From fd3ebd1ff75e897bfbb2b864f7be60341ccb9ac6 Mon Sep 17 00:00:00 2001 From: tpollina Date: Sat, 14 Dec 2019 20:37:53 -0800 Subject: [PATCH] Update flows_planktonscope.json --- scripts/flows_planktonscope.json | 675 ++++++++++++++++--------------- 1 file changed, 341 insertions(+), 334 deletions(-) diff --git a/scripts/flows_planktonscope.json b/scripts/flows_planktonscope.json index 2d74997..b9e09cb 100644 --- a/scripts/flows_planktonscope.json +++ b/scripts/flows_planktonscope.json @@ -6,13 +6,6 @@ "disabled": false, "info": "" }, - { - "id": "4e7b0c26.1eecb4", - "type": "tab", - "label": "Flow 2", - "disabled": false, - "info": "" - }, { "id": "b2d230de.b7751", "type": "ui_base", @@ -86,11 +79,10 @@ } }, "angularTheme": { - "primary": "purple", - "accents": "pink", - "warn": "indigo", - "background": "deep-purple", - "palette": "dark" + "primary": "indigo", + "accents": "blue", + "warn": "red", + "background": "grey" } }, "site": { @@ -126,22 +118,22 @@ "id": "c627ea8d.f886e8", "type": "ui_group", "z": "", - "name": "General", + "name": "Sample", "tab": "6b01f851.598028", "order": 1, "disp": true, - "width": 5, + "width": 6, "collapse": false }, { "id": "c62ffbd3.787ef8", "type": "ui_group", "z": "", - "name": "Preview", + "name": "Controller", "tab": "6b01f851.598028", - "order": 2, + "order": 5, "disp": true, - "width": 12, + "width": "12", "collapse": false }, { @@ -152,7 +144,7 @@ "tab": "6b01f851.598028", "order": 3, "disp": true, - "width": 8, + "width": "7", "collapse": false }, { @@ -163,7 +155,7 @@ "tab": "6b01f851.598028", "order": 4, "disp": true, - "width": 5, + "width": 6, "collapse": false }, { @@ -172,22 +164,73 @@ "z": "", "name": "Spatio Temporal", "tab": "6b01f851.598028", - "order": 5, + "order": 6, "disp": true, - "width": 8, + "width": 7, "collapse": false }, { "id": "77a6994b.e3efb8", "type": "ui_group", "z": "", - "name": "General", + "name": "Generic info", "tab": "6b01f851.598028", - "order": 6, + "order": 7, "disp": true, - "width": 5, + "width": 6, "collapse": false }, + { + "id": "79767bcc.30bb94", + "type": "ui_group", + "z": "", + "name": "Reminder", + "tab": "6b01f851.598028", + "order": 9, + "disp": true, + "width": 25, + "collapse": false + }, + { + "id": "a61f7be8.af6418", + "type": "ui_group", + "z": "", + "name": "Acquisition", + "tab": "6b01f851.598028", + "order": 8, + "disp": true, + "width": 12, + "collapse": false + }, + { + "id": "3d740a07.4674e6", + "type": "ui_group", + "z": "", + "name": "Preview", + "tab": "6b01f851.598028", + "order": 2, + "disp": true, + "width": 12, + "collapse": false + }, + { + "id": "7a3248ea.67b168", + "type": "ui_spacer", + "name": "spacer", + "group": "106f0e1b.6478a2", + "order": 8, + "width": 1, + "height": "1" + }, + { + "id": "4b4609c1.e7ed68", + "type": "ui_spacer", + "name": "spacer", + "group": "832434ce.ebe498", + "order": 8, + "width": 1, + "height": 1 + }, { "id": "955fdac.f54f328", "type": "ui_text_input", @@ -618,7 +661,7 @@ "label": "Light", "tooltip": "", "group": "c62ffbd3.787ef8", - "order": 2, + "order": 1, "width": 2, "height": 1, "passthru": true, @@ -634,7 +677,7 @@ "officon": "", "offcolor": "", "x": 510, - "y": 100, + "y": 160, "wires": [ [ "b5a366b4.cb6918" @@ -653,7 +696,7 @@ "oldrc": false, "name": "light.py", "x": 820, - "y": 100, + "y": 160, "wires": [ [], [], @@ -667,7 +710,7 @@ "z": "7f885510.6173fc", "name": "up", "group": "c62ffbd3.787ef8", - "order": 4, + "order": 3, "width": 1, "height": 1, "passthru": false, @@ -680,7 +723,7 @@ "payloadType": "str", "topic": "up", "x": 530, - "y": 220, + "y": 280, "wires": [ [ "523fdeaa.50c6c" @@ -693,7 +736,7 @@ "z": "7f885510.6173fc", "name": "down", "group": "c62ffbd3.787ef8", - "order": 6, + "order": 5, "width": 1, "height": 1, "passthru": true, @@ -706,7 +749,7 @@ "payloadType": "str", "topic": "down", "x": 530, - "y": 300, + "y": 360, "wires": [ [ "523fdeaa.50c6c" @@ -721,7 +764,7 @@ "label": "nb step (30μm/step)", "tooltip": "", "group": "c62ffbd3.787ef8", - "order": 5, + "order": 4, "width": 3, "height": 1, "passthru": false, @@ -729,7 +772,7 @@ "delay": 300, "topic": "nb_step", "x": 520, - "y": 260, + "y": 320, "wires": [ [ "523fdeaa.50c6c" @@ -742,7 +785,7 @@ "z": "7f885510.6173fc", "name": "kill_focus", "group": "c62ffbd3.787ef8", - "order": 7, + "order": 6, "width": 3, "height": 1, "passthru": false, @@ -755,7 +798,7 @@ "payloadType": "str", "topic": "", "x": 520, - "y": 340, + "y": 400, "wires": [ [ "d9dea2bc.47097" @@ -771,7 +814,7 @@ "outputs": 1, "noerr": 0, "x": 670, - "y": 260, + "y": 320, "wires": [ [ "ada728bd.8e7818" @@ -791,7 +834,7 @@ "oldrc": false, "name": "focus.py", "x": 820, - "y": 260, + "y": 320, "wires": [ [], [], @@ -811,7 +854,7 @@ "oldrc": false, "name": "Kill Focus", "x": 820, - "y": 340, + "y": 400, "wires": [ [], [], @@ -828,7 +871,7 @@ "order": 7, "width": 0, "height": 0, - "format": "\n", + "format": "\n", "storeOutMessages": true, "fwdInMessages": true, "templateScope": "local", @@ -918,7 +961,7 @@ "id": "53ec5f97.7567c", "type": "ui_template", "z": "7f885510.6173fc", - "group": "c62ffbd3.787ef8", + "group": "3d740a07.4674e6", "name": "Stream Pi Camera", "order": 1, "width": 0, @@ -941,7 +984,7 @@ "label": "Fan", "tooltip": "", "group": "c62ffbd3.787ef8", - "order": 3, + "order": 2, "width": 2, "height": 1, "passthru": true, @@ -957,7 +1000,7 @@ "officon": "", "offcolor": "", "x": 520, - "y": 160, + "y": 220, "wires": [ [ "dec2b84a.6faa18" @@ -976,7 +1019,7 @@ "oldrc": false, "name": "fan.py", "x": 810, - "y": 160, + "y": 220, "wires": [ [], [], @@ -984,29 +1027,6 @@ ], "icon": "font-awesome/fa-spinner" }, - { - "id": "7923e634.673cd8", - "type": "ui_text_input", - "z": "7f885510.6173fc", - "name": "in_path", - "label": "Directory*", - "tooltip": "", - "group": "c62ffbd3.787ef8", - "order": 12, - "width": 6, - "height": 1, - "passthru": true, - "mode": "text", - "delay": 300, - "topic": "in_path", - "x": 520, - "y": 580, - "wires": [ - [ - "263878b3.e0a478" - ] - ] - }, { "id": "477dc1bd.c3de8", "type": "ui_text_input", @@ -1014,16 +1034,16 @@ "name": "acq_id", "label": "Acquisition ID*", "tooltip": "", - "group": "c62ffbd3.787ef8", - "order": 13, - "width": 6, + "group": "a61f7be8.af6418", + "order": 2, + "width": "12", "height": 1, "passthru": true, "mode": "text", "delay": 300, "topic": "acq_id", "x": 530, - "y": 620, + "y": 680, "wires": [ [ "263878b3.e0a478" @@ -1147,14 +1167,14 @@ "tooltip": "", "group": "106f0e1b.6478a2", "order": 3, - "width": 3, + "width": 2, "height": 1, "wrap": false, "passthru": true, "topic": "sample_year", "format": "{{value}}", - "min": "2019", - "max": "2050", + "min": "19", + "max": "50", "step": 1, "x": 1010, "y": 480, @@ -1225,7 +1245,7 @@ "tooltip": "", "group": "106f0e1b.6478a2", "order": 4, - "width": 5, + "width": 4, "height": 1, "wrap": false, "passthru": true, @@ -1305,247 +1325,18 @@ "outputs": 1, "noerr": 0, "x": 680, - "y": 600, + "y": 660, "wires": [ [] ] }, - { - "id": "f84c662c.df8248", - "type": "function", - "z": "4e7b0c26.1eecb4", - "name": "Image", - "func": "var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\nvar acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"start\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id, flowrate].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}", - "outputs": 1, - "noerr": 0, - "x": 370, - "y": 480, - "wires": [ - [ - "802532e3.f89bc", - "dd01a090.6bec9" - ] - ], - "info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n " - }, - { - "id": "9ac0625a.53e68", - "type": "exec", - "z": "4e7b0c26.1eecb4", - "command": "python3.7 $HOME/PlanktonScope/scripts/image.py", - "addpay": true, - "append": "", - "useSpawn": "false", - "timer": "", - "oldrc": false, - "name": "image.py", - "x": 760, - "y": 420, - "wires": [ - [], - [], - [] - ], - "icon": "node-red/arrow-in.svg" - }, - { - "id": "6b594814.3fa0b8", - "type": "exec", - "z": "4e7b0c26.1eecb4", - "command": "bash $HOME/RPi_Cam_Web_Interface/stop.sh", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "", - "oldrc": false, - "name": "Kill RPi Web Interface", - "x": 800, - "y": 500, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "802532e3.f89bc", - "type": "delay", - "z": "4e7b0c26.1eecb4", - "name": "", - "pauseType": "delay", - "timeout": "5", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "x": 600, - "y": 440, - "wires": [ - [ - "9ac0625a.53e68" - ] - ] - }, - { - "id": "1500affd.e4407", - "type": "exec", - "z": "4e7b0c26.1eecb4", - "command": "bash $HOME/RPi_Cam_Web_Interface/start.sh", - "addpay": true, - "append": "", - "useSpawn": "false", - "timer": "", - "oldrc": false, - "name": "Restart RPi Web Interface", - "x": 810, - "y": 580, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "dd01a090.6bec9", - "type": "delay", - "z": "4e7b0c26.1eecb4", - "name": "", - "pauseType": "delay", - "timeout": "2", - "timeoutUnits": "seconds", - "rate": "1", - "nbRateUnits": "1", - "rateUnits": "second", - "randomFirst": "1", - "randomLast": "5", - "randomUnits": "seconds", - "drop": false, - "x": 600, - "y": 500, - "wires": [ - [ - "6b594814.3fa0b8" - ] - ] - }, - { - "id": "c1091e12.4fe17", - "type": "function", - "z": "4e7b0c26.1eecb4", - "name": "wait", - "func": "var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n duration = String('500');\n break;\n case \"16\":\n duration = String('620');\n break;\n case \"12\":\n duration = String('1170');\n break;\n case \"8\":\n duration = String('3450');\n break;\n case \"6\":\n duration = String('4520');\n break;\n}\n\nmsg.payload = duration;\nreturn msg;", - "outputs": 1, - "noerr": 0, - "x": 610, - "y": 560, - "wires": [ - [ - "1500affd.e4407" - ] - ] - }, - { - "id": "46d0bcb6.694744", - "type": "exec", - "z": "4e7b0c26.1eecb4", - "command": "bash $HOME/PlanktonScope/scripts/kill_image.sh", - "addpay": true, - "append": "", - "useSpawn": "false", - "timer": "", - "oldrc": false, - "name": "Kill Image", - "x": 760, - "y": 640, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "182d9940.d0c327", - "type": "function", - "z": "4e7b0c26.1eecb4", - "name": "Image", - "func": "var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"stop\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}", - "outputs": 1, - "noerr": 0, - "x": 610, - "y": 640, - "wires": [ - [ - "46d0bcb6.694744" - ] - ], - "info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n " - }, - { - "id": "ddc97106.8b2e7", - "type": "exec", - "z": "4e7b0c26.1eecb4", - "command": "python3.7 $HOME/PlanktonScope/scripts/pump.py", - "addpay": true, - "append": "", - "useSpawn": "false", - "timer": "", - "oldrc": false, - "name": "pump.py", - "x": 760, - "y": 360, - "wires": [ - [], - [], - [] - ] - }, - { - "id": "f5e45860.0bc0d8", - "type": "function", - "z": "4e7b0c26.1eecb4", - "name": "Image", - "func": "var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nif(msg.topic === \"start\"){\n \n msg.payload = [\"24\", flowrate, \"foward\"].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}", - "outputs": 1, - "noerr": 0, - "x": 470, - "y": 400, - "wires": [ - [ - "ddc97106.8b2e7" - ] - ], - "info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n " - }, - { - "id": "d324c4b.31afb38", - "type": "exec", - "z": "4e7b0c26.1eecb4", - "command": "bash $HOME/PlanktonScope/scripts/killer.sh pump.py && bash $HOME/PlanktonScope/scripts/killer.sh pump.py", - "addpay": false, - "append": "", - "useSpawn": "false", - "timer": "", - "oldrc": false, - "name": "Kill Pump", - "x": 760, - "y": 700, - "wires": [ - [], - [], - [] - ] - }, { "id": "4b3ea5bd.03248c", "type": "ui_button", "z": "7f885510.6173fc", "name": "backward", "group": "c62ffbd3.787ef8", - "order": 8, + "order": 7, "width": 3, "height": 1, "passthru": false, @@ -1558,7 +1349,7 @@ "payloadType": "str", "topic": "backward", "x": 520, - "y": 400, + "y": 460, "wires": [ [ "84fd85fd.426878" @@ -1571,7 +1362,7 @@ "z": "7f885510.6173fc", "name": "foward", "group": "c62ffbd3.787ef8", - "order": 10, + "order": 9, "width": 3, "height": 1, "passthru": true, @@ -1584,7 +1375,7 @@ "payloadType": "str", "topic": "foward", "x": 530, - "y": 480, + "y": 540, "wires": [ [ "84fd85fd.426878" @@ -1599,7 +1390,7 @@ "label": "Volume (ml)*", "tooltip": "", "group": "c62ffbd3.787ef8", - "order": 9, + "order": 8, "width": 3, "height": 1, "passthru": false, @@ -1607,7 +1398,7 @@ "delay": 300, "topic": "volume", "x": 520, - "y": 440, + "y": 500, "wires": [ [ "84fd85fd.426878" @@ -1620,7 +1411,7 @@ "z": "7f885510.6173fc", "name": "kill_pump", "group": "c62ffbd3.787ef8", - "order": 11, + "order": 10, "width": 3, "height": 1, "passthru": false, @@ -1633,7 +1424,7 @@ "payloadType": "str", "topic": "", "x": 520, - "y": 520, + "y": 580, "wires": [ [ "8fc930df.c7ae6" @@ -1649,7 +1440,7 @@ "outputs": 1, "noerr": 0, "x": 670, - "y": 440, + "y": 500, "wires": [ [ "649f7ec8.06a84" @@ -1669,7 +1460,7 @@ "oldrc": false, "name": "pump.py", "x": 820, - "y": 440, + "y": 500, "wires": [ [], [], @@ -1689,7 +1480,7 @@ "oldrc": false, "name": "Kill Pump", "x": 820, - "y": 520, + "y": 580, "wires": [ [], [], @@ -1703,7 +1494,7 @@ "z": "7f885510.6173fc", "group": "77a6994b.e3efb8", "name": "Device ID", - "order": 3, + "order": 4, "width": 0, "height": 0, "format": "
\n Device ID :\n \n Odezenne\n \n
", @@ -1721,8 +1512,8 @@ "type": "ui_button", "z": "7f885510.6173fc", "name": "start", - "group": "c62ffbd3.787ef8", - "order": 14, + "group": "a61f7be8.af6418", + "order": 3, "width": 6, "height": 1, "passthru": false, @@ -1735,10 +1526,13 @@ "payloadType": "str", "topic": "start", "x": 530, - "y": 680, + "y": 760, "wires": [ [ - "3fe055c2.6ab7da" + "3fe055c2.6ab7da", + "82c90711.145108", + "e1dbc623.8df898", + "5a95f150.76ab3" ] ] }, @@ -1747,8 +1541,8 @@ "type": "ui_button", "z": "7f885510.6173fc", "name": "cancel", - "group": "c62ffbd3.787ef8", - "order": 15, + "group": "a61f7be8.af6418", + "order": 4, "width": 6, "height": 1, "passthru": false, @@ -1761,10 +1555,13 @@ "payloadType": "str", "topic": "cancel", "x": 530, - "y": 740, + "y": 980, "wires": [ [ - "f2acb5e0.c2c898" + "f2acb5e0.c2c898", + "2bfa509a.9fc06", + "a2a07a68.274a78", + "4cd6d848.672778" ] ] }, @@ -1773,13 +1570,13 @@ "type": "file", "z": "7f885510.6173fc", "name": "logs.json", - "filename": "/home/pi/PlanktonScope/logs.json", + "filename": "/var/www/logs.json", "appendNewline": true, "createDir": false, "overwriteFile": "false", "encoding": "none", "x": 820, - "y": 680, + "y": 760, "wires": [ [] ] @@ -1793,7 +1590,7 @@ "outputs": 1, "noerr": 0, "x": 680, - "y": 680, + "y": 760, "wires": [ [ "b0fda998.f0ad48" @@ -1811,8 +1608,8 @@ "timer": "", "oldrc": false, "name": "Remove last log", - "x": 840, - "y": 740, + "x": 700, + "y": 1000, "wires": [ [], [], @@ -1821,23 +1618,233 @@ "icon": "font-awesome/fa-close" }, { - "id": "546bd06b.de8ae", + "id": "2bfa509a.9fc06", + "type": "link out", + "z": "7f885510.6173fc", + "name": "cancel_pump", + "links": [ + "eadbf812.3ea798" + ], + "x": 635, + "y": 940, + "wires": [] + }, + { + "id": "eadbf812.3ea798", + "type": "link in", + "z": "7f885510.6173fc", + "name": "", + "links": [ + "2bfa509a.9fc06" + ], + "x": 715, + "y": 600, + "wires": [ + [ + "8fc930df.c7ae6" + ] + ] + }, + { + "id": "217d8bc.8fb7374", + "type": "ui_template", + "z": "7f885510.6173fc", + "group": "79767bcc.30bb94", + "name": "Instructions", + "order": 1, + "width": 0, + "height": 0, + "format": "

In case you forget dude but it's important to read this whenever you are not sure before clicking on any buttons.

\n
\n

Focusing :

\n

To focus, you need to specify a value for the number of steps. Then, you can click once but wait while the stage is moving.

\n

To cancel a focusing, click once on CANCEL FOCUS.

\n
\n

Pumping manually :

\n

To focus, you need to specify a value for the volume. Then, you can click once in order to pump manually a defined volume in a certain direction.

\n

To cancel a pumping event, click once on CANCEL PUMP.

\n

Do not run an acquisition if you are using the pump manually.

\n
\n

Start Acquisition :

\n

Taking images will requires few inputs :

\n
    \n
  1. Name of the project
    2. \n
  2. Name of the station
    3. \n
  3. Directory
    4. \n
  4. Acquisition ID
    5. \n
  5. Volume
    6. \n
  6. M12 Lens
    7. \n
\n

If any of the previous settings are missing, it's going to be a real mess and delete previous acquisition. So check twice here !!

\n

The other inputs are always welcome ;)

\n
\n

Cancel Acquisition :

\n

I made this button CANCEL ACQUISITION to cancel an acquisition which maybe be fucked.

\n

Image you click it, it's going to delete the folder in which you save this acquisition, meaning execute :

\n

rm -r  Directory/Name_of_the_project/Name_of_the_station/Acquisition_ID

\n

So if you made a great acquisition, then run a new one with the same input for Acquisition ID and finally click on this button, you are going to delete them both.

\n

Don't use it if you don't need it and please never click twice because the pi might burn.

\n

 

", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 570, + "y": 1180, + "wires": [ + [] + ] + }, + { + "id": "82c90711.145108", + "type": "function", + "z": "7f885510.6173fc", + "name": "image", + "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar acq_id= global.get(\"acq_id\");\nvar volume= global.get(\"volume\");\nvar flowrate= global.get(\"flowrate\");\nmsg.payload = \"/var/www/\"+sample_project+\"/\"+sample_id+\"/\"+acq_id+\" \"+volume+\" \"+flowrate\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 670, + "y": 800, + "wires": [ + [ + "38c8440d.d0139c" + ] + ] + }, + { + "id": "1e9ae141.a0729f", "type": "exec", "z": "7f885510.6173fc", - "command": "python3.7 $HOME/PlanktonScope/scripts/pump.py", + "command": "python3.7 $HOME/PlanktonScope/scripts/image.py", "addpay": true, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, - "name": "pump.py", - "x": 820, + "name": "image.py", + "x": 960, "y": 800, "wires": [ [], [], [] ], - "icon": "font-awesome/fa-rotate-left" + "icon": "font-awesome/fa-file-image-o" + }, + { + "id": "7d2d5235.35f5ec", + "type": "exec", + "z": "7f885510.6173fc", + "command": "bash /home/pi/PlanktonScope/scripts/kill_image.sh", + "addpay": true, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "Kill Image", + "x": 840, + "y": 1060, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "a2a07a68.274a78", + "type": "function", + "z": "7f885510.6173fc", + "name": "get global", + "func": "var in_path= global.get(\"in_path\");\nvar sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar acq_id= global.get(\"acq_id\");\nmsg.payload = \"/var/www/\"+sample_project+\"/\"+sample_id+\"/\"+acq_id\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 680, + "y": 1060, + "wires": [ + [ + "7d2d5235.35f5ec" + ] + ] + }, + { + "id": "e1dbc623.8df898", + "type": "exec", + "z": "7f885510.6173fc", + "command": "bash /home/pi/RPi_Cam_Web_Interface/stop.sh", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "Stop RPi Web Interface", + "x": 730, + "y": 860, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "597635eb.72154c", + "type": "exec", + "z": "7f885510.6173fc", + "command": "bash /home/pi/RPi_Cam_Web_Interface/start.sh", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "Start RPi Web Interface", + "x": 890, + "y": 1120, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "4cd6d848.672778", + "type": "delay", + "z": "7f885510.6173fc", + "name": "", + "pauseType": "delay", + "timeout": "2", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "x": 680, + "y": 1120, + "wires": [ + [ + "597635eb.72154c" + ] + ] + }, + { + "id": "38c8440d.d0139c", + "type": "delay", + "z": "7f885510.6173fc", + "name": "", + "pauseType": "delay", + "timeout": "2", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "x": 820, + "y": 800, + "wires": [ + [ + "1e9ae141.a0729f" + ] + ] + }, + { + "id": "5a95f150.76ab3", + "type": "link out", + "z": "7f885510.6173fc", + "name": "start_pump", + "links": [ + "5da0773a.700338" + ], + "x": 635, + "y": 720, + "wires": [] + }, + { + "id": "5da0773a.700338", + "type": "link in", + "z": "7f885510.6173fc", + "name": "", + "links": [ + "5a95f150.76ab3" + ], + "x": 715, + "y": 540, + "wires": [ + [ + "649f7ec8.06a84" + ] + ] } ]