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"height": 0, "wrap": false, "passthru": true, "topic": "acq_maximum_mesh", "format": "{{value}}", "min": "200", "max": "2000", "step": "100", "x": 536, "y": 200, "wires": [ [] ] }, { "id": "6ecc9468.0271dc", "type": "ui_text_input", "z": "bdd6e33e.5db3b8", "name": "acq_id", "label": "Acquisition unique ID*", "tooltip": "", "group": "52159161.72187", "order": 1, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "acq_id", "x": 586, "y": 40, "wires": [ [] ] }, { "id": "259fd49a.160a3c", "type": "ui_dropdown", "z": "bdd6e33e.5db3b8", "name": "acq_celltype", "label": "Thickness flowcell*", "tooltip": "", "place": "Select option", "group": "52159161.72187", "order": 7, "width": 0, "height": 0, "passthru": true, "options": [ { "label": "200 μm µ-Slide I Luer", "value": 200, "type": "num" }, { "label": "400 μm µ-Slide I Luer", "value": 400, "type": "num" }, { "label": "600 μm µ-Slide I Luer", "value": 600, "type": "num" }, { "label": "800 μm µ-Slide I Luer", "value": 800, "type": "num" } ], "payload": "", "topic": "acq_celltype", "x": 566, "y": 120, "wires": [ [] ] }, { "id": "66a3425c.79aabc", "type": "ui_text_input", "z": "bdd6e33e.5db3b8", "name": "acq_volume", "label": "Volume to pass (ml)", "tooltip": "", "group": "52159161.72187", "order": 2, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "acq_volume", "x": 566, "y": 240, "wires": [ [] ] }, { "id": "5866c9a4.e1ca88", "type": "ui_text_input", "z": "bdd6e33e.5db3b8", "name": "acq_instrument", "label": "Acquisition instrument", "tooltip": "PlanktonScope V2.1", "group": "52159161.72187", "order": 6, "width": 0, "height": 0, "passthru": true, "mode": "text", "delay": 300, "topic": "acq_instrument", "x": 556, "y": 80, "wires": [ [] ] }, { "id": "76a6e6bb.a08b98", "type": "json", "z": "259c8713.b50e28", "name": "", "property": "payload", "action": "str", "pretty": true, "x": 1310, "y": 100, "wires": [ [ "f25890f5.f2549" ] ] }, { "id": "594ec843.9d4458", "type": "file in", "z": "259c8713.b50e28", "name": "", "filename": "/home/pi/PlanktonScope/config.txt", "format": "utf8", "chunk": false, "sendError": false, "encoding": "none", "x": 340, "y": 60, "wires": [ [ "3bc1a977.4e9c76" ] ] }, { "id": "d9ca0e54.f8b58", "type": "inject", "z": "259c8713.b50e28", "name": "on_load", "topic": "", "payload": "", "payloadType": "date", "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "x": 100, "y": 60, "wires": [ [ "594ec843.9d4458", "ca38a11d.0ee54", "807d5cce.2bb1e", "fda01242.9576a8" ] ] }, { "id": "3bc1a977.4e9c76", "type": "json", "z": "259c8713.b50e28", "name": "", "property": "payload", "action": "", "pretty": false, "x": 550, "y": 60, "wires": [ [ "7f101b25.0da4a4", "99b5a67.080f258", "a71ba4a6.c44c4", "fe5585e.a1ab078", "da9f1367.3a17a8", "d8dbecd.f7b3b9", "c986ae96.860ec8" ] ] }, { "id": "2582798f.eddcc6", "type": "function", "z": "173a6e6b.e5ca6a", "name": "get sample_projet", "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 250, "y": 40, "wires": [ [ "a163194f.0b17c8" ] ] }, { "id": "1590a418.9166dc", "type": "function", "z": "173a6e6b.e5ca6a", "name": "get sample_ship", "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 240, "y": 120, "wires": [ [ "6d0d6fc7.d30bb" ] ] }, { "id": "1d28205b.58a37", "type": "function", "z": "173a6e6b.e5ca6a", "name": "get sample_id", "func": "msg.payload = msg.payload.sample_id+1;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 240, "y": 80, "wires": [ [ "914752eb.af1b" ] ] }, { "id": "d96f9fa3.d4cfc", "type": "function", "z": "173a6e6b.e5ca6a", "name": "get sample_operator", "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 260, "y": 160, "wires": [ [ "458408d7.2b3b68" ] ] }, { "id": "784e2f78.9b96f", "type": "function", "z": "173a6e6b.e5ca6a", "name": "get sample_sampling_gear", "func": "msg.payload = msg.payload.sample_sampling_gear;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 280, "y": 200, "wires": [ [ "43b12fe4.c5aa3" ] ] }, { "id": "47459dcd.81b594", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_id", "func": "msg.payload = msg.payload.acq_id+1;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 210, "y": 40, "wires": [ [ "6ecc9468.0271dc" ] ] }, { "id": "eec199a3.a5a768", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_instrument", "func": "msg.payload = msg.payload.acq_instrument;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 230, "y": 80, "wires": [ [ "5866c9a4.e1ca88" ] ] }, { "id": "2d278f0a.1a97a", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_celltype", "func": "msg.payload = msg.payload.acq_celltype;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 220, "y": 120, "wires": [ [ "259fd49a.160a3c" ] ] }, { "id": "4074b907.e527e8", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_minimum_mesh", "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 250, "y": 160, "wires": [ [ "5aba848a.7a861c" ] ] }, { "id": "bc37aba3.0d1e78", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_maximum_mesh", "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 250, "y": 200, "wires": [ [ "7cea16e.c42ace8" ] ] }, { "id": "d973d64a.8801e8", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_volume", "func": "msg.payload = msg.payload.acq_volume;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 220, "y": 240, "wires": [ [ "66a3425c.79aabc" ] ] }, { "id": "bc39179c.bb3c08", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_fnumber_objective", "func": "msg.payload = msg.payload.acq_fnumber_objective;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 260, "y": 360, "wires": [ [ "eb9181d8.25e01" ] ] }, { "id": "47c7db4d.5eb014", "type": "ui_numeric", "z": "ad5a5663.ce893", "name": "object_depth_min", "label": "Minimum depth (m)", "tooltip": "", "group": "cef1e703.bcf3c8", "order": 3, "width": 0, "height": 0, "wrap": false, "passthru": true, "topic": "object_depth_min", "format": "{{value}}", "min": "0", "max": "2000", "step": "1", "x": 610, "y": 120, "wires": [ [] ] }, { "id": "20c46fd4.6b984", "type": "ui_numeric", "z": "ad5a5663.ce893", "name": "object_depth_max", "label": "Maximum depth (m)", "tooltip": "", "group": "cef1e703.bcf3c8", "order": 2, "width": 0, "height": 0, "wrap": false, "passthru": true, "topic": "object_depth_max", "format": "{{value}}", "min": "0", "max": "2000", "step": "1", "x": 610, "y": 160, "wires": [ [] ] }, { "id": "1a5edafb.a05cf5", "type": "function", "z": "259c8713.b50e28", "name": "set global", "func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);\nreturn msg;", "outputs": 1, "noerr": 0, "x": 1020, "y": 60, "wires": [ [ "e001a28.555566" ] ] }, { "id": "21f41837.bb6c88", "type": "function", "z": "ad5a5663.ce893", "name": "get object_depth_min", "func": "msg.payload = msg.payload.object_depth_min;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 304, "y": 120, "wires": [ [ "47c7db4d.5eb014" ] ] }, { "id": "c2f235f2.eee388", "type": "function", "z": "ad5a5663.ce893", "name": "get object_depth_max", "func": "msg.payload = msg.payload.object_depth_max;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 304, "y": 160, "wires": [ [ "20c46fd4.6b984" ] ] }, { "id": "23e45d82.a01f82", "type": "ui_text_input", "z": "4475ba6c.45604c", "name": "process_id", "label": "Id of the process", "tooltip": "", "group": "b1321ea9.cfcf28", "order": 1, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "process_id", "x": 550, "y": 80, "wires": [ [] ] }, { "id": "d899c841.e6c178", "type": "function", "z": "4475ba6c.45604c", "name": "get process_id", "func": "msg.payload = msg.payload.process_id+1;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 200, "y": 80, "wires": [ [ "23e45d82.a01f82" ] ] }, { "id": "4fa9647b.8a2ebc", "type": "gpsd", "z": "ad5a5663.ce893", "name": "", "hostname": "localhost", "port": "2947", "tpv": true, "sky": false, "info": false, "device": false, "gst": false, "att": false, "x": 90, "y": 220, "wires": [ [ "2327c165.8397ae", "bbb7cb31.15121" ] ] }, { "id": "767b43a1.de21dc", "type": "ui_worldmap", "z": "ad5a5663.ce893", "d": true, "group": "cef1e703.bcf3c8", "order": 1, "width": 0, "height": 0, "name": "", "lat": "1.5", "lon": "1.5", "zoom": "4", "layer": "OSM grey", "cluster": "1", "maxage": "", "usermenu": "hide", "layers": "hide", "panit": "false", "panlock": "false", "zoomlock": "false", "hiderightclick": "true", "coords": "deg", "showgrid": "false", "path": "/worldmap", "x": 640, "y": 200, "wires": [] }, { "id": "2327c165.8397ae", "type": "function", "z": "ad5a5663.ce893", "name": "get object_lat & object_lon", "func": "\nreturn msg;", "outputs": 1, "noerr": 0, "x": 320, "y": 200, "wires": [ [ "767b43a1.de21dc" ] ] }, { "id": "fa47061e.34a218", "type": "ui_numeric", "z": "bdd6e33e.5db3b8", "name": "acq_min_esd", "label": "Minimum size to segment (μm)", "tooltip": "", "group": "52159161.72187", "order": 9, "width": 0, "height": 0, "wrap": false, "passthru": true, "topic": "acq_min_esd", "format": "{{value}}", "min": 0, "max": "300", "step": "5", "x": 566, "y": 280, "wires": [ [] ] }, { "id": "6f36bd6d.154d14", "type": "ui_numeric", "z": "bdd6e33e.5db3b8", "name": "acq_max_esd", "label": "Maximum size to segment (μm)", "tooltip": "", "group": "52159161.72187", "order": 5, "width": 0, "height": 0, "wrap": false, "passthru": true, "topic": "acq_max_esd", "format": "{{value}}", "min": "100", "max": "2000", "step": "5", "x": 556, "y": 320, "wires": [ [] ] }, { "id": "277b6764.edb1f8", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_min_esd", "func": "msg.payload = msg.payload.acq_min_esd;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 230, "y": 280, "wires": [ [ "fa47061e.34a218" ] ] }, { "id": "75b10c7c.8433a4", "type": "function", "z": "bdd6e33e.5db3b8", "name": "get acq_max_esd", "func": "msg.payload = msg.payload.acq_max_esd;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 230, "y": 320, "wires": [ [ "6f36bd6d.154d14" ] ] }, { "id": "5f4a72d1.9f6adc", "type": "ui_text_input", "z": "ae90e3e.7d9fba", "name": "nb_step", "label": "Number of step(s)", "tooltip": "", "group": "fbd92986.1028c8", "order": 2, "width": 8, "height": 1, "passthru": true, "mode": "number", "delay": 300, "topic": "nb_step", "x": 520, "y": 40, "wires": [ [] ] }, { "id": "81a7627c.bac92", "type": "function", "z": "ae90e3e.7d9fba", "name": "get generic_nb_step", "func": "msg.payload = msg.payload.generic_nb_step;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 240, "y": 40, "wires": [ [ "5f4a72d1.9f6adc" ] ] }, { "id": "705dddc5.567bc4", "type": "ui_button", "z": "ae90e3e.7d9fba", "name": "DOWN", "group": "fbd92986.1028c8", "order": 3, "width": 6, "height": 1, "passthru": true, "label": "", "tooltip": "", "color": "", "bgcolor": "", "icon": "arrow_downward", "payload": "DOWN", "payloadType": "str", "topic": "actuator/focus", "x": 520, "y": 120, "wires": [ [ "4f74f017.00a58" ] ] }, { "id": "b0aacff7.56651", "type": "ui_button", "z": "ae90e3e.7d9fba", "name": "UP", "group": "fbd92986.1028c8", "order": 1, "width": 6, "height": 1, "passthru": false, "label": "", "tooltip": "", "color": "", "bgcolor": "", "icon": "arrow_upwards", "payload": "UP", "payloadType": "str", "topic": "actuator/focus", "x": 530, "y": 81, "wires": [ [ "4f74f017.00a58" ] ] }, { "id": "3e9c4e74.aee022", "type": "function", "z": "407d8cdb.3cb7cc", "name": "pump.js", "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar manual_volume= global.get(\"manual_volume\");\nvar flowrate= global.get(\"flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to pass\";\n \n}else if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Flowrate\";\n \n}else {\n volume = global.get(\"manual_volume\");\n nb_step=volume*507\n msg.volume = volume;\n flowrate = global.get(\"flowrate\");\n duration=(volume*60)/flowrate\n delay=(duration/nb_step)-0.005\n msg.topic = \"actuator/pump\";\n \n if(msg.payload === \"FORWARD\" & state===\"free\"){\n msg.payload='FORWARD '+delay+' '+nb_step;\n }\n if(msg.payload === \"BACKWARD\" & state===\"free\"){\n msg.payload='BACKWARD '+delay+' '+nb_step;\n }\n}\nreturn msg;", "outputs": 1, "noerr": 0, "x": 620, "y": 140, "wires": [ [ "98e2e9e0.fb7418" ] ], "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" }, { "id": "3f0df968.b0d286", "type": "ui_button", "z": "407d8cdb.3cb7cc", "name": "BACKWARD", "group": "707d9797.c8e798", "order": 2, "width": 6, "height": 1, "passthru": false, "label": "", "tooltip": "", "color": "", "bgcolor": "", "icon": "arrow_back", "payload": "BACKWARD", "payloadType": "str", "topic": "actuator/pump", "x": 470, "y": 120, "wires": [ [ "3e9c4e74.aee022" ] ] }, { "id": "214fb242.9abb6e", "type": "ui_button", "z": "407d8cdb.3cb7cc", "name": "FORWARD", "group": "707d9797.c8e798", "order": 4, "width": 6, "height": 1, "passthru": true, "label": "", "tooltip": "", "color": "", "bgcolor": "", "icon": "arrow_forward", "payload": "FORWARD", "payloadType": "str", "topic": "actuator/pump", "x": 470, "y": 160, "wires": [ [ "3e9c4e74.aee022" ] ] }, { "id": "1d58e86f.a3a9e8", "type": "rpi-gpio out", "z": "259c8713.b50e28", "name": "", "pin": "40", "set": "", "level": "0", "freq": "", "out": "out", "x": 400, "y": 100, "wires": [] }, { "id": "3e58f066.366b5", "type": "ui_template", "z": "259c8713.b50e28", "group": "f5194cae.c84688", "name": "Stream Pi Camera", "order": 1, "width": 24, "height": 11, "format": "
", "storeOutMessages": true, "fwdInMessages": true, "templateScope": "local", "x": 750, "y": 340, "wires": [ [] ] }, { "id": "b7d9455c.026588", "type": "switch", "z": "ae90e3e.7d9fba", "name": "", "property": "topic", "propertyType": "msg", "rules": [ { "t": "eq", "v": "actuator/focus", "vt": "str" }, { "t": "eq", "v": "Missing entry :", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 2, "x": 810, "y": 100, "wires": [ [ "fdb3b132.8b341" ], [ "b9d996d6.37c2f8" ] ] }, { "id": "b9d996d6.37c2f8", "type": "ui_toast", "z": "ae90e3e.7d9fba", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 970, "y": 140, "wires": [ [] ] }, { "id": "ca38a11d.0ee54", "type": "function", "z": "259c8713.b50e28", "name": "init LED", "func": "msg.payload=1;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 260, "y": 100, "wires": [ [ "1d58e86f.a3a9e8" ] ] }, { "id": "98e2e9e0.fb7418", "type": "switch", "z": "407d8cdb.3cb7cc", "name": "", "property": "topic", "propertyType": "msg", "rules": [ { "t": "eq", "v": "actuator/pump", "vt": "str" }, { "t": "eq", "v": "Missing entry :", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 2, "x": 770, "y": 140, "wires": [ [ "61fb057d.3c251c" ], [ "46a536f0.c83138" ] ] }, { "id": "46a536f0.c83138", "type": "ui_toast", "z": "407d8cdb.3cb7cc", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 930, "y": 160, "wires": [ [] ] }, { "id": "24ffcf03.2a51b", "type": "ui_button", "z": "407d8cdb.3cb7cc", "name": "stop pump", "group": "707d9797.c8e798", "order": 5, "width": 4, "height": 1, "passthru": true, "label": "STOP PUMP", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "", "payload": "off", "payloadType": "str", "topic": "actuator/wait", "x": 470, "y": 200, "wires": [ [ "e2a7220a.09d43" ] ] }, { "id": "4f74f017.00a58", "type": "function", "z": "ae90e3e.7d9fba", "name": "focus.js", "func": "state = global.get(\"state\");\n\nif (state == null){state=\"free\"}\n\nvar nb_step= global.get(\"nb_step\");\n\nif (nb_step === undefined || nb_step === \"\" || nb_step === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Number of steps\";\n \n}else {\n nb_step= global.get(\"nb_step\");\n if(msg.payload === \"UP\" & state===\"free\"){\n msg.payload=\"FORWARD \"+nb_step;\n }\n if(msg.payload === \"DOWN\" & state===\"free\"){\n msg.payload=\"BACKWARD \"+nb_step;\n }\n}\nreturn msg;", "outputs": 1, "noerr": 0, "x": 660, "y": 100, "wires": [ [ "b7d9455c.026588" ] ], "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" }, { "id": "52cc1de5.b78e84", "type": "ui_button", "z": "ae90e3e.7d9fba", "name": "stop focus", "group": "fbd92986.1028c8", "order": 4, "width": 4, "height": 1, "passthru": true, "label": "STOP FOCUS", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "", "payload": "off", "payloadType": "str", "topic": "actuator/wait", "x": 510, "y": 160, "wires": [ [ "e46763fe.7fc83" ] ] }, { "id": "39cad6fb.1503ca", "type": "ui_button", "z": "35488f4f.00498", "name": "", "group": "c6a276ac.3eb74", "order": 1, "width": 0, "height": 0, "passthru": false, "label": "Reboot", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "", "payload": "off", "payloadType": "str", "topic": "reboot", "x": 220, "y": 80, "wires": [ [ "95b876d4.07c708" ] ] }, { "id": "1f53f29b.feee4d", "type": "exec", "z": "35488f4f.00498", "command": "sudo", "addpay": true, "append": "", "useSpawn": "false", "timer": "2", "oldrc": false, "name": "cmd", "x": 530, "y": 80, "wires": [ [], [], [] ] }, { "id": "e325458b.95bff8", "type": "ui_button", "z": "35488f4f.00498", "name": "", "group": "c6a276ac.3eb74", "order": 2, "width": 0, "height": 0, "passthru": false, "label": "Shutdown", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "", "payload": "off", "payloadType": "str", "topic": "shutdown", "x": 220, "y": 140, "wires": [ [ "95b876d4.07c708" ] ] }, { "id": "95b876d4.07c708", "type": "python3-function", "z": "35488f4f.00498", "name": "action", "func": "#!/usr/bin/python\nimport smbus\nimport time\nbus = smbus.SMBus(1)\ntime.sleep(1)\n#turn off fan RGB\nbus.write_byte_data(0x0d, 0x07, 0x00)\nbus.write_byte_data(0x0d, 0x07, 0x00)\n\nmsg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg", "outputs": 1, "x": 390, "y": 100, "wires": [ [ "d348474b.d756a8", "1f53f29b.feee4d" ] ] }, { "id": "d348474b.d756a8", "type": "exec", "z": "35488f4f.00498", "command": "i2cdetect -y 1", "addpay": false, "append": "", "useSpawn": "false", "timer": "1", "oldrc": false, "name": "i2c update", "x": 550, "y": 140, "wires": [ [], [], [] ] }, { "id": "cdd1b550.da18e8", "type": "mqtt in", "z": "91e5fd54.56f58", "name": "", "topic": "receiver/#", "qos": "0", "datatype": "auto", "broker": "b77ffa1b.942258", "x": 80, "y": 40, "wires": [ [ "6920281d.dc9b48" ] ] }, { "id": "6920281d.dc9b48", "type": "switch", "z": "91e5fd54.56f58", "name": "", "property": "topic", "propertyType": "msg", "rules": [ { "t": "eq", "v": "receiver/pump", "vt": "str" }, { "t": "eq", "v": "receiver/focus", "vt": "str" }, { "t": "eq", "v": "receiver/image", "vt": "str" }, { "t": "cont", "v": "receiver/segmentation", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 4, "x": 230, "y": 40, "wires": [ [ "2f66e917.fee586" ], [ "363ee47e.ed522c" ], [ "45a52868.fe37c8" ], [ "469cc189.903d" ] ] }, { "id": "2f66e917.fee586", "type": "switch", "z": "91e5fd54.56f58", "name": "", "property": "payload", "propertyType": "msg", "rules": [ { "t": "eq", "v": "Start", "vt": "str" }, { "t": "eq", "v": "Done", "vt": "str" }, { "t": "eq", "v": "Interrompted", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 3, "x": 470, "y": 40, "wires": [ [ "5c0d0c35.3bcf14" ], [ "cd01157d.0892d8" ], [ "68e02bf4.7013e4" ] ] }, { "id": "5c0d0c35.3bcf14", "type": "change", "z": "91e5fd54.56f58", "name": "The pump has started", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The pump has started", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 920, "y": 40, "wires": [ [] ] }, { "id": "cd01157d.0892d8", "type": "change", "z": "91e5fd54.56f58", "name": "The pump has finished.", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The pump has finished.", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 910, "y": 80, "wires": [ [] ] }, { "id": "68e02bf4.7013e4", "type": "change", "z": "91e5fd54.56f58", "name": "The pump has been stopped.", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The pump has been stopped.", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 900, "y": 120, "wires": [ [] ] }, { "id": "363ee47e.ed522c", "type": "switch", "z": "91e5fd54.56f58", "name": "", "property": "payload", "propertyType": "msg", "rules": [ { "t": "eq", "v": "Start", "vt": "str" }, { "t": "eq", "v": "Done", "vt": "str" }, { "t": "eq", "v": "Interrompted", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 3, "x": 470, "y": 200, "wires": [ [ "c088b72f.326d98" ], [ "36934381.14442c" ], [ "89329cfe.c8f4" ] ] }, { "id": "c088b72f.326d98", "type": "change", "z": "91e5fd54.56f58", "name": "The focus has started", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The focus has started", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 920, "y": 200, "wires": [ [] ] }, { "id": "36934381.14442c", "type": "change", "z": "91e5fd54.56f58", "name": "The focus has finished.", "rules": [ { "t": "set", "p": 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"cb2f36fe.1c7038", "x": 910, "y": 120, "wires": [] }, { "id": "e2a7220a.09d43", "type": "mqtt out", "z": "407d8cdb.3cb7cc", "name": "", "topic": "", "qos": "", "retain": "", "broker": "cb2f36fe.1c7038", "x": 610, "y": 200, "wires": [] }, { "id": "45a52868.fe37c8", "type": "switch", "z": "91e5fd54.56f58", "name": "", "property": "payload", "propertyType": "msg", "rules": [ { "t": "eq", "v": "Start", "vt": "str" }, { "t": "eq", "v": "Done", "vt": "str" }, { "t": "eq", "v": "Interrompted", "vt": "str" }, { "t": "cont", "v": "jpg", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 4, "x": 470, "y": 360, "wires": [ [ "113c9b93.455814" ], [ "29a7c6de.6ac2ea" ], [ "f1b07b24.b85718" ], [ "446a811b.25e4b", "a57fea5b.59eb5" ] ] }, { "id": "177a91d4.f1016e", "type": "switch", "z": "91e5fd54.56f58", "name": "", "property": "payload", "propertyType": "msg", "rules": [ { "t": "eq", "v": "Start", "vt": "str" }, { "t": "eq", "v": "Done", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 2, "x": 650, "y": 560, "wires": [ [ "5d717a25.3437e4" ], [ "7d713b16.235164" ] ] }, { "id": "29a7c6de.6ac2ea", "type": "change", "z": "91e5fd54.56f58", "name": "The acquisition has finished.", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The acquisition has finished.", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 900, "y": 400, "wires": [ [ "a57fea5b.59eb5" ] ] }, { "id": "f1b07b24.b85718", "type": "change", "z": "91e5fd54.56f58", "name": "The acquisition has been stopped.", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The acquisition has been stopped.", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 880, "y": 440, "wires": [ [ "a57fea5b.59eb5" ] ] }, { "id": "113c9b93.455814", "type": "change", "z": "91e5fd54.56f58", "name": "The acquisition has started", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The acquisition has started", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 900, "y": 360, "wires": [ [ "a57fea5b.59eb5" ] ] }, { "id": "446a811b.25e4b", "type": "function", "z": "91e5fd54.56f58", "name": "img_counter.js", "func": "img_counter=global.get('img_counter')\nimg_counter=img_counter+1\nglobal.set('img_counter',img_counter)\nmsg.payload = img_counter\nreturn msg;", "outputs": 1, "noerr": 0, "x": 780, "y": 480, "wires": [ [ "57014db.1bbe0b4" ] ] }, { "id": "803b507f.9e38c", "type": "function", "z": "91e5fd54.56f58", "name": "obj_counter.js", "func": "obj_counter=global.get('obj_counter')\nobj_counter=obj_counter+1\nglobal.set('obj_counter',obj_counter)\nmsg.payload = obj_counter\nreturn msg;", "outputs": 1, "noerr": 0, "x": 780, "y": 640, "wires": [ [ "6ad4ae5e.62f4a" ] ] }, { "id": "57014db.1bbe0b4", "type": "ui_chart", "z": "91e5fd54.56f58", "name": "img_counter", "group": "8cfadfab.327d7", "order": 2, "width": 23, "height": 2, "label": "img_counter", "chartType": 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segmentation has finished.", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The segmentation has finished.", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 890, "y": 600, "wires": [ [ "a57fea5b.59eb5" ] ] }, { "id": "5d717a25.3437e4", "type": "change", "z": "91e5fd54.56f58", "name": "The segmentation has started", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "The segmentation has started", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 890, "y": 560, "wires": [ [ "a57fea5b.59eb5" ] ] }, { "id": "6ad4ae5e.62f4a", "type": "ui_chart", "z": "91e5fd54.56f58", "name": "obj_counter", "group": "8cfadfab.327d7", "order": 5, "width": 23, "height": 2, "label": "obj_counter", "chartType": "horizontalBar", "legend": "false", "xformat": "HH:mm:ss", "interpolate": "linear", "nodata": "", "dot": false, "ymin": "", "ymax": "", "removeOlder": 1, "removeOlderPoints": "", "removeOlderUnit": "3600", "cutout": 0, "useOneColor": true, "colors": [ "#1f77b4", "#aec7e8", "#ff7f0e", "#2ca02c", "#98df8a", "#d62728", "#ff9896", "#9467bd", "#c5b0d5" ], "useOldStyle": false, "outputs": 1, "x": 950, "y": 640, "wires": [ [] ] }, { "id": "32b535dc.2d85ea", "type": "function", "z": "91e5fd54.56f58", "name": "", "func": "msg.payload=msg.payload.object_area\nmsg.topic=\"area\"\n\nreturn msg;", "outputs": 1, "noerr": 0, "x": 810, "y": 700, "wires": [ [ "1624f1bf.604bfe" ] ] }, { "id": "73f0f4b.8dd430c", "type": "json", "z": "91e5fd54.56f58", "name": "", "property": "payload", "action": "", "pretty": false, "x": 650, "y": 700, "wires": [ [ "32b535dc.2d85ea" ] ] }, { "id": "6fc7332f.89431c", "type": "exec", "z": "91e5fd54.56f58", "command": "free -m | grep \"Mem\" | awk -F ' ' '{print $3}'", "addpay": false, "append": "", "useSpawn": "", "timer": "", "name": "Get memory used", "x": 750, "y": 780, "wires": [ [ "42781732.a6ab58" ], [], [] ] }, { "id": "7cdef10d.cb2f2", "type": "inject", "z": "91e5fd54.56f58", "name": "", "topic": "", "payload": "", "payloadType": "num", "repeat": "1", "crontab": "", "once": false, "onceDelay": "", "x": 570, "y": 780, "wires": [ [ "6fc7332f.89431c" ] ] }, { "id": "42781732.a6ab58", "type": "ui_chart", "z": "91e5fd54.56f58", "name": "", "group": "8cfadfab.327d7", "order": 1, "width": 0, "height": 0, "label": "Memory load", "chartType": "line", "legend": "false", "xformat": "auto", "interpolate": "linear", "nodata": "", "dot": false, "ymin": "", "ymax": "", "removeOlder": 1, "removeOlderPoints": "", "removeOlderUnit": "3600", "cutout": 0, "useOneColor": false, "colors": [ "#1f77b4", "#aec7e8", "#ff7f0e", "#2ca02c", "#98df8a", "#d62728", "#ff9896", "#9467bd", "#c5b0d5" ], "useOldStyle": false, "outputs": 1, "x": 950, "y": 760, "wires": [ [] ] }, { "id": "1624f1bf.604bfe", "type": "ui_chart", "z": "91e5fd54.56f58", "name": "", "group": "8cfadfab.327d7", "order": 8, "width": 0, "height": 0, "label": "chart", "chartType": "line", "legend": "false", "xformat": "HH:mm:ss", "interpolate": "linear", "nodata": "", "dot": true, "ymin": "", "ymax": "", "removeOlder": 1, "removeOlderPoints": "1000", "removeOlderUnit": "3600", "cutout": 0, "useOneColor": false, "colors": [ "#1f77b4", "#aec7e8", "#ff7f0e", "#2ca02c", "#98df8a", "#d62728", "#ff9896", "#9467bd", "#c5b0d5" ], "useOldStyle": false, "outputs": 1, "x": 970, "y": 700, "wires": [ [] ] }, { "id": "7f101b25.0da4a4", "type": "subflow:173a6e6b.e5ca6a", "z": "259c8713.b50e28", "name": "", "env": [], "x": 750, "y": 60, "wires": [ [ "1a5edafb.a05cf5" ] ] }, { "id": "d8dbecd.f7b3b9", "type": "subflow:ae90e3e.7d9fba", "z": "259c8713.b50e28", "name": "", "env": [], "x": 740, "y": 260, "wires": [ [ "1a5edafb.a05cf5" ] ] }, { "id": "309468bc.ac83f8", "type": "ui_text_input", "z": "407d8cdb.3cb7cc", "name": "manual_volume", "label": "Volume to pass (ml)", "tooltip": "", "group": "707d9797.c8e798", "order": 3, "width": 8, "height": 1, "passthru": true, "mode": "number", "delay": 300, "topic": "manual_volume", "x": 460, "y": 80, "wires": [ [] ] }, { "id": "f859eeef.c59ed", "type": "function", "z": "407d8cdb.3cb7cc", "name": "get generic_manual_volume", "func": "msg.payload = msg.payload.generic_manual_volume;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 220, "y": 80, "wires": [ [ "309468bc.ac83f8" ] ] }, { "id": "59b05f7f.9e83f8", "type": "ui_slider", "z": "407d8cdb.3cb7cc", "name": "flowrate", "label": "Flowrate (ml/min)*", "tooltip": "", "group": "707d9797.c8e798", "order": 1, "width": 0, "height": 0, "passthru": true, "outs": "end", "topic": "flowrate", "min": 0, "max": "20", "step": "0.1", "x": 480, "y": 40, "wires": [ [] ] }, { "id": "d9a85435.ced5e", "type": "function", "z": "407d8cdb.3cb7cc", "name": "get generic.flowrate", "func": "msg.payload = msg.payload.generic_flowrate;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 190, "y": 40, "wires": [ [ "59b05f7f.9e83f8" ] ] }, { "id": "c986ae96.860ec8", "type": "subflow:407d8cdb.3cb7cc", "z": "259c8713.b50e28", "name": "", "env": [], "x": 740, "y": 300, "wires": [ [ "1a5edafb.a05cf5" ] ] }, { "id": "99b5a67.080f258", "type": "subflow:bdd6e33e.5db3b8", "z": "259c8713.b50e28", "name": "", "env": [], "x": 760, "y": 100, "wires": [ [ "1a5edafb.a05cf5" ], [ "e001a28.555566" ] ] }, { "id": "a71ba4a6.c44c4", "type": "subflow:ad5a5663.ce893", "z": "259c8713.b50e28", "name": "", "env": [], "x": 740, "y": 140, "wires": [ [ "1a5edafb.a05cf5" ], [ "e001a28.555566" ] ] }, { "id": "9c301fc6.9a9318", "type": "subflow:35488f4f.00498", "z": "259c8713.b50e28", "name": "System commands", "env": [], "x": 750, "y": 460, "wires": [] }, { "id": "4d5b9f01.270e88", "type": "exec", "z": "344146df.e4d5ba", "command": "vcgencmd measure_temp | tr -d \"temp=\" | tr -d \"'C\" | tr -d \"\\n\"", "addpay": false, "append": "", "useSpawn": "", "timer": "", "name": "RPi Temp.", "x": 350, "y": 80, "wires": [ [ "4f3fb60b.912848" ], [], [] ] }, { "id": "1c4bc7ff.94aa8", "type": "inject", "z": "344146df.e4d5ba", "name": "", "topic": "", "payload": "", "payloadType": "date", "repeat": "10", "crontab": "", "once": false, "onceDelay": "", "x": 190, "y": 80, "wires": [ [ "4d5b9f01.270e88" ] ] }, { "id": "4f3fb60b.912848", "type": "python3-function", "z": "344146df.e4d5ba", "name": "fan.py", "func": "#!/usr/bin/python\nimport smbus\nimport sys\n\ntemp = msg[\"payload\"]\n\ntemp = int(temp.split('.',1)[0])\n\nbus = smbus.SMBus(1)\n\nDEVICE_ADDRESS = 0x0d\n\nif temp < 38:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x00)\nif temp > 42:\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)\n bus.write_byte_data(DEVICE_ADDRESS, 0x08, 0x01)", "outputs": 1, "x": 530, "y": 80, "wires": [ [] ] }, { "id": "ee70d541.87713", "type": "subflow:344146df.e4d5ba", "z": "259c8713.b50e28", "name": "", "env": [], "x": 300, "y": 140, "wires": [] }, { "id": "c14cf94.1413e88", "type": "ui_text_input", "z": "b73d5eb8.60ef3", "name": "duration_flush", "label": "Duration of the flushing (s)", "tooltip": "", "group": "f41d0ecb.8be06", "order": 2, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "duration_flush", "x": 520, "y": 80, "wires": [ [] ] }, { "id": "d7b55d02.e41f1", "type": "ui_text_input", "z": "b73d5eb8.60ef3", "name": "duration_bef_seq", "label": "Duration before sequence (s)", "tooltip": "", "group": "f41d0ecb.8be06", "order": 4, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "duration_bef_seq", "x": 510, "y": 160, "wires": [ [] ] }, { "id": "8729ec5c.cf4ab8", "type": "ui_text_input", "z": "b73d5eb8.60ef3", "name": "nb_img", "label": "Number of images per acquisition", "tooltip": "", "group": "f41d0ecb.8be06", "order": 3, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "nb_img", "x": 540, "y": 120, "wires": [ [] ] }, { "id": "3808d004.94ea28", "type": "function", "z": "b73d5eb8.60ef3", "name": "get duration_flush", "func": "msg.payload = msg.payload.duration_flush;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 210, "y": 80, "wires": [ [ "c14cf94.1413e88" ] ] }, { "id": "f7cc1192.5a51e8", "type": "function", "z": "b73d5eb8.60ef3", "name": "get nb_img", "func": "msg.payload = msg.payload.nb_img;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 190, "y": 120, "wires": [ [ "8729ec5c.cf4ab8" ] ] }, { "id": "10ce45f6.3036ca", "type": "function", "z": "b73d5eb8.60ef3", "name": "get duration_bef_seq", "func": "msg.payload = msg.payload.duration_bef_seq;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 220, "y": 160, "wires": [ [ "d7b55d02.e41f1" ] ] }, { "id": "27bbe0f0.05b2c", "type": "ui_text_input", "z": "b73d5eb8.60ef3", "name": "duration_bef_img", "label": "Duration before image (s)", "tooltip": "", "group": "f41d0ecb.8be06", "order": 5, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "duration_bef_img", "x": 510, "y": 200, "wires": [ [] ] }, { "id": "70dfb6bb.9319", "type": "function", "z": "b73d5eb8.60ef3", "name": "get duration_bef_img", "func": "msg.payload = msg.payload.duration_bef_img;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 220, "y": 200, "wires": [ [ "27bbe0f0.05b2c" ] ] }, { "id": "b31fd152.a5489", "type": "ui_text_input", "z": "b73d5eb8.60ef3", "name": "duration_between", "label": "Duration between acquisition (s)", "tooltip": "", "group": "f41d0ecb.8be06", "order": 6, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "duration_between", "x": 510, "y": 240, "wires": [ [] ] }, { "id": "a0b53585.93216", "type": "function", "z": "b73d5eb8.60ef3", "name": "get duration_between", "func": "msg.payload = msg.payload.duration_between;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 220, "y": 240, "wires": [ [ "b31fd152.a5489" ] ] }, { "id": "fee8c0fa.108778", "type": "subflow:91e5fd54.56f58", "z": "259c8713.b50e28", "name": "", "env": [], "x": 760, "y": 380, "wires": [] }, { "id": "fe5585e.a1ab078", "type": "subflow:4475ba6c.45604c", "z": "259c8713.b50e28", "name": "process metadata", "env": [], "x": 750, "y": 180, "wires": [ [ "1a5edafb.a05cf5" ] ] }, { "id": "da9f1367.3a17a8", "type": "subflow:b73d5eb8.60ef3", "z": "259c8713.b50e28", "d": true, "name": "Valve actuation", "env": [], "x": 740, "y": 220, "wires": [ [ "1a5edafb.a05cf5" ] ], "icon": "node-red-dashboard/ui_switch.png" }, { "id": "69799a39.13803c", "type": "function", "z": "b73d5eb8.60ef3", "name": "get duration_bef_cycle", "func": "msg.payload = msg.payload.duration_bef_cycle;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 220, "y": 40, "wires": [ [ "7a0b6294.e887c4" ] ] }, { "id": "7a0b6294.e887c4", "type": "ui_text_input", "z": "b73d5eb8.60ef3", "name": "duration_bef_cycle", "label": "Duration before the cycles (s)", "tooltip": "", "group": "f41d0ecb.8be06", "order": 1, "width": 0, "height": 0, "passthru": true, "mode": "number", "delay": 300, "topic": "duration_bef_cycle", "x": 510, "y": 40, "wires": [ [] ] }, { "id": "a57fea5b.59eb5", "type": "ui_toast", "z": "91e5fd54.56f58", "position": "top right", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 0, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 1220, "y": 360, "wires": [] }, { "id": "f7d3d0c4.0203", "type": "exec", "z": "1b486ba8.f8c41c", "command": "sudo date -s", "addpay": true, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "", "x": 1010, "y": 240, "wires": [ [], [], [] ] }, { "id": "c5fcaba5.184e88", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = new Date();\n//get weekday\nvar weekday = new Array(7);\nweekday[0] = \"Sun\";\nweekday[1] = \"Mon\";\nweekday[2] = \"Tue\";\nweekday[3] = \"Wed\";\nweekday[4] = \"Thu\";\nweekday[5] = \"Fri\";\nweekday[6] = \"Sat\";\nvar w = weekday[d.getUTCDay()];\n//get Month\nvar month = new Array(12);\nmonth[0] = \"Jan\";\nmonth[1] = \"Feb\";\nmonth[2] = \"Mar\";\nmonth[3] = \"Apr\";\nmonth[4] = \"May\";\nmonth[5] = \"Jun\";\nmonth[6] = \"Jul\";\nmonth[7] = \"Aug\";\nmonth[8] = \"Sep\";\nmonth[9] = \"Oct\";\nmonth[10] = \"Nov\";\nmonth[11] = \"Dec\";\nvar n = month[d.getUTCMonth()];\n \n//get day\nvar day = d.getUTCDay()\n\n//get Hours\nvar Hours = d.getUTCHours();\n//get Minutes\nvar Minutes = d.getUTCMinutes();\n//get Seconds\nvar Seconds = d.getUTCSeconds();\n//get FullYear\nvar FullYear = d.getUTCFullYear();\n\n//Thu Aug 09 2012 23:34:04 GMT+0200 (GMT+02:00)\n\n//Thu Aug 9 21:31:26 UTC 2012\n\n//msg.payload = \"Thu Aug 9 21:31:26 UTC 2012\"\n\nmsg.payload = '\"'+w+\" \"+n+\" \"+day+\" \"+Hours+\":\"+Minutes+\":\"+Seconds+\" UTC \"+FullYear+'\"';\nreturn msg;", "outputs": 1, "noerr": 0, "x": 490, "y": 40, "wires": [ [ "a1c2a5e3.4aea58" ] ] }, { "id": "807d5cce.2bb1e", "type": "subflow:1b486ba8.f8c41c", "z": "259c8713.b50e28", "name": "", "env": [], "x": 280, "y": 180, "wires": [] }, { "id": "a1c2a5e3.4aea58", "type": "ui_template", "z": "1b486ba8.f8c41c", "group": "9214d59d.e7b52", "name": "", "order": 1, "width": 0, "height": 0, "format": "
", "storeOutMessages": true, "fwdInMessages": true, "templateScope": "local", "x": 640, "y": 40, "wires": [ [] ] }, { "id": "9b1b260f.e4b338", "type": "function", "z": "ad5a5663.ce893", "name": "set object_time", "func": "var time = new Date(msg.payload);\n\nvar hour = time.getUTCHours();\nif (hour<10){hour = \"0\"+hour;}\nvar minute = time.getUTCMinutes();\nif (minute<10){minute = \"0\"+minute;}\n\nvar time_UTC = \"\"+hour+minute;\nglobal.set('object_time',time_UTC);\nreturn msg;", "outputs": 1, "noerr": 0, "x": 804, "y": 80, "wires": [ [] ] }, { "id": "86aa9817.45a2e8", "type": "function", "z": "ad5a5663.ce893", "name": "set object_date", "func": "var date = new Date(msg.payload);\n\nvar year = date.getUTCFullYear();\nvar month = date.getUTCMonth()+1;\nif (month<10){month = \"0\"+month;}\nvar day = date.getUTCDate();\nif (day<10){day = \"0\"+day;}\n\nvar date_UTC = \"\"+year+month+day;\nglobal.set('object_date',date_UTC);\n\nreturn msg;", "outputs": 1, "noerr": 0, "x": 804, "y": 40, "wires": [ [] ] }, { "id": "546376f8.9d25d8", "type": "ui_numeric", "z": "1b486ba8.f8c41c", "name": "year", "label": "Year", "tooltip": "", "group": "9214d59d.e7b52", "order": 2, "width": 5, "height": 1, "wrap": false, "passthru": true, "topic": "year", "format": "{{value}}", "min": "2020", "max": "2030", "step": 1, "x": 630, "y": 80, "wires": [ [ "dc685555.af057" ] ] }, { "id": "8a701d46.962ed8", "type": "ui_numeric", "z": "1b486ba8.f8c41c", "name": "month", "label": "Month", "tooltip": "", "group": "9214d59d.e7b52", "order": 3, "width": 3, "height": 1, "wrap": false, "passthru": true, "topic": "month", "format": "{{value}}", "min": "1", "max": "12", "step": 1, "x": 630, "y": 120, "wires": [ [ "dc685555.af057" ] ] }, { "id": "3e39bc34.b3042c", "type": "ui_numeric", "z": "1b486ba8.f8c41c", "name": "day", "label": "Day", "tooltip": "", "group": "9214d59d.e7b52", "order": 4, "width": 3, "height": 1, "wrap": false, "passthru": true, "topic": "day", "format": "{{value}}", "min": "1", "max": "31", "step": 1, "x": 630, "y": 160, "wires": [ [ "dc685555.af057" ] ] }, { "id": "6edc1533.cd3ab4", "type": "ui_numeric", "z": "1b486ba8.f8c41c", "name": "hour", "label": "Hour", "tooltip": "", "group": "9214d59d.e7b52", "order": 5, "width": 3, "height": 1, "wrap": false, "passthru": true, "topic": "hour", "format": "{{value}}", "min": "0", "max": "23", "step": 1, "x": 630, "y": 200, "wires": [ [ "dc685555.af057" ] ] }, { "id": "1ba0f9e6.1be54e", "type": "ui_numeric", "z": "1b486ba8.f8c41c", "name": "minute", "label": "Minute", "tooltip": "", "group": "9214d59d.e7b52", "order": 6, "width": 3, "height": 1, "wrap": false, "passthru": true, "topic": "minute", "format": "{{value}}", "min": "0", "max": "59", "step": 1, "x": 630, "y": 240, "wires": [ [ "dc685555.af057" ] ] }, { "id": "fd050fce.2ffe28", "type": "ui_numeric", "z": "1b486ba8.f8c41c", "name": "second", "label": "Second", "tooltip": "", "group": "9214d59d.e7b52", "order": 7, "width": 3, "height": 1, "wrap": false, "passthru": true, "topic": "second", "format": "{{value}}", "min": "0", "max": "59", "step": 1, "x": 640, "y": 280, "wires": [ [ "dc685555.af057" ] ] }, { "id": "e1cc68bb.7b045", "type": "interval", "z": "1b486ba8.f8c41c", "name": "interval", "interval": "1", "onstart": false, "msg": "ping", "showstatus": true, "unit": "seconds", "statusformat": "YYYY-MM-D HH:mm:ss", "x": 310, "y": 40, "wires": [ [ "c5fcaba5.184e88" ] ] }, { "id": "23f1828c.afae3e", "type": "ui_button", "z": "1b486ba8.f8c41c", "name": "", "group": "9214d59d.e7b52", "order": 8, "width": 4, "height": 1, "passthru": false, "label": "Update", "tooltip": "", "color": "black", "bgcolor": "white", "icon": "", "payload": "", "payloadType": "str", "topic": "", "x": 640, "y": 320, "wires": [ [ "cb4c9210.01c958" ] ] }, { "id": "cb4c9210.01c958", "type": "function", "z": "1b486ba8.f8c41c", "name": "update datetime", "func": "var FullYear= global.get(\"year\");\nvar Month= global.get(\"month\");\nvar day= global.get(\"day\");\nvar Hours= global.get(\"hour\");\nvar Minutes= global.get(\"minute\");\nvar Seconds= global.get(\"second\");\n\nmsg.payload = new Date();\n//get Month\nvar month = new Array(12);\nmonth[1] = \"Jan\";\nmonth[2] = \"Feb\";\nmonth[3] = \"Mar\";\nmonth[4] = \"Apr\";\nmonth[5] = \"May\";\nmonth[6] = \"Jun\";\nmonth[7] = \"Jul\";\nmonth[8] = \"Aug\";\nmonth[9] = \"Sep\";\nmonth[10] = \"Oct\";\nmonth[11] = \"Nov\";\nmonth[12] = \"Dec\";\nvar n = month[Month];\n \nmsg.payload = '\"'+day+\" \"+n+\" \"+FullYear+\" \"+Hours+\":\"+Minutes+\":\"+Seconds+'\"';\n\n\nreturn msg;", "outputs": 1, "noerr": 0, "x": 800, "y": 320, "wires": [ [ "7c1c8abf.4b984c", "f7d3d0c4.0203" ] ] }, { "id": "dc685555.af057", "type": "function", "z": "1b486ba8.f8c41c", "name": "set global", "func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);\nreturn msg;", "outputs": 1, "noerr": 0, "x": 840, "y": 60, "wires": [ [] ] }, { "id": "7c1c8abf.4b984c", "type": "debug", "z": "1b486ba8.f8c41c", "name": "", "active": true, "tosidebar": true, "console": false, "tostatus": false, "complete": "false", "x": 1010, "y": 300, "wires": [] }, { "id": "92842b63.e0d7b8", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = msg.payload;\n\nvar val = d.getUTCFullYear();\n\nmsg.payload = val;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 490, "y": 80, "wires": [ [ "546376f8.9d25d8" ] ] }, { "id": "48033b32.2bca94", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = new Date();\nmsg.payload = d\nreturn msg;", "outputs": 1, "noerr": 0, "x": 310, "y": 80, "wires": [ [ "92842b63.e0d7b8", "94057891.b1a658", "aab6990b.1cf718", "42b00a98.b36bb4", "e2370ad.c8e7ff8", "9c43dfe1.eb6178" ] ] }, { "id": "94057891.b1a658", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = msg.payload;\n\nvar val = d.getUTCMonth();\n\nmsg.payload = val+1;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 490, "y": 120, "wires": [ [ "8a701d46.962ed8" ] ] }, { "id": "aab6990b.1cf718", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = msg.payload;\n\nvar val = d.getUTCDay();\n\nmsg.payload = val;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 490, "y": 160, "wires": [ [ "3e39bc34.b3042c" ] ] }, { "id": "42b00a98.b36bb4", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = msg.payload;\n\nvar val = d.getUTCHours();\n\nmsg.payload = val;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 490, "y": 200, "wires": [ [ "6edc1533.cd3ab4" ] ] }, { "id": "e2370ad.c8e7ff8", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = msg.payload;\n\nvar val = d.getUTCMinutes();\n\nmsg.payload = val;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 490, "y": 240, "wires": [ [ "1ba0f9e6.1be54e" ] ] }, { "id": "9c43dfe1.eb6178", "type": "function", "z": "1b486ba8.f8c41c", "name": "", "func": "d = msg.payload;\n\nvar val = d.getUTCSeconds();\n\nmsg.payload = val;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 490, "y": 280, "wires": [ [ "fd050fce.2ffe28" ] ] }, { "id": "ca843dd8.d1c62", "type": "exec", "z": "66c23d37.f72cdc", "command": "python3.7 /home/pi/PlanktonScope/script/mqtt_pump_focus_image_segment_strem.py", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "", "x": 520, "y": 100, "wires": [ [], [ "a49ed5a6.5b73b8" ], [] ] }, { "id": "1af32c3e.856864", "type": "exec", "z": "66c23d37.f72cdc", "command": "ps -ax | grep \"python3.7 /home/pi/PlanktonScope/script/mqtt_pump_focus_image_segment_strem.py\"| head -1 | awk -F \" \" '{print$1}' ", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "", "x": 660, "y": 160, "wires": [ [ "ddabe48c.369c68" ], [], [] ] }, { "id": "ddabe48c.369c68", "type": "exec", "z": "66c23d37.f72cdc", "command": "kill", "addpay": true, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "", "x": 1210, "y": 120, "wires": [ [ "6382060e.460ab8" ], [ "6382060e.460ab8" ], [ "6382060e.460ab8" ] ] }, { "id": "fcaca139.5ed04", "type": "ui_button", "z": "66c23d37.f72cdc", "name": "", "group": "9214d59d.e7b52", "order": 9, "width": 12, "height": 1, "passthru": false, "label": "Kill MQTT", "tooltip": "", "color": "", "bgcolor": "", "icon": "", "payload": "", "payloadType": "str", "topic": "", "x": 80, "y": 160, "wires": [ [ "1af32c3e.856864" ] ] }, { "id": "9d663990.fd2908", "type": "ui_button", "z": "66c23d37.f72cdc", "name": "", "group": "9214d59d.e7b52", "order": 10, "width": 12, "height": 1, "passthru": false, "label": "Restart MQTT", "tooltip": "", "color": "", "bgcolor": "", "icon": "", "payload": "", "payloadType": "str", "topic": "", "x": 100, "y": 100, "wires": [ [ "ca843dd8.d1c62" ] ] }, { "id": "a49ed5a6.5b73b8", "type": "ui_toast", "z": "66c23d37.f72cdc", "position": "top right", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 0, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 920, "y": 100, "wires": [] }, { "id": "fda01242.9576a8", "type": "subflow:66c23d37.f72cdc", "z": "259c8713.b50e28", "name": "", "env": [], "x": 270, "y": 220, "wires": [] }, { "id": "bbb7cb31.15121", "type": "debug", "z": "ad5a5663.ce893", "name": "", "active": true, "tosidebar": true, "console": false, "tostatus": false, "complete": "true", "targetType": "full", "x": 280, "y": 360, "wires": [] }, { "id": "6382060e.460ab8", "type": "debug", "z": "66c23d37.f72cdc", "name": "", "active": true, "tosidebar": true, "console": false, "tostatus": false, "complete": "false", "x": 1380, "y": 120, "wires": [] }, { "id": "b23ae409.085ad8", "type": "ui_button", "z": "8d959937.18735", "name": "", "group": "d170ac9c.3b4828", "order": 1, "width": 0, "height": 0, "passthru": false, "label": "Start Acquisition", "tooltip": "", "color": "", "bgcolor": "", "icon": "", "payload": "", "payloadType": "str", "topic": "actuator/image", "x": 200, "y": 100, "wires": [ [ "715c6be9.55822c" ] ] }, { "id": "715c6be9.55822c", "type": "function", "z": "8d959937.18735", "name": "image.js", "func": "state = global.get(\"state\");\nglobal.set('img_counter',0)\nglobal.set('obj_counter',0)\nif (state == null){state=\"free\"}\n\nvar duration_bef_cycle= global.get(\"duration_bef_cycle\");\nvar duration_flush= global.get(\"duration_flush\");\nvar nb_img= global.get(\"nb_img\");\nvar duration_bef_seq= global.get(\"duration_bef_seq\");\nvar duration_bef_img= global.get(\"duration_bef_img\");\nvar duration_between= global.get(\"duration_between\");\n\nif (duration_bef_cycle === undefined || duration_bef_cycle === \"\" || duration_bef_cycle === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration before the cycles\";\n \n}else if (duration_flush === undefined || duration_flush === \"\" || duration_flush === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration of the flushing\";\n \n}else if (nb_img === undefined || nb_img === \"\" || nb_img === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Directory to store the images\";\n \n}else if (duration_bef_seq === undefined || duration_bef_seq === \"\" || duration_bef_seq === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration before the sequence\";\n \n}else if (duration_bef_img === undefined || duration_bef_img === \"\" || duration_bef_img === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration before an image\";\n \n}else if (duration_between === undefined || duration_between === \"\" || duration_between === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Duration between sequence\";\n \n}else {\n nb_img=nb_img-1\n msg.payload=duration_bef_cycle+' '+duration_flush+' '+nb_img+' '+duration_bef_seq+' '+duration_bef_img+' '+duration_between;\n}\nreturn msg;", "outputs": 1, "noerr": 0, "x": 360, "y": 100, "wires": [ [ "bda62ebe.dd2e4" ] ], "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" }, { "id": "bda62ebe.dd2e4", "type": "switch", "z": "8d959937.18735", "name": "", "property": "topic", "propertyType": "msg", "rules": [ { "t": "eq", "v": "actuator/image", "vt": "str" }, { "t": "eq", "v": "Missing entry :", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 2, "x": 510, "y": 100, "wires": [ [ "366697a.e8f6068" ], [ "e2049db5.46682" ] ] }, { "id": "e2049db5.46682", "type": "ui_toast", "z": "8d959937.18735", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 690, "y": 120, "wires": [ [] ] }, { "id": "366697a.e8f6068", "type": "mqtt out", "z": "8d959937.18735", "name": "", "topic": "", "qos": "", "retain": "", "broker": "cb2f36fe.1c7038", "x": 670, "y": 80, "wires": [] }, { "id": "3a85a060.ad2aa", "type": "ui_button", "z": "8d959937.18735", "name": "Stop Acquisition", "group": "d170ac9c.3b4828", "order": 2, "width": 0, "height": 0, "passthru": true, "label": "STOP ACQUISITION", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "", "payload": "off", "payloadType": "str", "topic": "actuator/wait", "x": 200, "y": 140, "wires": [ [ "f59d51da.c3b078" ] ] }, { "id": "f59d51da.c3b078", "type": "mqtt out", "z": "8d959937.18735", "name": "", "topic": "", "qos": "", "retain": "", "broker": "cb2f36fe.1c7038", "x": 350, "y": 140, "wires": [] }, { "id": "8ade1ac1.5c3408", "type": "ui_switch", "z": "8d959937.18735", "name": "Segmentation", "label": "Segmentation", "tooltip": "", "group": "d170ac9c.3b4828", "order": 3, "width": 0, "height": 0, "passthru": false, "decouple": "false", "topic": "actuator/segmentation_state", "style": "", "onvalue": "true", "onvalueType": "str", "onicon": "", "oncolor": "", "offvalue": "false", "offvalueType": "str", "officon": "", "offcolor": "", "x": 200, "y": 180, "wires": [ [ "7751b219.9a3e1c" ] ] }, { "id": "7751b219.9a3e1c", "type": "mqtt out", "z": "8d959937.18735", "name": "", "topic": "", "qos": "", "retain": "", "broker": "cb2f36fe.1c7038", "x": 350, "y": 180, "wires": [] }, { "id": "2a677ff0.62e0f", "type": "subflow:8d959937.18735", "z": "259c8713.b50e28", "name": "", "env": [], "x": 750, "y": 420, "wires": [] } ]