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"order": 3, + "width": 3, + "height": 1, + "passthru": true, + "decouple": "false", + "topic": "", + "style": "", + "onvalue": "on", + "onvalueType": "str", + "onicon": "", + "oncolor": "", + "offvalue": "off", + "offvalueType": "str", + "officon": "", + "offcolor": "", + "x": 1040, + "y": 80, + "wires": [ + [ + "2549f778.4eb828" + ] + ] + }, + { + "id": "2549f778.4eb828", + "type": "python3-function", + "z": "1371dec5.76e671", + "name": "fan.py", + "func": "#!/usr/bin/python\nimport smbus\nimport sys\n\nstate = msg[\"payload\"]\n\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n\nif state == \"off\":\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\nif state == \"on\":\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)", + "outputs": 1, + "x": 1190, + "y": 80, + "wires": [ + [] + ] + }, + { + "id": "a113b518.830008", + "type": "ui_button", + "z": "1371dec5.76e671", + "name": "", + "group": "3ca00bf9.e5cac4", + "order": 4, + "width": 7, + "height": 1, + "passthru": false, + "label": "Reboot", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "", + "payload": "off", + "payloadType": "str", + "topic": "reboot", + "x": 720, + "y": 320, + "wires": [ + [ + "ee57d11c.ed1dd", + "d9234d01.e630d" + ] + ] + }, + { + "id": "d9a924bc.0ca078", + "type": "exec", + "z": "1371dec5.76e671", + "command": "sudo", + "addpay": true, + "append": "", + "useSpawn": "false", + "timer": "2", + "oldrc": false, + "name": "cmd", + "x": 1030, + "y": 320, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "51145654.0ce2d8", + "type": "python3-function", + "z": "1371dec5.76e671", + "name": "light.py", + "func": "import RPi.GPIO as GPIO\n\nGPIO.setmode(GPIO.BCM)\nGPIO.setwarnings(False)\nGPIO.setup(21,GPIO.OUT)\n\nstate = msg[\"payload\"]\n\n \nif state == \"on\":\n GPIO.output(21,GPIO.HIGH)\nif state == \"off\":\n GPIO.output(21,GPIO.LOW)", + "outputs": 1, + "x": 1200, + "y": 140, + "wires": [ + [] + ] + }, + { + "id": "552d8bbb.cc4ca4", + "type": "ui_button", + "z": "1371dec5.76e671", + "name": "", + "group": "3ca00bf9.e5cac4", + "order": 5, + "width": 7, + "height": 1, + "passthru": false, + "label": "Shutdown", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "", + "payload": "off", + "payloadType": "str", + "topic": "shutdown", + "x": 720, + "y": 380, + "wires": [ + [ + "ee57d11c.ed1dd", + "d9234d01.e630d" + ] + ] + }, + { + "id": "3517d063.27073", + "type": "link in", + "z": "1371dec5.76e671", + "name": "", + "links": [ + "ec8da7a8.0eb558", + "d9234d01.e630d" + ], + "x": 895, + "y": 140, + "wires": [ + [ + "96bbe41d.ee7928", + "8485d05.444903" + ] + ] + }, + { + "id": "ee57d11c.ed1dd", + "type": "python3-function", + "z": "1371dec5.76e671", + "name": "action", + "func": "#!/usr/bin/python\nimport smbus\nimport time\nbus = smbus.SMBus(1)\ntime.sleep(1)\n#turn off fan RGB\nbus.write_byte_data(0x0d, 0x07, 0x00)\nbus.write_byte_data(0x0d, 0x07, 0x00)\n\nmsg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg", + "outputs": 1, + "x": 870, + "y": 340, + "wires": [ + [ + "b7ab1ada.1f4158", + "d9a924bc.0ca078" + ] + ] + }, + { + "id": "b7ab1ada.1f4158", + "type": "exec", + "z": "1371dec5.76e671", + "command": "i2cdetect -y 1", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "1", + "oldrc": false, + "name": "i2c update", + "x": 1050, + "y": 380, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "d9234d01.e630d", + "type": "link out", + "z": "1371dec5.76e671", + "name": "", + "links": [ + "3517d063.27073" + ], + "x": 835, + "y": 280, + "wires": [] + }, + { + "id": "bc503fa5.f46dd", + "type": "switch", + "z": "1371dec5.76e671", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "gt", + "v": "45", + "vt": "num" + }, + { + "t": "lte", + "v": "38", + "vt": "num" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 670, + "y": 80, + "wires": [ + [ + "a25d6486.e1ce28" + ], + [ + "5d4f3e71.1bad4" + ] + ] + }, + { + "id": "5d4f3e71.1bad4", + "type": "change", + "z": "1371dec5.76e671", + "name": "", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "off", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 840, + "y": 100, + "wires": [ + [ + "8485d05.444903" + ] + ] + }, + { + "id": "a25d6486.e1ce28", + "type": "change", + "z": "1371dec5.76e671", + "name": "", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "on", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 840, + "y": 60, + "wires": [ + [ + "8485d05.444903" + ] + ] + }, + { + "id": "37507791.4d5508", + "type": "http request", + "z": "1371dec5.76e671", + "name": "toggle timelapse", + "method": "GET", + "ret": "txt", + "paytoqs": false, + "url": "http://127.0.0.1/html/cmd_pipe.php?cmd={{{payload}}}", + "tls": "", + "persist": false, + "proxy": "", + "authType": "", + "x": 240, + "y": 780, + "wires": [ + [] + ] + }, + { + "id": "b9ff73e.19bd49", + "type": "ui_switch", + "z": "1371dec5.76e671", + "d": true, + "name": "timelapse", + "label": "toggle acquisition", + "tooltip": "", + "group": "1be83144.4fe4bf", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "decouple": "false", + "topic": "toggle", + "style": "", + "onvalue": "tl 1", + "onvalueType": "str", + "onicon": "", + "oncolor": "", + "offvalue": "tl 0", + "offvalueType": "str", + "officon": "", + "offcolor": "", + "x": 80, + "y": 660, + "wires": [ + [ + "37507791.4d5508", + "df47f1bb.1b0bf" + ] + ] + }, + { + "id": "9a52e6b.cbbc118", + "type": "exec", + "z": "1371dec5.76e671", + "command": "ls -l /var/www/html/media | grep \"th\" | tail -1 | awk -F \" \" '{print $9}' | tr -d \"\\n\"", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "get thumbail name", + "x": 770, + "y": 720, + "wires": [ + [ + "ca6bfbdf.4a71e8" + ], + [], + [] + ] + }, + { + "id": "df47f1bb.1b0bf", + "type": "switch", + "z": "1371dec5.76e671", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "tl 0", + "vt": "str" + }, + { + "t": "eq", + "v": "tl 1", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 230, + "y": 660, + "wires": [ + [ + "1cf57a24.20b176" + ], + [ + "faa67658.8edf18", + "c4524676.63b608" + ] + ] + }, + { + "id": "faa67658.8edf18", + "type": "delay", + "z": "1371dec5.76e671", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "x": 420, + "y": 720, + "wires": [ + [ + "9a52e6b.cbbc118" + ] + ] + }, + { + "id": "ca6bfbdf.4a71e8", + "type": "ui_template", + "z": "1371dec5.76e671", + "d": true, + "group": "1be83144.4fe4bf", + "name": "", + "order": 2, + "width": 0, + "height": 0, + "format": "
\n\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 980, + "y": 700, + "wires": [ + [] + ] + }, + { + "id": "3e73267.51682da", + "type": "exec", + "z": "1371dec5.76e671", + "command": "i2cdetect -y 1", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "1", + "oldrc": false, + "name": "i2c update", + "x": 750, + "y": 620, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "e8c9d8e.f1d5428", + "type": "python3-function", + "z": "1371dec5.76e671", + "name": "wait RGB", + "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\n \nreturn msg;", + "outputs": 1, + "x": 560, + "y": 600, + "wires": [ + [ + "3e73267.51682da" + ] + ] + }, + { + "id": "1cf57a24.20b176", + "type": "function", + "z": "1371dec5.76e671", + "name": "set free", + "func": "global.set(\"state\",\"free\");\nreturn msg", + "outputs": 1, + "noerr": 0, + "x": 420, + "y": 600, + "wires": [ + [ + "e8c9d8e.f1d5428" + ] + ] + }, + { + "id": "e3b347e3.b19f98", + "type": "python3-function", + "z": "1371dec5.76e671", + "name": "actuate RGB", + "func": "import smbus\nbus = smbus.SMBus(1)\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, 255)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 255)\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, 255)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 255)\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, 255)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 255)\nreturn msg;", + "outputs": 1, + "x": 570, + "y": 660, + "wires": [ + [ + "3e73267.51682da" + ] + ] + }, + { + "id": "c4524676.63b608", + "type": "function", + "z": "1371dec5.76e671", + "name": "set busy", + "func": "global.set(\"state\",\"busy\");\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 420, + "y": 660, + "wires": [ + [ + "e3b347e3.b19f98" + ] + ] + }, + { + "id": "6a84252a.d52a0c", + "type": "ui_template", + "z": "bccd1f23.87219", + "group": "833bc5bb.217ba8", + "name": "Stream Pi Camera", + "order": 1, + "width": 14, + "height": 9, + "format": "
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 110, + "y": 100, + "wires": [ + [] + ] + }, + { + "id": "dc48dc42.98d18", + "type": "function", + "z": "bccd1f23.87219", + "name": "set global", + "func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);", + "outputs": 1, + "noerr": 0, + "x": 1480, + "y": 400, + "wires": [ + [] + ] + }, + { + "id": "5b043fe6.df031", + "type": "function", + "z": "bccd1f23.87219", + "name": "focus.js", + "func": "state = global.get(\"state\");\n\nif (state == null){\n state=\"free\"\n}\n\n\nvar nb_step= global.get(\"nb_step\");\n\nif (nb_step === undefined || nb_step === \"\" || nb_step === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Number of step\"\n}\n\nelse {\n\n if(msg.topic === \"up\" & state ===\"free\"){\n nb_step = global.get(\"nb_step\");\n msg.nb_step = nb_step;\n msg.orientation = \"up\";\n msg.rgb = {r:255, g:0, b:255}\n msg.topic = \"Focus\"\n return msg;\n }\n \n if(msg.topic === \"down\" & state ===\"free\"){\n nb_step = global.get(\"nb_step\");\n msg.nb_step = nb_step;\n msg.orientation = \"down\";\n msg.rgb = {r:255, g:0, b:255}\n msg.topic = \"Focus\"\n return msg;\n }\n}\nreturn msg;\n", + "outputs": 1, + "noerr": 0, + "x": 980, + "y": 280, + "wires": [ + [ + "e7f18662.70dcf8" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" + }, + { + "id": "8c19fb64.8a1828", + "type": "python3-function", + "z": "bccd1f23.87219", + "name": "focus.py", + "func": "\nimport sys\n\nfrom adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nnb_step = int(msg[\"nb_step\"])\norientation = msg[\"orientation\"]\n\nkit = MotorKit()\n\nstage = kit.stepper2\n\nstage.release()\n\n#0.25mm/step\n#31um/microsteps\n\n \nif orientation == 'up':\n for i in range(nb_step):\n stage.onestep(direction=stepper.FORWARD, style=stepper.MICROSTEP)\n sleep(0.001)\n \nif orientation == 'down':\n for i in range(nb_step):\n stage.onestep(direction=stepper.BACKWARD, style=stepper.MICROSTEP)\n sleep(0.001)\n \nstage.release()\n\nmsg[\"topic\"] = \"focus\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg", + "outputs": 1, + "x": 1280, + "y": 260, + "wires": [ + [ + "7b23bbd5.4483d4" + ] + ] + }, + { + "id": "21816a62.827a56", + "type": "python3-function", + "z": "bccd1f23.87219", + "name": "pump.py", + "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nvolume = int(msg[\"volume\"])\norientation = str(msg[\"orientation\"])\nflowrate = float(msg[\"flowrate\"])\n\nkit = MotorKit()\n\npump_stepper = kit.stepper1\n\npump_stepper.release()\n\n \nif orientation == \"forward\":\n orientation=stepper.BACKWARD\nif orientation == \"backward\":\n orientation=stepper.FORWARD\n \nnb_step=volume*507 #if sleep(0.05) in between 2 steps\n#35000steps for 69g\n \n#nb_step=vol*460 if sleep(0) in between 2 steps\nduration=(volume*60)/flowrate\n \ndelay=(duration/nb_step)-0.005\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=orientation, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg", + "outputs": 1, + "x": 580, + "y": 220, + "wires": [ + [ + "90fc64b2.db5df8" + ] + ] + }, + { + "id": "7b68bdbe.e57094", + "type": "function", + "z": "bccd1f23.87219", + "name": "pump.js", + "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar manual_volume= global.get(\"manual_volume\");\nvar flowrate= global.get(\"flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to pass\";\n \n}else if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Flowrate\";\n \n}else {\n if(msg.topic === \"forward\" & state===\"free\"){\n volume = global.get(\"manual_volume\");\n msg.volume = volume;\n msg.orientation = \"forward\";\n msg.flowrate = global.get(\"flowrate\");\n msg.rgb = {r:0, g:255, b:255};\n msg.topic = \"Pump\"\n }\n if(msg.topic === \"backward\" & state===\"free\"){\n volume = global.get(\"manual_volume\");\n msg.volume = volume;\n msg.orientation = \"backward\";\n msg.flowrate = global.get(\"flowrate\");\n msg.rgb = {r:0, g:255, b:255};\n msg.topic = \"Pump\";\n }\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 280, + "y": 240, + "wires": [ + [ + "7994feb9.fcfc9" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" + }, + { + "id": "c0199136.20bd7", + "type": "link out", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "a208caf.0d23338", + "d17415a3.fca5c8" + ], + "x": 1235, + "y": 220, + "wires": [] + }, + { + "id": "da53c4c2.6b17b8", + "type": "python3-function", + "z": "bccd1f23.87219", + "name": "actuate RGB", + "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nrgb=msg['rgb']\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nreturn msg;", + "outputs": 1, + "x": 1490, + "y": 460, + "wires": [ + [ + "1276a75f.d8d1a9" + ] + ] + }, + { + "id": "8778c73a.ddc6e8", + "type": "exec", + "z": "bccd1f23.87219", + "command": "i2cdetect -y 1", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "1", + "oldrc": false, + "name": "i2c update", + "x": 1830, + "y": 500, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "a208caf.0d23338", + "type": "link in", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "c0199136.20bd7", + "2dff3966.a5b2d6" + ], + "x": 1375, + "y": 460, + "wires": [ + [ + "da53c4c2.6b17b8" + ] + ] + }, + { + "id": "9b5cac2c.6de57", + "type": "python3-function", + "z": "bccd1f23.87219", + "name": "wait RGB", + "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nreturn msg;", + "outputs": 1, + "x": 1480, + "y": 540, + "wires": [ + [ + "8479740e.6373c8" + ] + ] + }, + { + "id": "7b23bbd5.4483d4", + "type": "link out", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "e4351408.b0b288", + "2bc762dd.1115ce", + "a50134c.ed45ac8" + ], + "x": 1395, + "y": 260, + "wires": [] + }, + { + "id": "e4351408.b0b288", + "type": "link in", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "7b23bbd5.4483d4", + "90fc64b2.db5df8" + ], + "x": 1375, + "y": 540, + "wires": [ + [ + "9b5cac2c.6de57" + ] + ] + }, + { + "id": "2dff3966.a5b2d6", + "type": "link out", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "a208caf.0d23338", + "d17415a3.fca5c8" + ], + "x": 535, + "y": 180, + "wires": [] + }, + { + "id": "90fc64b2.db5df8", + "type": "link out", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "e4351408.b0b288", + "2bc762dd.1115ce", + "a50134c.ed45ac8" + ], + "x": 695, + "y": 220, + "wires": [] + }, + { + "id": "1276a75f.d8d1a9", + "type": "function", + "z": "bccd1f23.87219", + "name": "set busy", + "func": "global.set(\"state\",\"busy\");\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1640, + "y": 460, + "wires": [ + [ + "8778c73a.ddc6e8" + ] + ] + }, + { + "id": "8479740e.6373c8", + "type": "function", + "z": "bccd1f23.87219", + "name": "set free", + "func": "global.set(\"state\",\"free\");\nreturn msg", + "outputs": 1, + "noerr": 0, + "x": 1640, + "y": 540, + "wires": [ + [ + "8778c73a.ddc6e8" + ] + ] + }, + { + "id": "17a53f92.824d2", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "567a49a4.244cb8", + "name": "Instrument", + "order": 2, + "width": 0, + "height": 0, + "format": "
\n Instrument :\n \n PlanktonScope V2.1\n \n
", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 150, + "y": 400, + "wires": [ + [] + ] + }, + { + "id": "d2b74a01.166498", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "567a49a4.244cb8", + "name": "Software", + "order": 3, + "width": 0, + "height": 0, + "format": "
\n Software :\n \n Node-RED Dashboard V2.0\n \n
", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 160, + "y": 440, + "wires": [ + [] + ] + }, + { + "id": "a5c019f.91d15e8", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "567a49a4.244cb8", + "name": "Camera", + "order": 1, + "width": 0, + "height": 0, + "format": "
\n Camera :\n \n Pi Camera v2.1\n \n
", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 160, + "y": 480, + "wires": [ + [] + ] + }, + { + "id": "f59a2f0d.5e9af", + "type": "ui_numeric", + "z": "baa1e3d9.cb29d", + "name": "acq_minimum_mesh", + "label": "Min fraction size (μm)", + "tooltip": "", + "group": "404c301a.19c4e", + "order": 2, + "width": 5, + "height": 1, + "wrap": false, + "passthru": true, + "topic": "acq_minimum_mesh", + "format": "{{value}}", + "min": 0, + "max": "300", + "step": "10", + "x": 120, + "y": 100, + "wires": [ + [ + "fb887036.12429" + ] + ] + }, + { + "id": "6008a8bb.259f08", + "type": "ui_numeric", + "z": "baa1e3d9.cb29d", + "name": "acq_maximum_mesh", + "label": "Max fraction size (μm)", + "tooltip": "", + "group": "404c301a.19c4e", + "order": 3, + "width": 5, + "height": 1, + "wrap": false, + "passthru": true, + "topic": "acq_maximum_mesh", + "format": "{{value}}", + "min": "200", + "max": "2000", + "step": "100", + "x": 120, + "y": 160, + "wires": [ + [ + "fb887036.12429" + ] + ] + }, + { + "id": "6b34c456.83178c", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "acq_id", + "label": "Acquisition unique ID*", + "tooltip": "", + "group": "4322c187.e73e5", + "order": 2, + "width": 5, + "height": 1, + "passthru": true, + "mode": "text", + "delay": 300, + "topic": "acq_id", + "x": 170, + "y": 300, + "wires": [ + [ + "a39af546.4c30c8" + ] + ] + }, + { + "id": "314ebbc0.040b84", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "store generic", + "func": "global.set(\"acq_instrument\",\"PlanktonScope V2.1\");\nglobal.set(\"acq_software\",\"Node-RED Dashboard\");\nglobal.set(\"acq_camera\",\"Pi Camera V2.1\");\nglobal.set(\"acq_instrument_ID\",\"copepode\");", + "outputs": 1, + "noerr": 0, + "x": 370, + "y": 80, + "wires": [ + [] + ] + }, + { + "id": "109cf039.1ca8d", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "cancel", + "group": "b7919ae2.c01788", + "order": 3, + "width": 4, + "height": 1, + "passthru": false, + "label": "Cancel Acquisition", + "tooltip": "", + "color": "#AD1625", + "bgcolor": "white", + "icon": "pause_circle_filled", + "payload": "stop", + "payloadType": "str", + "topic": "cancel", + "x": 570, + "y": 120, + "wires": [ + [ + "c339e7a4.7e7608", + "995fa523.83cba8" + ] + ] + }, + { + "id": "dae10d44.76f08", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "pump.js", + "func": "state = global.get(\"state\");\n\nif (state == null){\n state=\"free\"\n}\n\nif(state===\"free\"||state===\"canceled\"){\n volume = global.get(\"acq_volume\");\n flowrate = global.get(\"sug_flowrate\");\n duration=(((volume*60)/flowrate)-2)*1000\n global.set(\"duration\",duration);\n \n msg.volume = volume;\n msg.orientation = \"forward\";\n msg.flowrate = flowrate;\n msg.rgb = {r:0, g:255, b:255}\n msg.state = state\n \n return msg;\n \n \n}", + "outputs": 1, + "noerr": 0, + "x": 1140, + "y": 560, + "wires": [ + [ + "d3ab1a14.86b8b8", + "ff805ffc.f9134" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" + }, + { + "id": "7789839d.69b48c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "4e0cd5ea.17e59c", + "name": "Optic Configuration", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Optic Configuration
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 130, + "y": 100, + "wires": [ + [ + "2a65c3ec.49a6bc" + ] + ] + }, + { + "id": "6ea6c306.f9c12c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ef590206.24f6", + "name": "Fluidic Acquisition", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Fluidic Acquisition
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 130, + "y": 140, + "wires": [ + [ + "2a65c3ec.49a6bc" + ] + ] + }, + { + "id": "bb9eb153.9e36c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ae8f6620.073358", + "name": "Segmentation", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Segmentation
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 140, + "y": 180, + "wires": [ + [ + "2a65c3ec.49a6bc" + ] + ] + }, + { + "id": "eaf8ee7f.96f44", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "196518b2.4d53b7", + "name": "Gallery", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Gallery
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 160, + "y": 220, + "wires": [ + [ + "2a65c3ec.49a6bc" + ] + ] + }, + { + "id": "f37444ff.d17068", + "type": "ui_text_input", + "z": "bccd1f23.87219", + "name": "nb_step", + "label": "Number of step(s)", + "tooltip": "", + "group": "fbd92986.1028c8", + "order": 2, + "width": 0, + "height": 0, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "nb_step", + "x": 820, + "y": 340, + "wires": [ + [ + "2f51f4e2.4dcaec" + ] + ] + }, + { + "id": "811cd88c.daf528", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "down", + "group": "fbd92986.1028c8", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "arrow_downward", + "payload": "down", + "payloadType": "str", + "topic": "down", + "x": 830, + "y": 300, + "wires": [ + [ + "5b043fe6.df031" + ] + ] + }, + { + "id": "edda4df4.76de2", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "up", + "group": "fbd92986.1028c8", + "order": 1, + "width": 0, + "height": 0, + "passthru": false, + "label": "", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "arrow_upwards", + "payload": "up", + "payloadType": "str", + "topic": "up", + "x": 830, + "y": 260, + "wires": [ + [ + "5b043fe6.df031" + ] + ] + }, + { + "id": "bb667f4c.06e44", + "type": "link out", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "e4892a16.664bf8" + ], + "x": 235, + "y": 300, + "wires": [] + }, + { + "id": "e4892a16.664bf8", + "type": "link in", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "bb667f4c.06e44", + "2f51f4e2.4dcaec", + "4a0baa98.618744" + ], + "x": 1375, + "y": 400, + "wires": [ + [ + "dc48dc42.98d18" + ] + ] + }, + { + "id": "2f51f4e2.4dcaec", + "type": "link out", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "e4892a16.664bf8" + ], + "x": 975, + "y": 340, + "wires": [] + }, + { + "id": "68962547.34a67c", + "type": "ui_text_input", + "z": "bccd1f23.87219", + "name": "manual_volume", + "label": "Volume to pass (ml)", + "tooltip": "", + "group": "707d9797.c8e798", + "order": 3, + "width": 4, + "height": 1, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "manual_volume", + "x": 100, + "y": 340, + "wires": [ + [ + "4a0baa98.618744" + ] + ] + }, + { + "id": "4a0baa98.618744", + "type": "link out", + "z": "bccd1f23.87219", + "name": "", + "links": [ + "e4892a16.664bf8" + ], + "x": 235, + "y": 340, + "wires": [] + }, + { + "id": "34c81624.df1cea", + "type": "ui_slider", + "z": "bccd1f23.87219", + "name": "flowrate", + "label": "Flowrate (ml/min)*", + "tooltip": "", + "group": "707d9797.c8e798", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "outs": "end", + "topic": "flowrate", + "min": 0, + "max": "20", + "step": "0.1", + "x": 120, + "y": 300, + "wires": [ + [ + "bb667f4c.06e44" + ] + ] + }, + { + "id": "c1b1469.9650eb8", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "777a7c33.fcd804", + "name": "Settings", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Settings
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"height": 1, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "object_lon", + "x": 190, + "y": 300, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "f00f321f.77d76", + "type": "ui_date_picker", + "z": "b771c342.49603", + "name": "", + "label": "Date", + "group": "cef1e703.bcf3c8", + "order": 4, + "width": 12, + "height": 1, + "passthru": true, + "topic": "", + "x": 210, + "y": 340, + "wires": [ + [ + "3dba84a2.0de1bc" + ] + ] + }, + { + "id": "207fbdbb.2fe2a2", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "", + "label": "Time :", + "tooltip": "", + "group": "cef1e703.bcf3c8", + "order": 3, + "width": 7, + "height": 1, + "passthru": true, + "mode": "time", + "delay": 300, + "topic": "", + "x": 210, + "y": 380, + "wires": [ + [ + "61f9d7df.83ffe8" + ] + ] + }, + { + "id": "61f9d7df.83ffe8", + "type": "function", + "z": "b771c342.49603", + "name": "set time global", + "func": "var dt = new 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"wires": [ + [ + "7b68bdbe.e57094" + ] + ] + }, + { + "id": "961d27e7.da65c8", + "type": "ui_switch", + "z": "bccd1f23.87219", + "name": "light_state", + "label": "Light", + "tooltip": "", + "group": "4248342d.e55fac", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "decouple": "false", + "topic": "", + "style": "", + "onvalue": "1", + "onvalueType": "num", + "onicon": "", + "oncolor": "", + "offvalue": "0", + "offvalueType": "num", + "officon": "", + "offcolor": "", + "x": 90, + "y": 40, + "wires": [ + [ + "cbb8afed.0a026" + ] + ], + "icon": "font-awesome/fa-lightbulb-o" + }, + { + "id": "cc966678.da8d08", + "type": "ui_dropdown", + "z": "bccd1f23.87219", + "name": "acq_fnumber_objective", + "label": "M12 Lens*", + "tooltip": "", + "place": "Select option", + "group": "4248342d.e55fac", + "order": 2, + "width": 0, + "height": 0, + "passthru": true, + "options": [ + { + "label": "f 25mm 1/2\" 5MP IR", + "value": 25, + "type": "num" + }, + { + "label": "f 16mm 1/2.5\" 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", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 1430, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "8038414a.34461", + "type": "function", + "z": "bccd1f23.87219", + "name": "calculate", + "func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n global.set(\"magnification\",0.6);\n global.set(\"process_pixel\",1.86);\n global.set(\"sug_min\",60);\n global.set(\"sug_max\",670);\n global.set(\"sug_flowrate\",3);\n break;\n case \"16\":\n global.set(\"magnification\",0.94);\n global.set(\"process_pixel\",1.19);\n global.set(\"sug_min\",40);\n global.set(\"sug_max\",430);\n global.set(\"sug_flowrate\",2.4);\n break;\n case \"12\":\n global.set(\"magnification\",1.20);\n global.set(\"process_pixel\",0.94);\n global.set(\"sug_min\",30);\n global.set(\"sug_max\",340);\n global.set(\"sug_flowrate\",1.25);\n break;\n case \"8\":\n global.set(\"magnification\",1.78);\n global.set(\"process_pixel\",0.63);\n global.set(\"sug_min\",20);\n global.set(\"sug_max\",230);\n global.set(\"sug_flowrate\",0.42);\n break;\n case \"6\":\n global.set(\"magnification\",2.36);\n global.set(\"process_pixel\",0.48);\n global.set(\"sug_min\",15);\n global.set(\"sug_max\",170);\n global.set(\"sug_flowrate\",0.32);\n break;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1060, + "y": 40, + "wires": [ + [ + "ad87820f.b1d1e", + "d68a52ee.82e8e", + "238f26b1.e2089a", + "6e0f6d36.a6b854" + ] + ] + }, + { + "id": "eca088f.6ceed78", + "type": "ui_template", + "z": "bccd1f23.87219", + "group": "4248342d.e55fac", + "name": "Pi Camera settings", + "order": 7, + "width": 0, + "height": 0, + "format": "\n", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 850, + "y": 100, + "wires": [ + [] + ] + }, + { + "id": "3d2360ad.e41e7", + "type": "ui_template", + "z": "bccd1f23.87219", + "group": "4248342d.e55fac", + "name": "process_pixel", + "order": 4, + "width": 0, + "height": 0, + "format": "
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", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 1420, + "y": 120, + "wires": [ + [] + ] + }, + { + "id": "26b32f2c.c64fc", + "type": "ui_template", + "z": "bccd1f23.87219", + "group": "4248342d.e55fac", + "name": "max_size", + "order": 6, + "width": 0, + "height": 0, + "format": "
\n Biggest cells to explore :\n \n μm\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 1420, + "y": 160, + "wires": [ + [] + ] + }, + { + "id": "ad87820f.b1d1e", + "type": "function", + "z": "bccd1f23.87219", + "name": "get magnification", + "func": "var magnification = global.get(\"magnification\");\nmsg.payload = magnification;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1250, + "y": 40, + "wires": [ + [ + "9b515beb.4aea48" + ] + ] + }, + { + "id": "d68a52ee.82e8e", + "type": "function", + "z": "bccd1f23.87219", + "name": "get process_pixel", + "func": "var process_pixel = global.get(\"process_pixel\");\nmsg.payload = process_pixel;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1250, + "y": 80, + "wires": [ + [ + "3d2360ad.e41e7" + ] + ] + }, + { + "id": "238f26b1.e2089a", + "type": "function", + "z": "bccd1f23.87219", + "name": "get sug_min", + "func": "var sug_min = global.get(\"sug_min\");\nmsg.payload = sug_min;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1230, + "y": 120, + "wires": [ + [ + "8e66977b.9166a8" + ] + ] + }, + { + "id": "6e0f6d36.a6b854", + "type": "function", + "z": "bccd1f23.87219", + "name": "get sug_max", + "func": "var sug_max = global.get(\"sug_max\");\nmsg.payload = sug_max;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1230, + "y": 160, + "wires": [ + [ + "26b32f2c.c64fc" + ] + ] + }, + { + "id": "bb2bb7ce.1d1458", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "858a0e3c.987fe", + "name": "Stream Pi Camera", + "order": 1, + "width": 14, + "height": 11, + "format": "
", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 590, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "d0c5b57d.590818", + "type": "ui_ui_control", + "z": "baa1e3d9.cb29d", + "name": "", + "events": "change", + "x": 700, + "y": 80, + "wires": [ + [] + ] + }, + { + "id": "2fb129de.024a06", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 650, + "y": 540, + "wires": [ + [] + ] + }, + { + "id": "61b4993e.1f3fb8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Check form", + "func": "var acq_celltype= global.get(\"acq_celltype\");\nvar acq_minimum_mesh= global.get(\"acq_minimum_mesh\");\nvar acq_maximum_mesh= global.get(\"acq_maximum_mesh\");\nvar acq_volume= global.get(\"acq_volume\");\nvar acq_id= global.get(\"acq_id\");\n\nif (acq_celltype === undefined || acq_celltype === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Type of the flowcell\"\n}\nelse if (acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Lower fraction size\"\n}\nelse if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Upper fraction size\"\n}\nelse if (acq_volume === undefined || acq_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to image\"\n}\nelse if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Acquisition ID\"\n}\nelse {\n msg.topic = \"Start\";\n}\nreturn msg;\n", + "outputs": 1, + "noerr": 0, + "x": 730, + "y": 280, + "wires": [ + [ + "9e7bd689.f9c278" + ] + ] + }, + { + "id": "9e7bd689.f9c278", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "Start", + "vt": "str" + }, + { + "t": "eq", + "v": "Missing entry :", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 870, + "y": 280, + "wires": [ + [ + "f7fa6acf.f6ed28" + ], + [ + "2fb129de.024a06" + ] + ] + }, + { + "id": "16de754c.cc969b", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 1, + "width": 12, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 220, + "y": 480, + "wires": [ + [ + "222c851d.5d0a3a" + ] + ] + }, + { + "id": "84f3d040.5f7ea", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 2, + "width": 12, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 220, + "y": 540, + "wires": [ + [ + "986d960a.c75908" + ] + ] + }, + { + "id": "f61aaed5.1e64", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 1, + "width": 5, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Sample\"}", + "payloadType": "json", + "topic": "", + "x": 360, + "y": 520, + "wires": [ + [ + "6c792043.b6ff9" + ] + ] + }, + { + "id": "9ba6ec0a.22c96", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 2, + "width": 5, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 360, + "y": 580, + "wires": [ + [ + "fe840e05.b46f3" + ] + ] + }, + { + "id": "c72f8fae.23bd4", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "b7919ae2.c01788", + "order": 2, + "width": 5, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Optic Configuration\"}", + "payloadType": "json", + "topic": "", + "x": 560, + "y": 80, + "wires": [ + [ + "d0c5b57d.590818" + ] + ] + }, + { + "id": "cf48a0b9.7f208", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "b7919ae2.c01788", + "order": 5, + "width": 0, + "height": 0, + "passthru": false, + "label": "Start", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 570, + "y": 280, + "wires": [ + [ + "61b4993e.1f3fb8" + ] + ] + }, + { + "id": "389bef3.d94c61", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "acq_volume", + "label": "Volume to pass (ml)", + "tooltip": "", + "group": "4322c187.e73e5", + "order": 1, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": 300, + "topic": "acq_volume", + "x": 150, + "y": 220, + "wires": [ + [ + "fb887036.12429" + ] + ] + }, + { + "id": "a39af546.4c30c8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set global join", + "func": "var value = msg.payload.split(' ').join('_');\nvar key = msg.topic;\n\nglobal.set(key,value);", + "outputs": 1, + "noerr": 0, + "x": 380, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "75b738f0.cea208", + "type": "ui_toast", + "z": "bccd1f23.87219", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1290, + "y": 320, + "wires": [ + [] + ] + }, + { + "id": "e7f18662.70dcf8", + "type": "switch", + "z": "bccd1f23.87219", + "name": "", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "Focus", + "vt": "str" + }, + { + "t": "eq", + "v": "Missing entry :", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 1130, + "y": 280, + "wires": [ + [ + "c0199136.20bd7", + "8c19fb64.8a1828" + ], + [ + "75b738f0.cea208" + ] + ] + }, + { + "id": "c2aeba5f.a2ac98", + "type": "ui_toast", + "z": "bccd1f23.87219", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 590, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "7994feb9.fcfc9", + "type": "switch", + "z": "bccd1f23.87219", + "name": "", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "Pump", + "vt": "str" + }, + { + "t": "eq", + "v": "Missing entry :", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 430, + "y": 240, + "wires": [ + [ + "21816a62.827a56", + "2dff3966.a5b2d6" + ], + [ + "c2aeba5f.a2ac98" + ] + ] + }, + { + "id": "201ad81d.4a6d78", + "type": "http request", + "z": "baa1e3d9.cb29d", + "name": "Start timelapse", + "method": "GET", + "ret": "txt", + "paytoqs": false, + "url": "http://127.0.0.1/html/cmd_pipe.php?cmd=tl%201", + "tls": "", + "persist": false, + "proxy": "", + "authType": "", + "x": 980, + "y": 800, + "wires": [ + [] + ] + }, + { + "id": "c339e7a4.7e7608", + "type": "http request", + "z": "baa1e3d9.cb29d", + "name": "Stop timelapse", + "method": "GET", + "ret": "txt", + "paytoqs": false, + "url": "http://127.0.0.1/html/cmd_pipe.php?cmd=tl%200", + "tls": "", + "persist": false, + "proxy": "", + "authType": "", + "x": 720, + "y": 120, + "wires": [ + [ + "eaab9f19.c68ba" + ] + ] + }, + { + "id": "b4d324de.a2bd28", + "type": "ui_worldmap", + "z": "b771c342.49603", + "group": "cef1e703.bcf3c8", + "order": 6, + "width": 0, + "height": 0, + "name": "", + "lat": "1.5", + "lon": "1.5", + "zoom": "4", + "layer": "OSM grey", + "cluster": "1", + "maxage": "", + "usermenu": "hide", + "layers": "hide", + "panit": "false", + "panlock": "false", + "zoomlock": "false", + "hiderightclick": "true", + "coords": "deg", + "showgrid": "false", + "path": "/worldmap", + "x": 780, + "y": 400, + "wires": [] + }, + { + "id": "cf3e1477.25af68", + "type": "function", + "z": "b771c342.49603", + "name": "set point", + "func": "var sample_id= global.get(\"sample_id\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\n\nif (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n}\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample latitude\"\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample longitude\"\n}\n\nelse {\n msg.topic = \"Place\"\n msg.payload={\"name\":sample_id, \"lat\":object_lat, \"lon\":object_lon}\n}\nreturn msg;\n", + "outputs": 1, + "noerr": 0, + "x": 360, + "y": 440, + "wires": [ + [ + "105e9b1b.725865" + ] + ] + }, + { + "id": "d7a44df2.0fb29", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "cef1e703.bcf3c8", + "order": 5, + "width": 5, + "height": 1, + "passthru": false, + "label": "Place", + "tooltip": "", + "color": "#333333", + "bgcolor": "white", + "icon": "", + "payload": "", + "payloadType": "str", + "topic": "", + "x": 210, + "y": 440, + "wires": [ + [ + "cf3e1477.25af68" + ] + ] + }, + { + "id": "105e9b1b.725865", + "type": "switch", + "z": "b771c342.49603", + "name": "", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "Place", + "vt": "str" + }, + { + "t": "eq", + "v": "Missing entry :", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 550, + "y": 440, + "wires": [ + [ + "b4d324de.a2bd28" + ], + [ + "10c9c12a.feae6f" + ] + ] + }, + { + "id": "10c9c12a.feae6f", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 790, + "y": 460, + "wires": [ + [] + ] + }, + { + "id": "32f57168.89cbae", + "type": "comment", + "z": "baa1e3d9.cb29d", + "name": "generic info", + "info": "", + "x": 150, + "y": 360, + "wires": [] + }, + { + "id": "44094d9d.62c6c4", + "type": "exec", + "z": "baa1e3d9.cb29d", + "command": "i2cdetect -y 1", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "1", + "oldrc": false, + "name": "i2c update", + "x": 1170, + "y": 120, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "eaab9f19.c68ba", + "type": "python3-function", + "z": "baa1e3d9.cb29d", + "name": "wait RGB", + "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, 0)\nbus.write_byte_data(0x0d, 0x02, 255)\nbus.write_byte_data(0x0d, 0x03, 0)\nreturn msg;", + "outputs": 1, + "x": 880, + "y": 120, + "wires": [ + [ + "154d5ce1.81ed03" + ] + ] + }, + { + "id": "154d5ce1.81ed03", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set free", + "func": "global.set(\"state\",\"free\");\nreturn msg", + "outputs": 1, + "noerr": 0, + "x": 1020, + "y": 120, + "wires": [ + [ + "44094d9d.62c6c4" + ] + ] + }, + { + "id": "f07dec1d.147ce", + "type": "ui_text_input", + "z": "baa1e3d9.cb29d", + "name": "comment", + "label": "Comment", + "tooltip": "", + "group": "b7919ae2.c01788", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": 300, + "topic": "comment", + "x": 160, + "y": 260, + "wires": [ + [ + "fb887036.12429" + ] + ] + }, + { + "id": "8bd55b54.8e3938", + "type": "file", + "z": "baa1e3d9.cb29d", + "name": "logs.json", + "filename": "/var/www/logs.json", + "appendNewline": false, + "createDir": false, + "overwriteFile": "false", + "encoding": "none", + "x": 2000, + "y": 1340, + "wires": [ + [ + "20a2d27e.7ccafe" + ] + ] + }, + { + "id": "99fd2803.0843a8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get global", + "func": "msg.payload = {\n \"comment\":global.get(\"comment\"),\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \"sample_hour\":global.get(\"sample_hour\"),\n \"sample_minute\":global.get(\"sample_minute\"),\n \"sample_day\":global.get(\"sample_day\"),\n \"sample_month\":global.get(\"sample_month\"),\n \"sample_year\":global.get(\"sample_year\"),\n \n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\"),\n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"process_pixel\":global.get(\"process_pixel\"),\n \n \"acq_camera\":global.get(\"acq_camera\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_instrument_ID\":global.get(\"acq_instrument_ID\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_flowrate\":global.get(\"sug_flowrate\")\n }\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1820, + "y": 1340, + "wires": [ + [ + "8bd55b54.8e3938" + ] + ] + }, + { + "id": "ae692178.d44d1", + "type": "python3-function", + "z": "baa1e3d9.cb29d", + "name": "pump.py", + "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\npump_stepper.release()\n\nstate = str(msg[\"state\"])\nvolume = int(msg[\"volume\"])\norientation = str(msg[\"orientation\"])\nflowrate = float(msg[\"flowrate\"])\n\n\nif(state==\"free\"):\n #35000steps will pass 69ml if sleep(0.05) in between 2 steps\n #1ml is about 35000/69=507steps\n nb_step=volume*507 \n #nb_step=vol*460 if sleep(0) in between 2 steps\n \n duration=(volume*60)/flowrate\n \n delay=(duration/nb_step)-0.005\n \nif(state==\"canceled\"):\n nb_step=0\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg", + "outputs": 1, + "x": 1240, + "y": 1260, + "wires": [ + [ + "783209c7.51c5a8" + ] + ] + }, + { + "id": "a3fd6b29.2ef5f8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "pump.js", + "func": "state = global.get(\"state\");\n\nif (state == null){\n state=\"free\"\n}\n\nif(state===\"free\"||state===\"canceled\"){\n volume = global.get(\"acq_volume\");\n flowrate = global.get(\"sug_flowrate\");\n duration=(((volume*60)/flowrate)-2)*1000\n global.set(\"duration\",duration);\n \n msg.volume = volume;\n msg.orientation = \"forward\";\n msg.flowrate = flowrate;\n msg.rgb = {r:0, g:255, b:255}\n msg.state = state\n \n return msg;\n \n \n}", + "outputs": 1, + "noerr": 0, + "x": 1040, + "y": 1360, + "wires": [ + [ + "ae692178.d44d1", + "e0f9efda.fa4ce" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" + }, + { + "id": "e0f9efda.fa4ce", + "type": "python3-function", + "z": "baa1e3d9.cb29d", + "name": "actuate RGB", + "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nrgb=msg['rgb']\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nreturn msg;", + "outputs": 1, + "x": 1250, + "y": 1200, + "wires": [ + [ + "3b498e72.6e6292" + ] + ] + }, + { + "id": "7baf5071.dc3b2", + "type": "exec", + "z": "baa1e3d9.cb29d", + "command": "i2cdetect -y 1", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "1", + "oldrc": false, + "name": "i2c update", + "x": 1570, + "y": 1200, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "783209c7.51c5a8", + "type": "link out", + "z": "baa1e3d9.cb29d", + "name": "", + "links": [ + "e1354861.0bb648", + "2bc762dd.1115ce", + "a50134c.ed45ac8", + "f0ef065a.362028" + ], + "x": 1335, + "y": 1260, + "wires": [] + }, + { + "id": "3b498e72.6e6292", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set busy", + "func": "global.set(\"state\",\"busy\");\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1420, + "y": 1200, + "wires": [ + [ + "7baf5071.dc3b2" + ] + ] + }, + { + "id": "cd56bb1c.8ce378", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1010, + "y": 1200, + "wires": [ + [] + ] + }, + { + "id": "c82e467c.99e208", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "Missing entry :", + "vt": "str" + }, + { + "t": "eq", + "v": "Start", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 850, + "y": 1220, + "wires": [ + [ + "cd56bb1c.8ce378" + ], + [ + "a3fd6b29.2ef5f8", + "a642fc0b.b6dd7" + ] + ] + }, + { + "id": "c6bd5987.c48f78", + "type": "http request", + "z": "baa1e3d9.cb29d", + "name": "Start timelapse", + "method": "GET", + "ret": "txt", + "paytoqs": false, + "url": "http://127.0.0.1/html/cmd_pipe.php?cmd=tl%201", + "tls": "", + "persist": false, + "proxy": "", + "authType": "", + "x": 1100, + "y": 1600, + "wires": [ + [] + ] + }, + { + "id": "8c15fd05.81b5", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get duration acquisition", + "func": "msg.delay = global.get(\"duration\");\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1290, + "y": 1360, + "wires": [ + [ + "2ff9c0cb.7288b", + "34929df1.bfe602" + ] + ] + }, + { + "id": "2ff9c0cb.7288b", + "type": "delay", + "z": "baa1e3d9.cb29d", + "name": "wait duration", + "pauseType": "delayv", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "x": 1510, + "y": 1360, + "wires": [ + [ + "99fd2803.0843a8", + "3475ecd5.6655f4", + "8f991d2e.6e8f3", + "e6a12f33.c7768" + ] + ] + }, + { + "id": "a642fc0b.b6dd7", + "type": "delay", + "z": "baa1e3d9.cb29d", + "name": "", + "pauseType": "delay", + "timeout": "500", + "timeoutUnits": "milliseconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "x": 810, + "y": 1540, + "wires": [ + [ + "c6bd5987.c48f78", + "8c15fd05.81b5" + ] + ] + }, + { + "id": "6aaa3bc6.b7dda4", + "type": "ui_gauge", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "b5d61bc7.54fe48", + "order": 1, + "width": 10, + "height": 2, + "gtype": "donut", + "title": "", + "label": "%", + "format": "{{value}}", + "min": 0, + "max": "100", + "colors": [ + "#ffffff", + "#ffffff", + "#097479" + ], + "seg1": "", + "seg2": "", + "x": 2250, + "y": 1500, + "wires": [] + }, + { + "id": "34929df1.bfe602", + "type": "trigger", + "z": "baa1e3d9.cb29d", + "op1": "1", + "op2": "0", + "op1type": "str", + "op2type": "str", + "duration": "-1", + "extend": false, + "units": "s", + "reset": "done", + "bytopic": "all", + "name": "", + "x": 1960, + "y": 1600, + "wires": [ + [ + "e98903d2.f35c1" + ] + ] + }, + { + "id": "3475ecd5.6655f4", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "stop", + "func": "global.set(\"time_to_wait\",0);\nmsg.payload=\"done\";\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1810, + "y": 1500, + "wires": [ + [ + "34929df1.bfe602", + "6aaa3bc6.b7dda4" + ] + ] + }, + { + "id": "e98903d2.f35c1", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "pulse", + "func": "var time_to_wait= global.get(\"time_to_wait\");\n\nif (time_to_wait === undefined || time_to_wait === \"\"|| time_to_wait == NaN) {\n time_to_wait=0\n global.set(\"time_to_wait\",time_to_wait);\n}else {\n time_to_wait++;\n global.set(\"time_to_wait\",time_to_wait);\n duration=global.get(\"duration\")/1000;\n percent=(100* time_to_wait/duration).toFixed(0)\n msg.payload=percent;\n return msg;\n \n}", + "outputs": 1, + "noerr": 0, + "x": 2110, + "y": 1600, + "wires": [ + [ + "6aaa3bc6.b7dda4" + ] + ] + }, + { + "id": "f0ef065a.362028", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "", + "links": [ + "a61d4164.135dd", + "783209c7.51c5a8", + "260e60f3.878ad", + "c5ee25c5.3c1848" + ], + "x": 1635, + "y": 1560, + "wires": [ + [ + "3475ecd5.6655f4" + ] + ] + }, + { + "id": "8f991d2e.6e8f3", + "type": "exec", + "z": "baa1e3d9.cb29d", + "command": "ls -l /var/www/html/media | grep \"th\" | tail -1 | awk -F \" \" '{print $9}' | awk -F \"_\" '{print $1\"_\"$2}'| tr -d \"\\n\"", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "get thumbail name", + "x": 1850, + "y": 1280, + "wires": [ + [ + "9dcdbf1f.4aa21" + ], + [], + [] + ] + }, + { + "id": "e6a12f33.c7768", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "mkdir", + "func": "acq_id=global.get(\"acq_id\")\nmsg.payload=\"/var/www/\"+acq_id\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1770, + "y": 1140, + "wires": [ + [ + "43c69256.b9633c" + ] + ] + }, + { + "id": "43c69256.b9633c", + "type": "exec", + "z": "baa1e3d9.cb29d", + "command": "mkdir", + "addpay": true, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "mkdir acq_id", + "x": 1910, + "y": 1140, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "517f13e8.e0793c", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "move", + "func": "file_prefix=msg.payload;\nacq_id=global.get(\"acq_id\")\nmsg.payload=\"/var/www/html/media/\"+file_prefix+\"* /var/www/\"+acq_id+\"/\";\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 2330, + "y": 1240, + "wires": [ + [ + "83a1d49e.a29a48" + ] + ] + }, + { + "id": "9dcdbf1f.4aa21", + "type": "delay", + "z": "baa1e3d9.cb29d", + "name": "", + "pauseType": "delay", + "timeout": "200", + "timeoutUnits": "milliseconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "x": 2090, + "y": 1260, + "wires": [ + [ + "517f13e8.e0793c" + ] + ] + }, + { + "id": "83a1d49e.a29a48", + "type": "exec", + "z": "baa1e3d9.cb29d", + "command": "mv", + "addpay": true, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "", + "x": 2480, + "y": 1260, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "20a2d27e.7ccafe", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "move", + "func": "file_prefix=msg.payload;\nacq_id=global.get(\"acq_id\")\nmsg.payload=\"/var/www/logs.json /var/www/\"+acq_id+\"/\";\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 2330, + "y": 1320, + "wires": [ + [ + "87cff57.f6d3708" + ] + ] + }, + { + "id": "87cff57.f6d3708", + "type": "exec", + "z": "baa1e3d9.cb29d", + "command": "mv", + "addpay": true, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "", + "x": 2480, + "y": 1340, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "d91229e3.bf0f18", + "type": "while-loop", + "z": "baa1e3d9.cb29d", + "name": "", + "condi": "global.get(\"job\")===\"run\"", + "x": 1330, + "y": 200, + "wires": [ + [ + "427871db.b4902", + "a61b71c3.afaf" + ], + [ + "427871db.b4902", + "a61b71c3.afaf" + ] + ] + }, + { + "id": "217ff214.a25c2e", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Run", + "func": "global.set(\"job\",\"run\")\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1030, + "y": 220, + "wires": [ + [ + "d91229e3.bf0f18" + ] + ] + }, + { + "id": "995fa523.83cba8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "Stop", + "func": "global.set(\"job\",\"stop\")\nmsg.payload=\"stop\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1030, + "y": 180, + "wires": [ + [ + "d91229e3.bf0f18" + ] + ] + }, + { + "id": "d3ab1a14.86b8b8", + "type": "python3-function", + "z": "baa1e3d9.cb29d", + "name": "pump.py", + "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\npump_stepper.release()\n\nstate = str(msg[\"state\"])\nvolume = int(msg[\"volume\"])\norientation = str(msg[\"orientation\"])\nflowrate = float(msg[\"flowrate\"])\n\n\nif(state==\"free\"):\n #35000steps will pass 69ml if sleep(0.05) in between 2 steps\n #1ml is about 35000/69=507steps\n nb_step=volume*507 \n #nb_step=vol*460 if sleep(0) in between 2 steps\n \n duration=(volume*60)/flowrate\n \n delay=(duration/nb_step)-0.005\n \nif(state==\"canceled\"):\n nb_step=0\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg", + "outputs": 1, + "x": 1380, + "y": 520, + "wires": [ + [ + "444587e4.dc23a8" + ] + ] + }, + { + "id": "ff805ffc.f9134", + "type": "python3-function", + "z": "baa1e3d9.cb29d", + "name": "actuate RGB", + "func": "import smbus\nfrom time import sleep\n\nbus = smbus.SMBus(1)\n\nrgb=msg['rgb']\nbus.write_byte_data(0x0d, 0x00, 0)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 1)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nbus.write_byte_data(0x0d, 0x00, 2)\nbus.write_byte_data(0x0d, 0x01, rgb[\"r\"])\nbus.write_byte_data(0x0d, 0x02, rgb[\"g\"])\nbus.write_byte_data(0x0d, 0x03, rgb[\"b\"])\nreturn msg;", + "outputs": 1, + "x": 1390, + "y": 460, + "wires": [ + [ + "a27b3163.19c31" + ] + ] + }, + { + "id": "444587e4.dc23a8", + "type": "link out", + "z": "baa1e3d9.cb29d", + "name": "", + "links": [ + "e1354861.0bb648", + "2bc762dd.1115ce", + "a50134c.ed45ac8", + "17d09d70.b50223" + ], + "x": 1475, + "y": 520, + "wires": [] + }, + { + "id": "a27b3163.19c31", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set busy", + "func": "global.set(\"state\",\"busy\");\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1560, + "y": 460, + "wires": [ + [] + ] + }, + { + "id": "7c974057.4d3f", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get duration acquisition", + "func": "msg.delay = global.get(\"duration\");\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 1430, + "y": 620, + "wires": [ + [] + ] + }, + { + "id": "482c8e09.a77df", + "type": "python3-function", + "z": "baa1e3d9.cb29d", + "name": "pump.py", + "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\n\npump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.SIMPLE)\nsleep(0.1)", + "outputs": 1, + "x": 1820, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "427871db.b4902", + "type": "debug", + "z": "baa1e3d9.cb29d", + "name": "", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "false", + "x": 1850, + "y": 220, + "wires": [] + }, + { + "id": "a61b71c3.afaf", + "type": "trigger", + "z": "baa1e3d9.cb29d", + "op1": "1", + "op2": "0", + "op1type": "str", + "op2type": "str", + "duration": "-250", + "extend": false, + "units": "ms", + "reset": "stop", + "bytopic": "all", + "name": "", + "x": 1620, + "y": 280, + "wires": [ + [ + "482c8e09.a77df" + ] + ] + }, + { + "id": "f7fa6acf.f6ed28", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "pump.js", + "func": "state = global.get(\"state\");\n\nif (state == null){\n state=\"free\"\n}\n\nif(state===\"free\"||state===\"canceled\"){\n volume = global.get(\"acq_volume\");\n flowrate = global.get(\"sug_flowrate\");\n duration=(((volume*60)/flowrate)-2)*1000\n global.set(\"duration\",duration);\n \n msg.volume = volume;\n msg.orientation = \"forward\";\n msg.flowrate = flowrate;\n msg.rgb = {r:0, g:255, b:255}\n msg.state = state\n \n return msg;\n \n \n}", + "outputs": 1, + "noerr": 0, + "x": 1100, + "y": 340, + "wires": [ + [ + "dd817ccf.04ec" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" + }, + { + "id": "dd817ccf.04ec", + "type": "python3-function", + "z": "baa1e3d9.cb29d", + "name": "pump.py", + "func": "from adafruit_motor import stepper\nfrom adafruit_motorkit import MotorKit\nfrom time import sleep\n\nkit = MotorKit()\npump_stepper = kit.stepper1\npump_stepper.release()\n\nstate = str(msg[\"state\"])\nvolume = int(msg[\"volume\"])\nflowrate = float(msg[\"flowrate\"])\n\n\nif(state==\"free\"):\n #35000steps will pass 69ml if sleep(0.05) in between 2 steps\n #1ml is about 35000/69=507steps\n nb_step=volume*507 \n #nb_step=vol*460 if sleep(0) in between 2 steps\n \n duration=(volume*60)/flowrate\n \n delay=(duration/nb_step)-0.005\n \nif(state==\"canceled\"):\n nb_step=0\n \nfor i in range(nb_step):\n pump_stepper.onestep(direction=stepper.BACKWARD, style=stepper.DOUBLE)\n sleep(delay)\n \nsleep(1)\npump_stepper.release()\n\nmsg[\"topic\"] = \"pump\"\nmsg[\"payload\"] = \"done\"\n\nreturn msg", + "outputs": 1, + "x": 1280, + "y": 340, + "wires": [ + [] + ] + }, + { + "id": "7a5b8294.92ad3c", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "b7919ae2.c01788", + "order": 4, + "width": 5, + "height": 1, + "passthru": false, + "label": "Show", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "", + "payloadType": "str", + "topic": "", + "x": 470, + "y": 380, + "wires": [ + [ + "e2919164.70927" + ] + ] + }, + { + "id": "29be525e.0c87fe", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "b5d61bc7.54fe48", + "name": "show global", + "order": 2, + "width": 0, + "height": 0, + "format": "
\n \n
", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 750, + "y": 380, + "wires": [ + [] + ] + }, + { + "id": "e2919164.70927", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get global", + "func": "msg.payload = {\n \"comment\":global.get(\"comment\"),\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \n \"sample_hour\":global.get(\"sample_hour\"),\n \"sample_minute\":global.get(\"sample_minute\"),\n \"sample_day\":global.get(\"sample_day\"),\n \"sample_month\":global.get(\"sample_month\"),\n \"sample_year\":global.get(\"sample_year\"),\n \n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\"),\n \n \"acq_id\":global.get(\"acq_id\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"process_pixel\":global.get(\"process_pixel\"),\n \n \"acq_camera\":global.get(\"acq_camera\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_instrument_ID\":global.get(\"acq_instrument_ID\"),\n \"acq_volume\":global.get(\"acq_volume\"),\n \"acq_flowrate\":global.get(\"sug_flowrate\")\n }\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 600, + "y": 380, + "wires": [ + [ + "29be525e.0c87fe", + "295bd912.8d2556" + ] + ] + }, + { + "id": "295bd912.8d2556", + "type": "debug", + "z": "baa1e3d9.cb29d", + "name": "", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "false", + "x": 760, + "y": 440, + "wires": [] + }, + { + "id": "7ca7754c.0f731c", + "type": "inject", + "z": "eaae323a.31b3", + "name": "", + "topic": "", + "payload": "", + "payloadType": "date", + "repeat": "", + "crontab": "", + "once": false, + "onceDelay": 0.1, + "x": 120, + "y": 420, + "wires": [ + [ + "4c6d21e3.0173c" + ] + ] + }, + { + "id": "cbb8afed.0a026", + "type": "rpi-gpio out", + "z": "bccd1f23.87219", + "name": "", + "pin": "40", + "set": "", + "level": "0", + "freq": "", + "out": "out", + "x": 280, + "y": 80, + "wires": [] + }, + { + "id": "4c6d21e3.0173c", + "type": "function", + "z": "eaae323a.31b3", + "name": "", + "func": "var d = new Date();\nvar t = d.getTime();\npayload={\"time\":\"message\",\"timestamp\":msg.payload}\nmsg.payload=payload;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 250, + "y": 420, + "wires": [ + [ + "c82b48ad.8b5478" + ] + ] + }, + { + "id": "a256071b.25a008", + "type": "file", + "z": "eaae323a.31b3", + "name": "", + "filename": "/home/pi/Desktop/log/test.log", + "appendNewline": true, + "createDir": true, + "overwriteFile": "false", + "encoding": "none", + "x": 600, + "y": 420, + "wires": [ + [ + "3cd4bf1e.11ae3" + ] + ] + }, + { + "id": "3cd4bf1e.11ae3", + "type": "debug", + "z": "eaae323a.31b3", + "name": "", + "active": true, + "tosidebar": true, + "console": false, + "tostatus": false, + "complete": "false", + "x": 950, + "y": 420, + "wires": [] + }, + { + "id": "c82b48ad.8b5478", + "type": "csv", + "z": "eaae323a.31b3", + "name": "", + "sep": ",", + "hdrin": true, + "hdrout": "", + "multi": "one", + "ret": "\\n", + "temp": "timestamp,time", + "skip": "0", + "strings": true, + "x": 390, + "y": 420, + "wires": [ + [ + "a256071b.25a008" + ] + ] + } +]