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"width": 0,
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"format": "\n Flowrate :\n \n ml/min\n
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"storeOutMessages": true,
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{
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"tooltip": "",
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{
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"command": "python3.7 $HOME/PlanktonScope/scripts/fan.py",
"addpay": true,
"append": "",
"useSpawn": "false",
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"name": "fan.py",
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{
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{
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},
{
"id": "44969aec.4e87e4",
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"name": "get sug_min",
"func": "var sug_min = global.get(\"sug_min\");\nmsg.payload = sug_min;\nreturn msg;",
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"x": 1390,
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"wires": [
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},
{
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"name": "get sug_max",
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"x": 1390,
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{
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"name": "get flowrate",
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{
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},
{
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"width": 3,
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"wrap": false,
"passthru": true,
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"min": "2019",
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"wrap": false,
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"name": "sample_day",
"label": "Date*",
"tooltip": "",
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"order": 1,
"width": 3,
"height": 1,
"wrap": false,
"passthru": true,
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"name": "sample_minute",
"label": ":",
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"group": "106f0e1b.6478a2",
"order": 5,
"width": 3,
"height": 1,
"wrap": false,
"passthru": true,
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"name": "set global",
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"x": 340,
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"wires": [
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},
{
"id": "a8cb0c6e.7220d",
"type": "function",
"z": "7f885510.6173fc",
"name": "store generic",
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"outputs": 1,
"noerr": 0,
"x": 350,
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"wires": [
[]
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},
{
"id": "263878b3.e0a478",
"type": "function",
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"name": "set global",
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{
"id": "f84c662c.df8248",
"type": "function",
"z": "4e7b0c26.1eecb4",
"name": "Image",
"func": "var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\nvar acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"start\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id, flowrate].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}",
"outputs": 1,
"noerr": 0,
"x": 370,
"y": 480,
"wires": [
[
"802532e3.f89bc",
"dd01a090.6bec9"
]
],
"info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "
},
{
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"type": "exec",
"z": "4e7b0c26.1eecb4",
"command": "python3.7 $HOME/PlanktonScope/scripts/image.py",
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"name": "image.py",
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],
"icon": "node-red/arrow-in.svg"
},
{
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"type": "exec",
"z": "4e7b0c26.1eecb4",
"command": "bash $HOME/RPi_Cam_Web_Interface/stop.sh",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Kill RPi Web Interface",
"x": 800,
"y": 500,
"wires": [
[],
[],
[]
]
},
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"type": "delay",
"z": "4e7b0c26.1eecb4",
"name": "",
"pauseType": "delay",
"timeout": "5",
"timeoutUnits": "seconds",
"rate": "1",
"nbRateUnits": "1",
"rateUnits": "second",
"randomFirst": "1",
"randomLast": "5",
"randomUnits": "seconds",
"drop": false,
"x": 600,
"y": 440,
"wires": [
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},
{
"id": "1500affd.e4407",
"type": "exec",
"z": "4e7b0c26.1eecb4",
"command": "bash $HOME/RPi_Cam_Web_Interface/start.sh",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Restart RPi Web Interface",
"x": 810,
"y": 580,
"wires": [
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[]
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},
{
"id": "dd01a090.6bec9",
"type": "delay",
"z": "4e7b0c26.1eecb4",
"name": "",
"pauseType": "delay",
"timeout": "2",
"timeoutUnits": "seconds",
"rate": "1",
"nbRateUnits": "1",
"rateUnits": "second",
"randomFirst": "1",
"randomLast": "5",
"randomUnits": "seconds",
"drop": false,
"x": 600,
"y": 500,
"wires": [
[
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},
{
"id": "c1091e12.4fe17",
"type": "function",
"z": "4e7b0c26.1eecb4",
"name": "wait",
"func": "var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n duration = String('500');\n break;\n case \"16\":\n duration = String('620');\n break;\n case \"12\":\n duration = String('1170');\n break;\n case \"8\":\n duration = String('3450');\n break;\n case \"6\":\n duration = String('4520');\n break;\n}\n\nmsg.payload = duration;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"x": 610,
"y": 560,
"wires": [
[
"1500affd.e4407"
]
]
},
{
"id": "46d0bcb6.694744",
"type": "exec",
"z": "4e7b0c26.1eecb4",
"command": "bash $HOME/PlanktonScope/scripts/kill_image.sh",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Kill Image",
"x": 760,
"y": 640,
"wires": [
[],
[],
[]
]
},
{
"id": "182d9940.d0c327",
"type": "function",
"z": "4e7b0c26.1eecb4",
"name": "Image",
"func": "var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"stop\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}",
"outputs": 1,
"noerr": 0,
"x": 610,
"y": 640,
"wires": [
[
"46d0bcb6.694744"
]
],
"info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "
},
{
"id": "ddc97106.8b2e7",
"type": "exec",
"z": "4e7b0c26.1eecb4",
"command": "python3.7 $HOME/PlanktonScope/scripts/pump.py",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "pump.py",
"x": 760,
"y": 360,
"wires": [
[],
[],
[]
]
},
{
"id": "f5e45860.0bc0d8",
"type": "function",
"z": "4e7b0c26.1eecb4",
"name": "Image",
"func": "var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nif(msg.topic === \"start\"){\n \n msg.payload = [\"24\", flowrate, \"foward\"].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}",
"outputs": 1,
"noerr": 0,
"x": 470,
"y": 400,
"wires": [
[
"ddc97106.8b2e7"
]
],
"info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "
},
{
"id": "d324c4b.31afb38",
"type": "exec",
"z": "4e7b0c26.1eecb4",
"command": "bash $HOME/PlanktonScope/scripts/killer.sh pump.py && bash $HOME/PlanktonScope/scripts/killer.sh pump.py",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Kill Pump",
"x": 760,
"y": 700,
"wires": [
[],
[],
[]
]
},
{
"id": "4b3ea5bd.03248c",
"type": "ui_button",
"z": "7f885510.6173fc",
"name": "backward",
"group": "c62ffbd3.787ef8",
"order": 8,
"width": 3,
"height": 1,
"passthru": false,
"label": "Backward",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "arrow_back",
"payload": "backward",
"payloadType": "str",
"topic": "backward",
"x": 520,
"y": 400,
"wires": [
[
"84fd85fd.426878"
]
]
},
{
"id": "cfe9783a.286438",
"type": "ui_button",
"z": "7f885510.6173fc",
"name": "foward",
"group": "c62ffbd3.787ef8",
"order": 10,
"width": 3,
"height": 1,
"passthru": true,
"label": "Forward",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "arrow_forward",
"payload": "foward",
"payloadType": "str",
"topic": "foward",
"x": 530,
"y": 480,
"wires": [
[
"84fd85fd.426878"
]
]
},
{
"id": "f94950fb.4454f",
"type": "ui_text_input",
"z": "7f885510.6173fc",
"name": "volume",
"label": "Volume (ml)*",
"tooltip": "",
"group": "c62ffbd3.787ef8",
"order": 9,
"width": 3,
"height": 1,
"passthru": false,
"mode": "number",
"delay": 300,
"topic": "volume",
"x": 520,
"y": 440,
"wires": [
[
"84fd85fd.426878"
]
]
},
{
"id": "83d75b6b.6afa28",
"type": "ui_button",
"z": "7f885510.6173fc",
"name": "kill_pump",
"group": "c62ffbd3.787ef8",
"order": 11,
"width": 3,
"height": 1,
"passthru": false,
"label": "Cancel pump",
"tooltip": "",
"color": "#AD1625",
"bgcolor": "#333333",
"icon": "pause",
"payload": "",
"payloadType": "str",
"topic": "",
"x": 520,
"y": 520,
"wires": [
[
"8fc930df.c7ae6"
]
]
},
{
"id": "84fd85fd.426878",
"type": "function",
"z": "7f885510.6173fc",
"name": "pump",
"func": "if(msg.topic === \"volume\"){\n volume = msg.payload;\n global.set(\"volume\",volume);\n}\nif(msg.topic === \"foward\"){\n\n volume = global.get(\"volume\");\n flowrate = global.get(\"flowrate\");\n\n action = \" foward\";\n\n msg.payload = String(volume).concat(' ',flowrate, action);\n return msg;\n}\nif(msg.topic === \"backward\"){\n \n volume = global.get(\"volume\");\n flowrate = global.get(\"flowrate\");\n\n action = \" backward\";\n msg.payload = String(volume).concat(' ',flowrate, action);\n\n return msg;\n}\n\n",
"outputs": 1,
"noerr": 0,
"x": 670,
"y": 440,
"wires": [
[
"649f7ec8.06a84"
]
],
"info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
},
{
"id": "649f7ec8.06a84",
"type": "exec",
"z": "7f885510.6173fc",
"command": "python3.7 $HOME/PlanktonScope/scripts/pump.py",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "pump.py",
"x": 820,
"y": 440,
"wires": [
[],
[],
[]
],
"icon": "font-awesome/fa-rotate-left"
},
{
"id": "8fc930df.c7ae6",
"type": "exec",
"z": "7f885510.6173fc",
"command": "bash $HOME/PlanktonScope/scripts/killer.sh pump.py && bash $HOME/PlanktonScope/scripts/killer.sh pump.py",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Kill Pump",
"x": 820,
"y": 520,
"wires": [
[],
[],
[]
],
"icon": "font-awesome/fa-stop"
},
{
"id": "13ad31b4.5b682e",
"type": "ui_template",
"z": "7f885510.6173fc",
"group": "77a6994b.e3efb8",
"name": "Device ID",
"order": 3,
"width": 0,
"height": 0,
"format": "\n Device ID :\n \n Odezenne\n \n
",
"storeOutMessages": true,
"fwdInMessages": true,
"templateScope": "local",
"x": 180,
"y": 540,
"wires": [
[]
]
},
{
"id": "6bf10b4c.c83c84",
"type": "ui_button",
"z": "7f885510.6173fc",
"name": "start",
"group": "c62ffbd3.787ef8",
"order": 14,
"width": 6,
"height": 1,
"passthru": false,
"label": "Start Acquisition",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "play_circle_fill",
"payload": "",
"payloadType": "str",
"topic": "start",
"x": 530,
"y": 680,
"wires": [
[
"3fe055c2.6ab7da"
]
]
},
{
"id": "2c9498e7.bf0c38",
"type": "ui_button",
"z": "7f885510.6173fc",
"name": "cancel",
"group": "c62ffbd3.787ef8",
"order": 15,
"width": 6,
"height": 1,
"passthru": false,
"label": "Cancel Acquisition",
"tooltip": "",
"color": "#AD1625",
"bgcolor": "#333333",
"icon": "pause_circle_filled",
"payload": "",
"payloadType": "str",
"topic": "cancel",
"x": 530,
"y": 740,
"wires": [
[
"f2acb5e0.c2c898"
]
]
},
{
"id": "b0fda998.f0ad48",
"type": "file",
"z": "7f885510.6173fc",
"name": "logs.json",
"filename": "/home/pi/PlanktonScope/logs.json",
"appendNewline": true,
"createDir": false,
"overwriteFile": "false",
"encoding": "none",
"x": 820,
"y": 680,
"wires": [
[]
]
},
{
"id": "3fe055c2.6ab7da",
"type": "function",
"z": "7f885510.6173fc",
"name": "get global",
"func": "msg.payload = {\n \"sample\":{\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \"sample_hour\":global.get(\"sample_hour\"),\n \"sample_minute\":global.get(\"sample_minute\"),\n \"sample_day\":global.get(\"sample_day\"),\n \"sample_month\":global.get(\"sample_month\"),\n \"sample_year\":global.get(\"sample_year\")\n },\n \"object\":{\n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\")\n },\n \"acquisition\":{\n \"acq_id\":global.get(\"acq_id\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"process_pixel\":global.get(\"process_pixel\"),\n \"acq_camera\":global.get(\"acq_camera\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_instrument_ID\":global.get(\"acq_instrument_ID\")\n },\n \"process\":{\n \"process_pixel\":global.get(\"process_pixel\")\n }\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"x": 680,
"y": 680,
"wires": [
[
"b0fda998.f0ad48"
]
]
},
{
"id": "f2acb5e0.c2c898",
"type": "exec",
"z": "7f885510.6173fc",
"command": "sed -ie '$d' /home/pi/PlanktonScope/logs.json",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Remove last log",
"x": 840,
"y": 740,
"wires": [
[],
[],
[]
],
"icon": "font-awesome/fa-close"
},
{
"id": "546bd06b.de8ae",
"type": "exec",
"z": "7f885510.6173fc",
"command": "python3.7 $HOME/PlanktonScope/scripts/pump.py",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "pump.py",
"x": 820,
"y": 800,
"wires": [
[],
[],
[]
],
"icon": "font-awesome/fa-rotate-left"
}
]