)
+    time.sleep(5)
     print("segmenting")
     segmenting()
-    time.sleep(10)
+    time.sleep(5)
+    print("with i2c_update now!")
+    print("ready")
+    ready()
+    i2c_update()
+    time.sleep(5)
+    print("error")
+    error()
+    i2c_update()
+    time.sleep(5)
+    print("pumping")
+    pumping()
+    i2c_update()
+    time.sleep(5)
+    print("focusing")
+    focusing()
+    i2c_update()
+    time.sleep(5)
+    print("imaging")
+    imaging()
+    i2c_update()
+    time.sleep(5)
+    print("segmenting")
+    segmenting()
+    i2c_update()
+    time.sleep(5)
+
     with smbus.SMBus(1) as bus:
         setRGBSpeed(bus, 3)
     for effect in Effect: