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\n In doubt? Start Here!\n
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sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var 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msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 410, "y": 640, "wires": [ [ "726a7822.cd6298", "e2b277c1.07283", "9a18a4b4.178448" ], [ "52f6b103.1efb6" ] ], "outputLabels": [ "message", "error" ] }, { "id": "18f44504.cac66b", "type": "gpsd", "z": "b771c342.49603", "name": "", "hostname": "localhost", "port": "2947", "tpv": true, "sky": false, "info": false, "device": false, "gst": false, "att": false, "x": 250, "y": 940, "wires": [ [ "258b4562.9f778a", "54e37580.fdc31c", "cc21ca16.b92928", "4a4de52c.cf2884", "35ad311f.344c76" ] ] }, { "id": "726a7822.cd6298", "type": "ui_ui_control", "z": "b771c342.49603", "name": "", "events": "change", "x": 700, "y": 620, "wires": [ [] ] }, { "id": "6c792043.b6ff9", "type": "ui_ui_control", "z": "bccd1f23.87219", "name": "", "events": "change", "x": 560, "y": 1040, "wires": [ [] ] }, { "id": "902429eb.ceacb8", "type": "ui_toast", "z": "bccd1f23.87219", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 570, "y": 1120, "wires": [ [] ] }, { "id": "fe840e05.b46f3", "type": "function", "z": "bccd1f23.87219", "name": "Check form", "func": "var acq_fnumber_objective= global.get(\"acq_fnumber_objective\");\n\nif (acq_fnumber_objective === undefined || acq_fnumber_objective === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Focal Length of the objective\";\n return [null, msg];\n}\n\nmsg.topic = \"Change Tab\";\nmsg.payload={\"tab\":\"Fluidic Acquisition\"};\nreturn [msg, null];", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 330, "y": 1080, "wires": [ [ "6c792043.b6ff9", "326a1d95.ca21aa" ], [ "902429eb.ceacb8" ] ], "outputLabels": [ "message", "error" ] }, { "id": "5846b1d4.7971b", "type": "ui_button", "z": "bccd1f23.87219", "name": "Backward", "group": "707d9797.c8e798", "order": 2, "width": 2, "height": 1, "passthru": false, "label": "", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-rotate-left fa-2x", "payload": "BACKWARD", "payloadType": "str", "topic": "actuator/pump", "x": 160, "y": 260, "wires": [ [ "3cb96380.e575ec" ] ] }, { "id": "2cab680b.baf888", "type": "ui_button", "z": "bccd1f23.87219", "name": "Forward", "group": "707d9797.c8e798", "order": 4, "width": 2, "height": 1, "passthru": true, "label": "", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-rotate-right fa-2x", "payload": "FORWARD", "payloadType": "str", "topic": "actuator/pump", "x": 160, "y": 300, "wires": [ [ "3cb96380.e575ec" ] ] }, { "id": "cc966678.da8d08", "type": "ui_dropdown", "z": "bccd1f23.87219", "name": "acq_fnumber_objective", "label": "M12 Lens*", "tooltip": "", "place": "Select option", "group": "4248342d.e55fac", "order": 3, "width": 0, "height": 0, "passthru": true, "multiple": false, "options": [ { "label": "f 25mm 1/2\" 5MP IR", "value": 25, "type": "num" }, { "label": "f 16mm 1/2.5\" 5MP IR", "value": 16, "type": "num" }, { "label": "f 12mm 1/2.5\" 5MP IR", "value": 12, "type": "num" }, { "label": "f 8mm 1/2.5\" 5MP IR", "value": 8, "type": "num" }, { "label": "f 6mm 1/2.5\" 5MP IR", "value": 6, "type": "num" } ], "payload": "", "topic": "acq_fnumber_objective", "x": 1190, "y": 80, "wires": [ [ "328cec46.09e40c" ] ] }, { "id": "9b515beb.4aea48", "type": "ui_template", "z": "bccd1f23.87219", "group": "4248342d.e55fac", "name": "Magnification", "order": 4, "width": 0, "height": 0, "format": "
\n Magnification : X\n \n \n
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": false, "templateScope": "local", "x": 1460, "y": 140, "wires": [ [] ] }, { "id": "8038414a.34461", "type": "function", "z": "bccd1f23.87219", "name": "Calculate optics", "func": "var acq_fnumber_objective = String(global.get(\"acq_fnumber_objective\"));\nvar acq_camera = global.get(\"acq_camera\")\n\n// Those values needs to be recalculated, they are not good!\nif (acq_camera == \"HQ Camera\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.56;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 1;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.79;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.53;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.41;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}\nelse if (acq_camera == \"Camera v2.1\"){\n switch(acq_fnumber_objective) {\n case \"25\":\n acq_magnification= 0.6;\n process_pixel= 1.86;\n sug_min= 60;\n sug_max= 670;\n sug_flowrate= 3;\n break;\n case \"16\":\n acq_magnification= 1.6;\n process_pixel= 0.7;\n sug_min= 40;\n sug_max= 430;\n sug_flowrate= 2.4;\n break;\n case \"12\":\n acq_magnification= 1.20;\n process_pixel= 0.94;\n sug_min= 30;\n sug_max= 340;\n sug_flowrate= 1.25;\n break;\n case \"8\":\n acq_magnification= 1.78;\n process_pixel= 0.63;\n sug_min= 20;\n sug_max= 230;\n sug_flowrate= 0.42;\n break;\n case \"6\":\n acq_magnification= 2.36;\n process_pixel= 0.48;\n sug_min= 15;\n sug_max= 170;\n sug_flowrate= 0.32;\n break;\n }\n}else {\n acq_magnification= \"ERROR\";\n process_pixel= \"ERROR\";\n sug_min= \"ERROR\";\n sug_max= \"ERROR\";\n sug_flowrate= \"ERROR\";\n}\n\nglobal.set(\"acq_magnification\",acq_magnification);\nglobal.set(\"process_pixel\",process_pixel);\n\nreturn [{payload: acq_magnification}, {payload: process_pixel}, {payload: sug_min}, {payload: sug_max}, {payload: sug_flowrate}];", "outputs": 5, "noerr": 0, "initialize": "", "finalize": "", "x": 1200, "y": 180, "wires": [ [ "9b515beb.4aea48" ], [ "3d2360ad.e41e7" ], [ "8e66977b.9166a8" ], [ "26b32f2c.c64fc" ], [] ], "inputLabels": [ "acq_fnumber_objective" ], "outputLabels": [ "acq_magnification", "process_pixel", "sug_min", "sug_max", "sug_flowrate" ] }, { "id": "3d2360ad.e41e7", "type": "ui_template", "z": "bccd1f23.87219", "group": "4248342d.e55fac", "name": "process_pixel", "order": 5, "width": 0, "height": 0, "format": "
\n Pixel resolution :\n \n μm\n
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": false, "templateScope": "local", "x": 1460, "y": 180, "wires": [ [] ] }, { "id": "8e66977b.9166a8", "type": "ui_template", "z": "bccd1f23.87219", "group": "4248342d.e55fac", "name": "min_size", "order": 6, "width": 0, "height": 0, "format": "
\n Smallest cells to explore :\n \n μm\n
", "storeOutMessages": true, "fwdInMessages": true, "templateScope": "local", "x": 1440, "y": 220, "wires": [ [] ] }, { "id": "26b32f2c.c64fc", "type": "ui_template", "z": "bccd1f23.87219", "group": "4248342d.e55fac", "name": "max_size", "order": 7, "width": 0, "height": 0, "format": "
\n Biggest cells to explore :\n \n μm\n
", "storeOutMessages": true, "fwdInMessages": true, "templateScope": "local", "x": 1440, "y": 260, "wires": [ [] ] }, { "id": "bb2bb7ce.1d1458", "type": "ui_template", "z": "baa1e3d9.cb29d", "group": "858a0e3c.987fe", "name": "Stream Pi Camera", "order": 1, "width": 10, "height": 8, "format": "
\n \n
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": false, "templateScope": "local", "x": 910, "y": 40, "wires": [ [] ] }, { "id": "d0c5b57d.590818", "type": "ui_ui_control", "z": "baa1e3d9.cb29d", "name": "", "events": "change", "x": 1280, "y": 700, "wires": [ [] ] }, { "id": "16de754c.cc969b", "type": "ui_button", "z": "b771c342.49603", "name": "", "group": "5517c651.b2f668", "order": 1, "width": 5, "height": 1, "passthru": false, "label": "Previous", "tooltip": "", "color": "#097479", "bgcolor": "white", "icon": "keyboard_return", "payload": "{\"tab\":\"Home\"}", "payloadType": "json", "topic": "", "x": 240, "y": 580, "wires": [ [ "222c851d.5d0a3a" ] ] }, { "id": "84f3d040.5f7ea", "type": "ui_button", "z": "b771c342.49603", "name": "", "group": "5517c651.b2f668", "order": 2, "width": 5, "height": 1, "passthru": false, "label": "Continue", "tooltip": "", "color": "#097479", "bgcolor": "white", "icon": "keyboard_tab", "payload": "{\"tab\":\"Home\"}", "payloadType": "json", "topic": "", "x": 240, "y": 640, "wires": [ [ "986d960a.c75908" ] ] }, { "id": "f61aaed5.1e64", "type": "ui_button", "z": "bccd1f23.87219", "name": "", "group": "7a0b4877.a5d268", "order": 1, "width": 5, "height": 1, "passthru": false, "label": "Previous", "tooltip": "", "color": "#097479", "bgcolor": "white", "icon": "keyboard_return", "payload": "{\"tab\":\"Sample\"}", "payloadType": "json", "topic": "", "x": 140, "y": 1040, "wires": [ [ "6c792043.b6ff9" ] ] }, { "id": "9ba6ec0a.22c96", "type": "ui_button", "z": "bccd1f23.87219", "name": "", "group": "7a0b4877.a5d268", "order": 2, "width": 5, "height": 1, "passthru": false, "label": "Continue", "tooltip": "", "color": "#097479", "bgcolor": "white", "icon": "keyboard_tab", "payload": "{\"tab\":\"Home\"}", "payloadType": "json", "topic": "", "x": 140, "y": 1080, "wires": [ [ "fe840e05.b46f3" ] ] }, { "id": "c72f8fae.23bd4", "type": "ui_button", "z": "baa1e3d9.cb29d", "name": "", "group": "b7919ae2.c01788", "order": 1, "width": 5, "height": 1, "passthru": false, "label": "Previous", "tooltip": "", "color": "#097479", "bgcolor": "white", "icon": "keyboard_return", "payload": "{\"tab\":\"Optic Configuration\"}", "payloadType": "json", "topic": "", "x": 1140, "y": 700, "wires": [ [ "d0c5b57d.590818" ] ] }, { "id": "29be525e.0c87fe", "type": "ui_template", "z": "baa1e3d9.cb29d", "group": "b5d61bc7.54fe48", "name": "Show Metadata", "order": 9, "width": 0, "height": 0, "format": "
\n \n \n \n \n \n \n \n \n \n
\n

Sample

\n

id:

\n

project:

\n

ship:

\n

operator:

\n

sampling gear:

\n

concentrated volume:

\n

gear net opening:

\n

total volume filtered:

\n
\n

Acquisition

\n

id:

\n

instrument:

\n

instrument id:

\n

camera:

\n

celltype:

\n

minimum mesh:

\n

maximum mesh:

\n

min esd:

\n

max esd:

\n

volume:

\n

magnification:

\n

fnumber objective:

\n

software:

\n
\n

Object

\n

latitude:

\n

longitude:

\n

latitude end:

\n

longitude end:

\n

date:

\n

time:

\n

date end:

\n

time end:

\n

depth min:

\n

depth max:

\n
\n

Process

\n

pixel:

\n

id:

\n
\n
", "storeOutMessages": false, "fwdInMessages": false, "resendOnRefresh": false, "templateScope": "local", "x": 1160, "y": 420, "wires": [ [] ] }, { "id": "cbb8afed.0a026", "type": "rpi-gpio out", "z": "bccd1f23.87219", "name": "LED Output", "pin": "40", "set": true, "level": "0", "freq": "", "out": "out", "x": 450, "y": 40, "wires": [] }, { "id": "3cb96380.e575ec", "type": "function", "z": "bccd1f23.87219", "name": "pump", "func": "var manual_volume= global.get(\"pump_manual_volume\");\nvar flowrate= global.get(\"pump_flowrate\");\n\nif (manual_volume === undefined || manual_volume === \"\" || manual_volume === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Volume to pass\";\n return [null, msg];\n}\nelse if (flowrate === undefined || flowrate === \"\" || flowrate === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Flowrate\";\n return [null, msg];\n}\nelse {\n msg.topic = \"actuator/pump\";\n // msg.payload is FORWARD or BACKWARD here\n msg.payload={\"action\":\"move\", \n \"direction\":msg.payload,\n \"volume\":manual_volume,\n \"flowrate\":flowrate};\n}\nreturn [msg, null];", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 350, "y": 280, "wires": [ [ "bdc8ce57.de1f08" ], [ "8bcce348.efc1a" ] ], "inputLabels": [ "direction" ], "outputLabels": [ "message", "error" ] }, { "id": "8bcce348.efc1a", "type": "ui_toast", "z": "bccd1f23.87219", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 550, "y": 280, "wires": [ [] ] }, { "id": "bdc8ce57.de1f08", "type": "mqtt out", "z": "bccd1f23.87219", "name": "", "topic": "", "qos": "", "retain": "", "broker": "8dc3722c.06efa8", "x": 530, "y": 220, "wires": [] }, { "id": "d71d224f.0585d8", "type": "ui_toast", "z": "bccd1f23.87219", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 670, "y": 660, "wires": [ [] ] }, { "id": "65ad39d.b6d4d48", "type": "function", "z": "bccd1f23.87219", "name": "focus", "func": "var distance = global.get(\"focus_distance\");\n\nif (distance === undefined || distance === \"\" || distance === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Distance\";\n return [null, msg]\n}else {\n distance = global.get(\"focus_distance\");\n // msg.payload is UP or DOWN here\n msg.payload={\"action\":\"move\", \n \"direction\":msg.payload,\n \"distance\":(distance/1000)};\n}\nreturn [msg, null];", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 370, "y": 640, "wires": [ [ "62030521.88317c" ], [ "d71d224f.0585d8" ] ], "inputLabels": [ "direction" ], "outputLabels": [ "message", "error" ] }, { "id": "1962d999.4a97e6", "type": "ui_button", "z": "bccd1f23.87219", "name": "stop focus", "group": "fbd92986.1028c8", "order": 6, "width": 0, "height": 0, "passthru": true, "label": " STOP FOCUS", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "fa-pause fa-2x", "payload": "{\"action\":\"stop\"}", "payloadType": "json", "topic": "actuator/focus", "x": 170, "y": 500, "wires": [ [ "62030521.88317c" ] ] }, { "id": "62030521.88317c", "type": "mqtt out", "z": "bccd1f23.87219", "name": "", "topic": "", "qos": "", "retain": "", "broker": "8dc3722c.06efa8", "x": 650, "y": 580, "wires": [] }, { "id": "3bd43039.bc5fb8", "type": "ui_button", "z": "bccd1f23.87219", "name": "", "group": "fbd92986.1028c8", "order": 1, "width": 5, "height": 1, "passthru": false, "label": "UP 1mm", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-angle-up fa-3x", "payload": "{\"action\":\"move\",\"direction\":\"UP\",\"distance\":1}", "payloadType": "json", "topic": "actuator/focus", "x": 180, "y": 540, "wires": [ [ "62030521.88317c" ] ] }, { "id": "c0663029.2d03b", "type": "ui_button", "z": "bccd1f23.87219", "name": "", "group": "fbd92986.1028c8", "order": 4, "width": 5, "height": 1, "passthru": false, "label": "DOWN 1mm", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-angle-down fa-3x", "payload": "{\"action\":\"move\",\"direction\":\"DOWN\",\"distance\":1}", "payloadType": "json", "topic": "actuator/focus", "x": 170, "y": 580, "wires": [ [ "62030521.88317c" ] ] }, { "id": "69d4ea6c.4c1e2c", "type": "ui_slider", "z": "bccd1f23.87219", "name": "focus_distance", "label": "Focus Distance", "tooltip": "in µm", "group": "fbd92986.1028c8", "order": 3, "width": 0, "height": 0, "passthru": true, "outs": "end", "topic": "focus_distance", "min": "25", "max": "2000", "step": "25", "x": 540, "y": 420, "wires": [ [ "dc48dc42.98d18" ] ] }, { "id": "71f55a58.d7eaf4", "type": "inject", "z": "bccd1f23.87219", "name": "Default: 500µm", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "0.5", "topic": "", "payload": "500", "payloadType": "num", "x": 120, "y": 420, "wires": [ [ "69d4ea6c.4c1e2c" ] ] }, { "id": "9a1d0e7c.2d5a1", "type": "inject", "z": "bccd1f23.87219", "name": "Default: OFF", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "payload": "{\"action\":\"off\"}", "payloadType": "str", "x": 150, "y": 160, "wires": [ [ "f0775525.cf806" ] ] }, { "id": "8ea9dc9a.c7d87", "type": "function", "z": "bccd1f23.87219", "name": "Encapsulate settings", "func": "msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"iso\":msg.payload}\n}\nmsg.topic = \"imager/image\"\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 740, "y": 720, "wires": [ [ "845e06e1.0d812" ] ] }, { "id": "5765a825.a595c8", "type": "ui_slider", "z": "bccd1f23.87219", "name": "Shutter speed slider", "label": "Shutter Speed", "tooltip": "In microseconds, up to 1000µs, 125µs by default", "group": "8c38a81e.9897a8", "order": 5, "width": 0, "height": 0, "passthru": true, "outs": "end", "topic": "imager/image", "min": "125", "max": "1000", "step": "1", "x": 400, "y": 800, "wires": [ [ "c38509b.fb08af8" ] ] }, { "id": "c38509b.fb08af8", "type": "function", "z": "bccd1f23.87219", "name": "Encapsulate settings", "func": "msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"shutter_speed\":msg.payload}\n}\nmsg.topic = \"imager/image\"\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 740, "y": 800, "wires": [ [ "845e06e1.0d812" ] ] }, { "id": "845e06e1.0d812", "type": "mqtt out", "z": "bccd1f23.87219", "name": "", "topic": "", "qos": "", "retain": "", "broker": "8dc3722c.06efa8", "x": 1010, "y": 840, "wires": [] }, { "id": "2350e507.d4e302", "type": "inject", "z": "bccd1f23.87219", "name": "Default: 125µs", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "1", "topic": "", "payload": "125", "payloadType": "num", "x": 120, "y": 800, "wires": [ [ "5765a825.a595c8" ] ] }, { "id": "2edd922b.a471a6", "type": "inject", "z": "bccd1f23.87219", "name": "Default: ISO 100", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "1", "topic": "", "payload": "100", "payloadType": "num", "x": 130, "y": 720, "wires": [ [ "87f8732c.caf648" ] ] }, { "id": "f782a471.447748", "type": "inject", "z": "bccd1f23.87219", "name": "Default: 2mL/min", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "0.5", "topic": "", "payload": "2", "payloadType": "num", "x": 130, "y": 340, "wires": [ [ "34c81624.df1cea" ] ] }, { "id": "73b8252a.5ca754", "type": "inject", "z": "bccd1f23.87219", "name": "Default: 2mL", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "0.5", "topic": "", "payload": "2", "payloadType": "num", "x": 110, "y": 380, "wires": [ [ "68962547.34a67c" ] ] }, { "id": "8ec68b82.17e3d8", "type": "ui_button", "z": "cb95299c.2817c8", "name": "Start segmentation", "group": "abeb6dad.635a2", "order": 10, "width": 5, "height": 1, "passthru": false, "label": "Start segmentation", "tooltip": "", "color": "", "bgcolor": "", "icon": "", "payload": "{\"action\":\"segment\"}", "payloadType": "json", "topic": "segmenter/segment", "x": 370, "y": 460, "wires": [ [ "33c28dc1.238002", "c72a1064.1ec388" ] ] }, { "id": "27be7971.b3fbce", "type": "ui_button", "z": "cb95299c.2817c8", "d": true, "name": "Stop segmentation", "group": "abeb6dad.635a2", "order": 8, "width": 4, "height": 1, "passthru": true, "label": "Stop segmentation", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "", "payload": "{\"action\":\"stop\"}", "payloadType": "json", "topic": "segmenter/segment", "x": 370, "y": 520, "wires": [ [ "16f3cef4.0acac9" ] ] }, { "id": "16f3cef4.0acac9", "type": "mqtt out", "z": "cb95299c.2817c8", "name": "", "topic": "", "qos": "", "retain": "", "broker": "8dc3722c.06efa8", "x": 850, "y": 520, "wires": [] }, { "id": "569154a.b53182c", "type": "inject", "z": "1371dec5.76e671", "name": "once", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "", "topic": "", "payload": "start", "payloadType": "str", "x": 130, "y": 620, "wires": [ [ "452af41c.43940c" ] ] }, { "id": "4b489713.ccde5", "type": "ui_button", "z": "baa1e3d9.cb29d", "name": "", "group": "4322c187.e73e5", "order": 12, "width": 5, "height": 1, "passthru": false, "label": "Start Acquisition", "tooltip": "", "color": "", "bgcolor": "", "icon": "camera", "payload": "", "payloadType": "str", "topic": "imager/image", "x": 420, "y": 500, "wires": [ [ "c9f510c0.7d1328" ] ] }, { "id": "c9f510c0.7d1328", "type": "function", "z": "baa1e3d9.cb29d", "name": "Image control", "func": "// Reset the number of images taken\nglobal.set('img_counter', 0);\n\nvar acq_celltype = global.get(\"acq_celltype\");\nvar acq_minimum_mesh = global.get(\"acq_minimum_mesh\");\nvar acq_maximum_mesh = global.get(\"acq_maximum_mesh\");\nvar imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar acq_id = global.get(\"acq_id\");\nvar nb_frame = global.get(\"nb_frame\");\nvar pump_direction = global.get(\"pump_direction\");\nvar sleep_before = global.get(\"sleep_before\");\nvar object_date = global.get(\"object_date\");\n\nif (acq_celltype === undefined || acq_celltype === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Type of the flowcell\";\n return [null, msg];\n} else if (acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Lower fraction size\";\n return [null, msg];\n} else if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Upper fraction size\";\n return [null, msg];\n} else if (imaging_pump_volume === undefined || imaging_pump_volume === \"\" || imaging_pump_volume === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Volume inbetween images\";\n return [null, msg];\n} else if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Acquisition ID\";\n return [null, msg];\n} else if (nb_frame === undefined || nb_frame === \"\" || nb_frame === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Number of image to save\";\n return [null, msg];\n} else if (pump_direction === undefined || pump_direction === \"\" || pump_direction === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Pump direction\";\n return [null, msg];\n} else if (sleep_before === undefined || sleep_before === \"\" || sleep_before === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Delay before image\";\n return [null, msg];\n}else if (object_date === undefined || object_date === \"\" || object_date === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Object date\";\n return [null, msg];\n}\n\nmsg.payload = {\n \"action\": \"image\",\n \"sleep\": sleep_before,\n \"pump_direction\": pump_direction,\n \"volume\": imaging_pump_volume,\n \"nb_frame\": nb_frame,\n}\n\nreturn [msg, null];", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 640, "y": 500, "wires": [ [ "52ea7d01.711034", "40c12463.a1f84c", "a4abb1ae.2ae418" ], [ "20e0a8c8.edbeb" ] ] }, { "id": "20e0a8c8.edbeb", "type": "ui_toast", "z": "baa1e3d9.cb29d", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 890, "y": 580, "wires": [ [] ] }, { "id": "c3e50240.82aa58", "type": "mqtt out", "z": "baa1e3d9.cb29d", "name": "", "topic": "", "qos": "", "retain": "", "broker": "8dc3722c.06efa8", "x": 1130, "y": 460, "wires": [] }, { "id": "3a4450b1.4459a8", "type": "ui_button", "z": "baa1e3d9.cb29d", "name": "Stop Acquisition", "group": "4322c187.e73e5", "order": 11, "width": 5, "height": 1, "passthru": true, "label": "STOP ACQUISITION", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "cancel", "payload": "{\"action\":\"stop\"}", "payloadType": "json", "topic": "imager/image", "x": 420, "y": 540, "wires": [ [ "d74210ef.edc15" ] ] }, { "id": "d74210ef.edc15", "type": "mqtt out", "z": "baa1e3d9.cb29d", "name": "", "topic": "", "qos": "", "retain": "", "broker": "8dc3722c.06efa8", "x": 610, "y": 540, "wires": [] }, { "id": "bb62da8a.ebc328", "type": "ui_switch", "z": "baa1e3d9.cb29d", "name": "Pump direction", "label": "Pump direction", "tooltip": "BACKWARD / FORWARD", "group": "4322c187.e73e5", "order": 9, "width": 5, "height": 1, "passthru": true, "decouple": "false", "topic": "pump_direction", "style": "", "onvalue": "FORWARD", "onvalueType": "str", "onicon": "", "oncolor": "", "offvalue": "BACKWARD", "offvalueType": "str", "officon": "", "offcolor": "", "x": 420, "y": 580, "wires": [ [ "6b2239f3.41fa3" ] ] }, { "id": "52ea7d01.711034", "type": "function", "z": "baa1e3d9.cb29d", "name": "Encapsulate config", "func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Pumped volume, in mL\",\n\t\t \"acq_imaged_volume\": \"Total imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_id\": global.get(\"process_id\"),\n\t\t\"process_source\": \"https://www.github.com/PlanktonPlanet/PlanktonScope\",\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n\tmsg.payload.config[\"sample_total_volume\"] = global.get(\"sample_total_volume\")\n}\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 870, "y": 460, "wires": [ [ "c3e50240.82aa58", "29be525e.0c87fe" ] ] }, { "id": "40c12463.a1f84c", "type": "delay", "z": "baa1e3d9.cb29d", "name": "", "pauseType": "delay", "timeout": "1", "timeoutUnits": "seconds", "rate": "1", "nbRateUnits": "1", "rateUnits": "second", "randomFirst": "1", "randomLast": "5", "randomUnits": "seconds", "drop": false, "x": 900, "y": 500, "wires": [ [ "c3e50240.82aa58" ] ] }, { "id": "4d1b02cb.83b51c", "type": "ui_button", "z": "baa1e3d9.cb29d", "name": "", "group": "4322c187.e73e5", "order": 10, "width": 5, "height": 1, "passthru": false, "label": "Update config", "tooltip": "", "color": "", "bgcolor": "", "icon": "save", "payload": "", "payloadType": "str", "topic": "imager/image", "x": 420, "y": 460, "wires": [ [ "52ea7d01.711034" ] ] }, { "id": "452af41c.43940c", "type": "python3-function", "z": "1371dec5.76e671", "name": "Get MachineName", "func": "import sys\nsys.path.append('/home/pi/PlanktonScope/scripts')\nimport planktoscope.uuidName\n\nmsg['payload'] = planktoscope.uuidName.machineName(machine=planktoscope.uuidName.getSerial())\nmsg['topic'] = \"acq_instrument_id\";\nreturn msg", "outputs": 1, "x": 350, "y": 620, "wires": [ [ "4828d2f4.7c712c", "a400a97e.e333a8" ] ] }, { "id": "4828d2f4.7c712c", "type": "function", "z": "1371dec5.76e671", "name": "set global", "func": "global.set(msg.topic,msg.payload);\n", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 580, "y": 640, "wires": [ [] ] }, { "id": "d027a6bf.7049e8", "type": "function", "z": "b771c342.49603", "name": "get sample_projet", "func": "msg.payload = msg.payload.sample_project;\nglobal.set(\"sample_projet\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 310, "y": 40, "wires": [ [ "9c882b37.fde668" ] ] }, { "id": "5a811caf.0f3144", "type": "function", "z": "b771c342.49603", "name": "get sample_ship", "func": "msg.payload = msg.payload.sample_ship;\nglobal.set(\"sample_ship\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 310, "y": 80, "wires": [ [ "4557d689.a4fa88" ] ] }, { "id": "45911c98.2bd83c", "type": "function", "z": "b771c342.49603", "name": "get sample_id", "func": "msg.payload = msg.payload.sample_id;\nglobal.set(\"sample_id\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 300, "y": 120, "wires": [ [ "94eb4221.9b92c" ] ] }, { "id": "1e09a4ab.72996b", "type": "function", "z": "b771c342.49603", "name": "get sample_operator", "func": "msg.payload = msg.payload.sample_operator;\nglobal.set(\"sample_operator\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 320, "y": 160, "wires": [ [ "82c5fc77.59c97" ] ] }, { "id": "a3272681.f271c8", "type": "function", "z": "b771c342.49603", "name": "get sample_sampling_gear", "func": "if (msg.payload.sample_sampling_gear === null){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nglobal.set(\"sample_sampling_gear\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 340, "y": 200, "wires": [ [ "fcfc31ae.af3af", "46eb1bf8.3dc5f4" ] ] }, { "id": "6465bdd5.15eb8c", "type": "file in", "z": "1c24ad9c.bebec2", "name": "", "filename": "/home/pi/PlanktonScope/config.json", "format": "utf8", "chunk": false, "sendError": false, "encoding": "none", "x": 470, "y": 60, "wires": [ [ "15ceb135.6628bf" ] ], "info": "# PlanktonScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" }, { "id": "15ceb135.6628bf", "type": "json", "z": "1c24ad9c.bebec2", "name": "config.json", "property": "payload", "action": "", "pretty": false, "x": 730, "y": 60, "wires": [ [ "ad541674.4791c8" ] ] }, { "id": "7205d267.36adcc", "type": "file", "z": "1c24ad9c.bebec2", "name": "", "filename": "/home/pi/PlanktonScope/config.json", "appendNewline": true, "createDir": true, "overwriteFile": "true", "encoding": "none", "x": 990, "y": 160, "wires": [ [] ] }, { "id": "2e6ddf51.c0dba", "type": "json", "z": "1c24ad9c.bebec2", "name": "config.json", "property": "payload", "action": "str", "pretty": true, "x": 730, "y": 160, "wires": [ [ "7205d267.36adcc" ] ] }, { "id": "ad541674.4791c8", "type": "function", "z": "1c24ad9c.bebec2", "name": "Global Set", "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 910, "y": 60, "wires": [ [] ] }, { "id": "3e9a33c.141384c", "type": "inject", "z": "1c24ad9c.bebec2", "name": "Load config", "props": [ { "p": "topic", "vt": "str" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "x": 210, "y": 60, "wires": [ [ "6465bdd5.15eb8c" ] ] }, { "id": "e2f39a35.f57298", "type": "subflow:1c24ad9c.bebec2", "z": "1371dec5.76e671", "name": "", "env": [], "x": 570, "y": 560, "wires": [ [ "bdc6718a.dd5d48" ] ] }, { "id": "a6907a38.f6611", "type": "subflow:1c24ad9c.bebec2", "z": "b771c342.49603", "name": "", "env": [], "x": 70, "y": 120, "wires": [ [ "d027a6bf.7049e8", "5a811caf.0f3144", "45911c98.2bd83c", "1e09a4ab.72996b", "296c73f.78ff10c", "8dff1648.82e42", "9f04c5ec.75f3d8", "f408a273.4fb538" ] ] }, { "id": "e2b277c1.07283", "type": "subflow:1c24ad9c.bebec2", "z": "b771c342.49603", "name": "", "env": [], "x": 690, "y": 660, "wires": [ [] ] }, { "id": "68fa1227.dbdd5c", "type": "function", "z": "bccd1f23.87219", "name": "get acq_fnumber_objective", "func": "msg.payload = msg.payload.acq_fnumber_objective;\n\nglobal.set(\"acq_fnumber_objective\",msg.payload);\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 920, "y": 80, "wires": [ [ "cc966678.da8d08", "328cec46.09e40c" ] ] }, { "id": "1c45ea1c.80234e", "type": "subflow:1c24ad9c.bebec2", "z": "bccd1f23.87219", "name": "", "x": 710, "y": 80, "wires": [ [ "68fa1227.dbdd5c" ] ] }, { "id": "5921d0d0.a3d568", "type": "subflow:1c24ad9c.bebec2", "z": "baa1e3d9.cb29d", "name": "", "env": [], "x": 90, "y": 180, "wires": [ [ "f3658d30.b8448", "d3ca8847.4d1ae", "5e3dec55.881074", "de2c90cf.b73b08" ] ] }, { "id": "f3658d30.b8448", "type": "function", "z": "baa1e3d9.cb29d", "name": "get acq_id", "func": "msg.payload = msg.payload.acq_id;\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 310, "y": 240, "wires": [ [ "6b34c456.83178c" ] ] }, { "id": "de2c90cf.b73b08", "type": "function", "z": "baa1e3d9.cb29d", "name": "get acq_celltype", "func": "msg.payload = msg.payload.acq_celltype;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 320, "y": 200, "wires": [ [ "cc0ca68b.4263a8" ] ] }, { "id": "5e3dec55.881074", "type": "function", "z": "baa1e3d9.cb29d", "name": "get acq_minimum_mesh", "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 350, "y": 120, "wires": [ [ "f59a2f0d.5e9af" ] ] }, { "id": "d3ca8847.4d1ae", "type": "function", "z": "baa1e3d9.cb29d", "name": "get acq_maximum_mesh", "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 350, "y": 160, "wires": [ [ "6008a8bb.259f08" ] ] }, { "id": "bdc6718a.dd5d48", "type": "ui_text", "z": "1371dec5.76e671", "group": "ce9e278.781eed8", "order": 2, "width": 0, "height": 0, "name": "", "label": "Instrument Type", "format": "{{msg.payload.acq_instrument}}", "layout": "row-spread", "x": 840, "y": 560, "wires": [] }, { "id": "a400a97e.e333a8", "type": "ui_text", "z": "1371dec5.76e671", "group": "ce9e278.781eed8", "order": 1, "width": 0, "height": 0, "name": "", "label": "Instrument Name", "format": "{{msg.payload}}", "layout": "row-spread", "x": 610, "y": 600, "wires": [] }, { "id": "f783aefd.c3bfd8", "type": "ui_text", "z": "1371dec5.76e671", "group": "ce9e278.781eed8", "order": 4, "width": 0, "height": 0, "name": "", "label": "Camera Name", "format": "{{msg.payload}}", "layout": "row-spread", "x": 1020, "y": 620, "wires": [] }, { "id": "7116e906.9f50f", "type": "ui_text", "z": "b771c342.49603", "group": "fc5e4e6f.5b1c8", "order": 1, "width": 10, "height": 1, "name": "GPS Status Display", "label": "GPS Status:", "format": "{{msg.payload}}", "layout": "row-center", "x": 730, "y": 840, "wires": [] }, { "id": "48879182.6fd718", "type": "inject", "z": "baa1e3d9.cb29d", "name": "Default: 100", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "0.2", "topic": "", "payload": "100", "payloadType": "num", "x": 310, "y": 280, "wires": [ [ "51b4d0df.d70a88" ] ] }, { "id": "6451f991.aaac1", "type": "ui_button", "z": "bccd1f23.87219", "name": "stop pump", "group": "707d9797.c8e798", "order": 5, "width": 3, "height": 1, "passthru": true, "label": " STOP PUMP", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "fa-pause fa-2x", "payload": "{\"action\":\"stop\"}", "payloadType": "json", "topic": "actuator/pump", "x": 150, "y": 220, "wires": [ [ "bdc8ce57.de1f08" ] ] }, { "id": "b402f719.55bc98", "type": "inject", "z": "baa1e3d9.cb29d", "name": "Default: FORWARD", "props": [ { "p": "payload" }, { "p": "topic", "vt": "str" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "pump_direction", "payload": "FORWARD", "payloadType": "str", "x": 180, "y": 580, "wires": [ [ "bb62da8a.ebc328" ] ] }, { "id": "6b2239f3.41fa3", "type": "function", "z": "baa1e3d9.cb29d", "name": "set global", "func": "global.set(msg.topic, msg.payload);", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 620, "y": 580, "wires": [ [] ] }, { "id": "51b4d0df.d70a88", "type": "ui_text_input", "z": "baa1e3d9.cb29d", "name": "nb_frame", "label": "Number of images to acquire", "tooltip": "", "group": "4322c187.e73e5", "order": 2, "width": 5, "height": 1, "passthru": true, "mode": "number", "delay": 300, "topic": "nb_frame", "x": 640, "y": 280, "wires": [ [ "fb887036.12429", "67091ac0.8f9f6c", "99b11fe4.2795d" ] ] }, { "id": "9c7f7fc9.c8d3a", "type": "ui_text_input", "z": "b771c342.49603", "name": "object_depth_max", "label": "Max sampling depth (m)", "tooltip": "in m", "group": "3e1ba03d.f01d8", "order": 9, "width": 5, "height": 1, "passthru": true, "mode": "number", "delay": "0", "topic": "object_depth_max", "x": 650, "y": 240, "wires": [ [ "9f501f49.45645" ] ] }, { "id": "317eeeb7.8d3042", "type": "ui_text_input", "z": "b771c342.49603", "name": "object_depth_min", "label": "Min sampling depth (m)", "tooltip": "in m", "group": "3e1ba03d.f01d8", "order": 8, "width": 5, "height": 1, "passthru": true, "mode": "number", "delay": "0", "topic": "object_depth_min", "x": 650, "y": 280, "wires": [ [ "9f501f49.45645" ] ] }, { "id": "999065ca.27edb8", "type": "switch", "z": "baa1e3d9.cb29d", "name": "topic filter", "property": "topic", "propertyType": "msg", "rules": [ { "t": "eq", "v": "status/pump", "vt": "str" }, { "t": "eq", "v": "status/focus", "vt": "str" }, { "t": "eq", "v": "status/imager", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 3, "x": 320, "y": 840, "wires": [ [ "a46a1e7f.88a92", "6742014e.1bb238" ], [ "c516d9ea.f7f6e", "6742014e.1bb238" ], [ "307c851e.fb0f7a", "2b9d6988.d84836" ] ] }, { "id": "2b009bd7.c07004", "type": "ui_text", "z": "baa1e3d9.cb29d", "group": "70de8209.68416c", "order": 3, "width": 10, "height": 2, "name": "imager", "label": "Imager status:", "format": "{{msg.payload.status}}", "layout": "col-center", "x": 770, "y": 780, "wires": [] }, { "id": "c516d9ea.f7f6e", "type": "ui_text", "z": "baa1e3d9.cb29d", "group": "70de8209.68416c", "order": 1, "width": 5, "height": 1, "name": "focus", "label": "Focus status:", "format": "{{msg.payload.status}}", "layout": "col-center", "x": 770, "y": 740, "wires": [] }, { "id": "a46a1e7f.88a92", "type": "ui_text", "z": "baa1e3d9.cb29d", "group": "70de8209.68416c", "order": 2, "width": 5, "height": 1, "name": "pump", "label": "Pump status:", "format": "{{msg.payload.status}}", "layout": "col-center", "x": 770, "y": 700, "wires": [] }, { "id": "bb628f8d.98f108", "type": "link in", "z": "baa1e3d9.cb29d", "name": "Status for fluidic module", "links": [ "58f2e0f.4e8b12" ], "x": 175, "y": 840, "wires": [ [ "999065ca.27edb8" ] ] }, { "id": "1fdf77b5.24e4e", "type": "mqtt in", "z": "9a22e67a.378818", "name": "", "topic": "status/#", "qos": "0", "datatype": "json", "broker": "8dc3722c.06efa8", "x": 290, "y": 340, "wires": [ [ "fa73983d.318188" ] ] }, { "id": "4a1e9e3e.27506", "type": "switch", "z": "9a22e67a.378818", "name": "Filter segmenter out", "property": "topic", "propertyType": "msg", "rules": [ { "t": "else" }, { "t": "cont", "v": "status/segmenter", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 2, "x": 620, "y": 340, "wires": [ [ "58f2e0f.4e8b12" ], [ "dcf5bd45.16a8d" ] ] }, { "id": "fa73983d.318188", "type": "json", "z": "9a22e67a.378818", "name": "", "property": "payload", "action": "obj", "pretty": true, "x": 430, "y": 340, "wires": [ [ "4a1e9e3e.27506" ] ] }, { "id": "58f2e0f.4e8b12", "type": "link out", "z": "9a22e67a.378818", "name": "Fluidic module status", "links": [ "bb628f8d.98f108" ], "x": 795, "y": 320, "wires": [] }, { "id": "307c851e.fb0f7a", "type": "switch", "z": "baa1e3d9.cb29d", "name": "Imaging state", "property": "payload", "propertyType": "msg", "rules": [ { "t": "jsonata_exp", "v": "$contains(msg.payload.status, \"jpg\")\t", "vt": "jsonata" }, { "t": "else" } ], "checkall": "false", "repair": false, "outputs": 2, "x": 550, "y": 940, "wires": [ [ "db8e3dde.44efb8" ], [ "6742014e.1bb238" ] ] }, { "id": "db8e3dde.44efb8", "type": "function", "z": "baa1e3d9.cb29d", "name": "img_counter.js", "func": "img_counter=global.get('img_counter')\nimg_counter=img_counter+1\nglobal.set('img_counter',img_counter)\nmsg.payload = img_counter\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 800, "y": 980, "wires": [ [ "39812a27.6cb10e" ] ] }, { "id": "59164d65.e7993c", "type": "ui_toast", "z": "baa1e3d9.cb29d", "position": "top right", "displayTime": "5", "highlight": "", "sendall": true, "outputs": 0, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 1260, "y": 880, "wires": [] }, { "id": "8c7348aa.1962e8", "type": "template", "z": "baa1e3d9.cb29d", "name": "Create sentence", "field": "payload", "fieldType": "msg", "format": "handlebars", "syntax": "mustache", "template": "The {{topic}} is {{payload.status}}", "output": "str", "x": 1060, "y": 880, "wires": [ [ "59164d65.e7993c" ] ] }, { "id": "6742014e.1bb238", "type": "change", "z": "baa1e3d9.cb29d", "name": "Remove high-level topic", "rules": [ { "t": "change", "p": "topic", "pt": "msg", "from": "status/", "fromt": "str", "to": "", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 830, "y": 880, "wires": [ [ "8c7348aa.1962e8" ] ] }, { "id": "1a2e721a.f5e876", "type": "ui_gauge", "z": "baa1e3d9.cb29d", "name": "progress donut", "group": "b5d61bc7.54fe48", "order": 3, "width": 6, "height": 3, "gtype": "donut", "title": "", "label": "%", "format": "{{value}}", "min": 0, "max": "100", "colors": [ "#ffa83f", "#e6ff02", "#00dfe9" ], "seg1": "50", "seg2": "75", "x": 1260, "y": 980, "wires": [] }, { "id": "39812a27.6cb10e", "type": "function", "z": "baa1e3d9.cb29d", "name": "percent image", "func": "msg.payload = (100 * msg.payload/global.get('nb_frame')).toFixed(2)\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 1040, "y": 980, "wires": [ [ "1a2e721a.f5e876" ] ] }, { "id": "8f3788f6.ddcf98", "type": "function", "z": "cb95299c.2817c8", "name": "obj_counter", "func": "obj_counter = flow.get('obj_counter')\nobj_counter = obj_counter + 1\nflow.set('obj_counter', obj_counter)\nmsg.payload = obj_counter\nmsg.topic = \"object count\"\nreturn msg", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 810, "y": 800, "wires": [ [ "fa3b7929.ac7da8", "9d53dbe2.dbffe8" ] ] }, { "id": "aa38dbbc.cf0a9", "type": "switch", "z": "cb95299c.2817c8", "name": "Segmenter", "property": "topic", "propertyType": "msg", "rules": [ { "t": "eq", "v": "status/segmenter", "vt": "str" }, { "t": "eq", "v": "status/segmenter/name", "vt": "str" }, { "t": "eq", "v": "status/segmenter/object_id", "vt": "str" }, { "t": "eq", "v": "status/segmenter/metric", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 4, "x": 490, "y": 740, "wires": [ [ "b9a23b91.93638", "6919465f.332e5" ], [ "49af3d24.1799e4" ], [ "8f3788f6.ddcf98" ], [ "50ce901f.b5034" ] ] }, { "id": "9d53dbe2.dbffe8", "type": "ui_chart", "z": "cb95299c.2817c8", "name": "counter graph", "group": "46be9c86.dea684", "order": 7, "width": 10, "height": 2, "label": "", "chartType": "horizontalBar", "legend": "false", "xformat": "HH:mm:ss", "interpolate": "linear", "nodata": "Objects count will be shown here once the segmentation is started", "dot": false, "ymin": "", "ymax": "", "removeOlder": 1, "removeOlderPoints": "", "removeOlderUnit": "3600", "cutout": 0, "useOneColor": true, "useUTC": false, "colors": [ "#1f77b4", "#aec7e8", "#ff7f0e", "#2ca02c", "#98df8a", "#d62728", "#ff9896", "#9467bd", "#c5b0d5" ], "outputs": 1, "x": 1340, "y": 840, "wires": [ [] ] }, { "id": "50ce901f.b5034", "type": "function", "z": "cb95299c.2817c8", "name": "ex : area", "func": "// Payload looks like this:\n// {'name': '01_13_28_232066_0',\n// 'metadata': {\n// 'label': 0, 'width': 29, 'height': 80, ....\n\nmsg.payload=msg.payload.metadata.area_exc\nmsg.topic=\"area\"\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 800, "y": 920, "wires": [ [ "458cd82e.03d258" ] ] }, { "id": "a4f0f0d1.3aca88", "type": "ui_toast", "z": "cb95299c.2817c8", "position": "top right", "displayTime": "5", "highlight": "", "sendall": true, "outputs": 0, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 1340, "y": 680, "wires": [] }, { "id": "458cd82e.03d258", "type": "ui_chart", "z": "cb95299c.2817c8", "name": "Area chart", "group": "46be9c86.dea684", "order": 9, "width": 10, "height": 6, "label": "", "chartType": "line", "legend": "false", "xformat": "HH:mm:ss", "interpolate": "linear", "nodata": "Objects area will be shown here once the segmentation is started", "dot": true, "ymin": "", "ymax": "", "removeOlder": 1, "removeOlderPoints": "1000", "removeOlderUnit": "3600", "cutout": 0, "useOneColor": false, "useUTC": true, "colors": [ "#1f77b4", "#aec7e8", "#ff7f0e", "#2ca02c", "#98df8a", "#d62728", "#ff9896", "#9467bd", "#c5b0d5" ], "outputs": 1, "x": 1330, "y": 920, "wires": [ [] ] }, { "id": "49af3d24.1799e4", "type": "debug", "z": "cb95299c.2817c8", "name": "segmentation name", "active": true, "tosidebar": true, "console": false, "tostatus": false, "complete": "true", "targetType": "full", "statusVal": "", "statusType": "auto", "x": 830, "y": 760, "wires": [] }, { "id": "7088a5be.0c79a4", "type": "template", "z": "cb95299c.2817c8", "name": "Create sentence", "field": "payload", "fieldType": "msg", "format": "handlebars", "syntax": "mustache", "template": "The {{topic}} is {{payload.status}}", "output": "str", "x": 1100, "y": 680, "wires": [ [ "a4f0f0d1.3aca88" ] ] }, { "id": "b9a23b91.93638", "type": "change", "z": "cb95299c.2817c8", "name": "Remove high-level topic", "rules": [ { "t": "change", "p": "topic", "pt": "msg", "from": "status/", "fromt": "str", "to": "", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 850, "y": 680, "wires": [ [ "7088a5be.0c79a4" ] ] }, { "id": "6919465f.332e5", "type": "ui_text", "z": "cb95299c.2817c8", "group": "46be9c86.dea684", "order": 1, "width": 10, "height": 1, "name": "segmenter", "label": "Segmenter status:", "format": "{{msg.payload.status}}", "layout": "row-spread", "x": 810, "y": 720, "wires": [] }, { "id": "fa3b7929.ac7da8", "type": "ui_text", "z": "cb95299c.2817c8", "group": "46be9c86.dea684", "order": 5, "width": 4, "height": 1, "name": "counter", "label": "", "format": "{{msg.payload}}", "layout": "col-center", "x": 1320, "y": 800, "wires": [] }, { "id": "640ece83.88cab", "type": "inject", "z": "cb95299c.2817c8", "name": "Init graphs", "props": [ { "p": "payload" }, { "p": "topic", "vt": "str" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "object count", "payload": "0", "payloadType": "num", "x": 810, "y": 880, "wires": [ [ "ac439738.28bc18", "4f3f7c4a.cb21c4" ] ] }, { "id": "25867454.a8e334", "type": "link in", "z": "cb95299c.2817c8", "name": "Segmenter module status", "links": [ "dcf5bd45.16a8d" ], "x": 295, "y": 740, "wires": [ [ "aa38dbbc.cf0a9" ] ] }, { "id": "dcf5bd45.16a8d", "type": "link out", "z": "9a22e67a.378818", "name": "Segmenter module status", "links": [ "25867454.a8e334" ], "x": 795, "y": 360, "wires": [] }, { "id": "52af9ac0.60eb24", "type": "link out", "z": "b771c342.49603", "name": "Sample Operator", "links": [ "c1d4934c.9bb628", "35eb925e.5f8016" ], "x": 815, "y": 160, "wires": [] }, { "id": "9bd72495.a8a098", "type": "ui_text", "z": "baa1e3d9.cb29d", "group": "4322c187.e73e5", "order": 5, "width": 5, "height": 1, "name": "Total imaged volume", "label": "Total imaged volume", "format": "{{msg.payload}}", "layout": "col-center", "x": 1180, "y": 240, "wires": [] }, { "id": "99b11fe4.2795d", "type": "function", "z": "baa1e3d9.cb29d", "name": "imaged volume calc", "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (4.15*3.14*cell/1000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (2.31*1.74*cell/1000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 940, "y": 240, "wires": [ [ "9bd72495.a8a098" ] ], "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" }, { "id": "8e16aa2f.e40398", "type": "ui_text", "z": "baa1e3d9.cb29d", "group": "4322c187.e73e5", "order": 7, "width": 5, "height": 1, "name": "Total pumped volume", "label": "Total pumped volume", "format": "{{msg.payload}} mL", "layout": "col-center", "x": 1180, "y": 300, "wires": [] }, { "id": "67091ac0.8f9f6c", "type": "function", "z": "baa1e3d9.cb29d", "name": "acq_volume calc", "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 930, "y": 300, "wires": [ [ "8e16aa2f.e40398" ] ], "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n" }, { "id": "43737d43.eb0e9c", "type": "ui_slider", "z": "bccd1f23.87219", "name": "WB Red slider", "label": "WB: Red", "tooltip": "from 1.0 to 8.0", "group": "8c38a81e.9897a8", "order": 3, "width": 8, "height": 1, "passthru": true, "outs": "end", "topic": "wb_red_gain", "min": "1.0", "max": "8.0", "step": "0.01", "x": 500, "y": 880, "wires": [ [ "5e147425.7666ec", "56835fa1.2fe538" ] ] }, { "id": "5e147425.7666ec", "type": "function", "z": "bccd1f23.87219", "name": "Encapsulate settings", "func": "if (msg.topic == \"wb_red_gain\"){\n msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"white_balance_gain\":{\n \"red\":Math.round(msg.payload*100)\n }\n }\n }\n}\nif (msg.topic == \"wb_blue_gain\"){\n msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"white_balance_gain\":{\n \"blue\":Math.round(msg.payload*100)\n }\n }\n }\n}\nmsg.topic = \"imager/image\"\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 740, "y": 880, "wires": [ [ "845e06e1.0d812" ] ] }, { "id": "7b699798.3d568", "type": "ui_slider", "z": "bccd1f23.87219", "name": "WB Blue slider", "label": "WB: Blue", "tooltip": "from 1.0 to 8.0", "group": "8c38a81e.9897a8", "order": 4, "width": 8, "height": 1, "passthru": true, "outs": "end", "topic": "wb_blue_gain", "min": "1.0", "max": "8.0", "step": "0.01", "x": 500, "y": 920, "wires": [ [ "5e147425.7666ec", "56835fa1.2fe538" ] ] }, { "id": "daedda1b.9805b8", "type": "function", "z": "bccd1f23.87219", "name": "Encapsulate settings", "func": "msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"white_balance\":msg.payload}\n}\nmsg.topic = \"imager/image\"\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 740, "y": 960, "wires": [ [ "845e06e1.0d812" ] ] }, { "id": "82722a3c.846b3", "type": "inject", "z": "bccd1f23.87219", "name": "Default: OFF", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "1", "topic": "", "payload": "false", "payloadType": "bool", "x": 110, "y": 960, "wires": [ [ "60e44330.50bdec" ] ] }, { "id": "60e44330.50bdec", "type": "ui_switch", "z": "bccd1f23.87219", "name": "AWB", "label": "Auto White Balance", "tooltip": "", "group": "8c38a81e.9897a8", "order": 2, "width": 2, "height": 2, "passthru": true, "decouple": "false", "topic": "imager/image", "style": "", "onvalue": "auto", "onvalueType": "str", "onicon": "", "oncolor": "", "offvalue": "off", "offvalueType": "str", "officon": "", "offcolor": "", "x": 510, "y": 960, "wires": [ [ "daedda1b.9805b8" ] ] }, { "id": "2b9d6988.d84836", "type": "switch", "z": "baa1e3d9.cb29d", "name": "", "property": "payload", "propertyType": "msg", "rules": [ { "t": "hask", "v": "status", "vt": "str" }, { "t": "hask", "v": "camera_name", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 2, "x": 650, "y": 800, "wires": [ [ "2b009bd7.c07004" ], [ "3bbb756a.84190a" ] ] }, { "id": "3bbb756a.84190a", "type": "function", "z": "baa1e3d9.cb29d", "name": "set camera name", "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 810, "y": 820, "wires": [ [ "559a8085.1d6b9" ] ] }, { "id": "559a8085.1d6b9", "type": "link out", "z": "baa1e3d9.cb29d", "name": "Camera Name", "links": [ "30067f35.532f2", "572a6daa.6004c4", "cfc783d7.d6ceb" ], "x": 965, "y": 820, "wires": [] }, { "id": "30067f35.532f2", "type": "link in", "z": "1371dec5.76e671", "name": "Camera Name", "links": [ "559a8085.1d6b9" ], "x": 875, "y": 620, "wires": [ [ "f783aefd.c3bfd8" ] ] }, { "id": "11b51f8f.acd308", "type": "python3-function", "z": "1371dec5.76e671", "d": true, "name": "fan temperature", "func": "import smbus\nbus = smbus.SMBus(1)\n\naddr = 0x0d\nfan_reg = 0x08\n\ntemp = float( msg[\"payload\"])\n\n# 0x01 full speed, 0x02: 20% speed, ..., 0x09: 90% speed\n\nif temp < 38:\n bus.write_byte_data(addr, fan_reg, 0x00)\nelif temp < 43:\n bus.write_byte_data(addr, fan_reg, 0x02)\nelif temp < 46:\n bus.write_byte_data(addr, fan_reg, 0x04)\nelif temp < 48:\n bus.write_byte_data(addr, fan_reg, 0x06)\nelif temp < 52:\n bus.write_byte_data(addr, fan_reg, 0x08)\nelse:\n bus.write_byte_data(addr, fan_reg, 0x01)\n\nreturn msg", "outputs": 1, "x": 1520, "y": 40, "wires": [ [] ] }, { "id": "cbb123ab.fd3428", "type": "ui_ui_control", "z": "b771c342.49603", "name": "show/hide net groups", "events": "change", "x": 1320, "y": 260, "wires": [ [] ] }, { "id": "c8749cbb.55254", "type": "function", "z": "cb95299c.2817c8", "name": "set global", "func": "global.set(msg.topic, msg.payload);", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 780, "y": 380, "wires": [ [] ] }, { "id": "d43c3ed9.e6cb1", "type": "ui_template", "z": "cb95299c.2817c8", "group": "46be9c86.dea684", "name": "Object counts", "order": 3, "width": 0, "height": 0, "format": "

Object counts

", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, "templateScope": "local", "x": 1340, "y": 760, "wires": [ [] ] }, { "id": "857e90c1.cd25b", "type": "ui_template", "z": "cb95299c.2817c8", "group": "46be9c86.dea684", "name": "Area chart", "order": 8, "width": 0, "height": 0, "format": "

Area chart

", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, "templateScope": "local", "x": 1330, "y": 880, "wires": [ [] ] }, { "id": "a8bf2334.279c", "type": "inject", "z": "baa1e3d9.cb29d", "name": "Default: 0.5", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "payload": "0.5", "payloadType": "num", "x": 310, "y": 80, "wires": [ [ "49ea1123.ee1768" ] ] }, { "id": "49ea1123.ee1768", "type": "ui_numeric", "z": "baa1e3d9.cb29d", "name": "sleep_before", "label": "Delay to stabilize image (s)", "tooltip": "Happens before every capture", "group": "4322c187.e73e5", "order": 4, "width": 5, "height": 1, "wrap": false, "passthru": true, "topic": "sleep_before", "format": "{{value}}", "min": "0.1", "max": "5", "step": "0.1", "x": 630, "y": 80, "wires": [ [ "fb887036.12429" ] ] }, { "id": "2911fbc6.d28c24", "type": "ui_template", "z": "c1660bc.e7ff7f8", "group": "c0ebfc57.42527", "name": "Image browser", "order": 1, "width": 24, "height": 24, "format": "
\n
\n \n
\n
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": false, "templateScope": "local", "x": 440, "y": 140, "wires": [ [] ] }, { "id": "572a6daa.6004c4", "type": "link in", "z": "baa1e3d9.cb29d", "name": "", "links": [ "559a8085.1d6b9" ], "x": 795, "y": 260, "wires": [ [ "99b11fe4.2795d" ] ] }, { "id": "642ff403.1ed91c", "type": "ui_text_input", "z": "b771c342.49603", "name": "sample_concentrated_sample_volume", "label": "Concentrated sample volume (mL)", "tooltip": "Volume extracted from the net (in mL)", "group": "3e1ba03d.f01d8", "order": 10, "width": 10, "height": 1, "passthru": true, "mode": "number", "delay": "0", "topic": "sample_concentrated_sample_volume", "x": 590, "y": 360, "wires": [ [ "9f501f49.45645" ] ] }, { "id": "e967b844.46aa48", "type": "ui_text_input", "z": "b771c342.49603", "name": "sample_gear_net_opening", "label": "Net opening dimension (mm)", "tooltip": "Size of the net mouth opening (in mm)", "group": "cf5d9f0e.d57e7", "order": 3, "width": 10, "height": 1, "passthru": true, "mode": "number", "delay": "0", "topic": "sample_gear_net_opening", "x": 620, "y": 320, "wires": [ [ "9f501f49.45645" ] ] }, { "id": "8032ea50.1b57f", "type": "ui_template", "z": "baa1e3d9.cb29d", "group": "b5d61bc7.54fe48", "name": "progress header", "order": 1, "width": 0, "height": 0, "format": "

Capture progress

", "storeOutMessages": false, "fwdInMessages": false, "resendOnRefresh": false, "templateScope": "local", "x": 1270, "y": 940, "wires": [ [] ] }, { "id": "eaf74a43.fa27d", "type": "switch", "z": "1371dec5.76e671", "name": "if disk > 90%", "property": "payload", "propertyType": "msg", "rules": [ { "t": "gte", "v": "90", "vt": "num" } ], "checkall": "true", "repair": false, "outputs": 1, "x": 590, "y": 420, "wires": [ [ "6d09f428.930bcc" ] ] }, { "id": "46d5e78b.15f998", "type": "ui_toast", "z": "1371dec5.76e671", "position": "dialog", "displayTime": "10", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 1070, "y": 420, "wires": [ [] ] }, { "id": "24df077a.cb252", "type": "change", "z": "1371dec5.76e671", "name": "full disk msg", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 910, "y": 420, "wires": [ [ "46d5e78b.15f998" ] ] }, { "id": "df1ea904.cd261", "type": "ui_slider", "z": "baa1e3d9.cb29d", "name": "imaging_pump_volume", "label": "Pumped volume (mL)", "tooltip": "inbetween frames", "group": "4322c187.e73e5", "order": 3, "width": 0, "height": 0, "passthru": true, "outs": "end", "topic": "imaging_pump_volume", "min": "0.001", "max": "0.5", "step": "0.001", "x": 590, "y": 320, "wires": [ [ "fb887036.12429", "67091ac0.8f9f6c" ] ] }, { "id": "a4abb1ae.2ae418", "type": "subflow:1c24ad9c.bebec2", "z": "baa1e3d9.cb29d", "name": "", "env": [], "x": 890, "y": 540, "wires": [ [] ] }, { "id": "cfc783d7.d6ceb", "type": "link in", "z": "bccd1f23.87219", "name": "Camera Name", "links": [ "559a8085.1d6b9" ], "x": 1035, "y": 200, "wires": [ [ "8038414a.34461" ] ] }, { "id": "c0ce5626.b6c5", "type": "ui_toast", "z": "b771c342.49603", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 1070, "y": 460, "wires": [ [] ] }, { "id": "33c28dc1.238002", "type": "function", "z": "cb95299c.2817c8", "name": "prepare segmentation", "func": "global.set('obj_counter', 0);\n\nvar segmentation_list = flow.get('segmentation_list')\nif (segmentation_list !== undefined && segmentation_list !== \"\") {\n msg.payload['path'] = segmentation_list\n}\n\n\nvar force = flow.get('force')\nif (force !== undefined && force !== \"\") {\n msg.payload['settings'] = {\"force\":Boolean(force)}\n}\n\n\nvar recursive = flow.get('recursive')\nif (recursive !== undefined && recursive !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"recursive\"] = Boolean(recursive)\n }\n else{\n msg.payload['settings'] = {\"recursive\": Boolean(recursive)}\n }\n}\n\nvar ecotaxa = flow.get('ecotaxa')\nif (ecotaxa !== undefined && ecotaxa !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"ecotaxa\"] = Boolean(ecotaxa)\n }\n else{\n msg.payload['settings'] = {\"ecotaxa\": Boolean(ecotaxa)}\n }\n}\n\nvar keep = flow.get('keep')\nif (keep !== undefined && keep !== \"\") {\n if (\"settings\" in msg.payload){\n msg.payload.settings[\"keep\"] = Boolean(keep)\n }\n else{\n msg.payload['settings'] = {\"keep\": Boolean(keep)}\n }\n}\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 620, "y": 460, "wires": [ [ "16f3cef4.0acac9" ] ] }, { "id": "b9bf06d6.26c518", "type": "exec", "z": "f21ba04.c26266", "command": "sudo iwlist wlan0 scan | grep ESSID | sed 's/ESSID://g;s/\"//g;s/^ *//;s/ *$//'", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "scan", "x": 450, "y": 80, "wires": [ [ "9642cb31.663b4" ], [], [] ] }, { "id": "9642cb31.663b4", "type": "function", "z": "f21ba04.c26266", "name": "parseOptions", "func": "var ssids = msg.payload.split('\\n').filter(s => !!s)\n\nssids = [...new Set(ssids)];\n\nmsg.options = ssids\nmsg.payload = null\n\nreturn msg;", "outputs": 1, "noerr": 0, "x": 640, "y": 80, "wires": [ [ "dbc0d44.5361b28" ] ] }, { "id": "3db572cd.cf972e", "type": "inject", "z": "f21ba04.c26266", "name": "once", "props": [ { "p": "payload" }, { "p": "topic", "vt": "str" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "payload": "", "payloadType": "date", "x": 270, "y": 180, "wires": [ [ "b9bf06d6.26c518", "4c0400c.69a1e8", "448b4c37.be50bc" ] ] }, { "id": "dbc0d44.5361b28", "type": "ui_dropdown", "z": "f21ba04.c26266", "name": "", "label": "Wifi", "tooltip": "", "place": "Select a WIFI", "group": "9e409235.73cd7", "order": 2, "width": 0, "height": 0, "passthru": false, "multiple": false, "options": [], "payload": "", "topic": "", "x": 830, "y": 80, "wires": [ [ "cdfa9013.b91278" ] ] }, { "id": "2bf338e3.966468", "type": "ui_button", "z": "f21ba04.c26266", "name": "", "group": "9e409235.73cd7", "order": 1, "width": 0, "height": 0, "passthru": false, "label": "Scan", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-wifi fa-2x", "payload": "true", "payloadType": "bool", "topic": "", "x": 270, "y": 40, "wires": [ [ "b9bf06d6.26c518" ] ] }, { "id": "63b885ac.46f384", "type": "switch", "z": "f21ba04.c26266", "name": "ifWifi", "property": "name", "propertyType": "msg", "rules": [ { "t": "eq", "v": "Wifi", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 1, "x": 271, "y": 80, "wires": [ [ "b9bf06d6.26c518", "4c0400c.69a1e8", "448b4c37.be50bc" ] ] }, { "id": "4c0400c.69a1e8", "type": "exec", "z": "f21ba04.c26266", "command": "ifconfig wlan0", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "getInfo", "x": 460, "y": 180, "wires": [ [ "bcb20e39.00cea8" ], [], [] ] }, { "id": "bcb20e39.00cea8", "type": "function", "z": "f21ba04.c26266", "name": "parse IP Info", "func": "if (msg.payload === null){\n var ip = \"\";\n var mask = \"\";\n var broadcast = \"\";\n}\nelse{\n var ip = msg.payload.match(/inet ([0-9\\.]+)/)[1];\n var mask = msg.payload.match(/netmask ([0-9\\.]+)/)[1];\n var broadcast = msg.payload.match(/broadcast ([0-9\\.]+)/)[1];\n}\n\nreturn [{topic: 'ip', payload: ip},{topic: 'mask', payload: mask},{topic: 'broadcast', payload: broadcast}]", "outputs": 3, "noerr": 0, "initialize": "", "finalize": "", "x": 730, "y": 180, "wires": [ [ "d71c8185.800fd" ], [ "67d052ba.99ff24" ], [ "dc305a26.b33fc" ] ], "outputLabels": [ "ip", "mask", "broadcast" ] }, { "id": "d71c8185.800fd", "type": "ui_text", "z": "f21ba04.c26266", "group": "919923a3.d10868", "order": 2, "width": 0, "height": 0, "name": "", "label": "IP", "format": "{{msg.payload || '---'}}", "layout": "row-spread", "x": 990, "y": 141, "wires": [] }, { "id": "67d052ba.99ff24", "type": "ui_text", "z": "f21ba04.c26266", "group": "919923a3.d10868", "order": 3, "width": 0, "height": 0, "name": "", "label": "Netmask", "format": "{{msg.payload || '---'}}", "layout": "row-spread", "x": 1000, "y": 181, "wires": [] }, { "id": "dc305a26.b33fc", "type": "ui_text", "z": "f21ba04.c26266", "group": "919923a3.d10868", "order": 4, "width": 0, "height": 0, "name": "", "label": "Broadcast", "format": "{{msg.payload || '---'}}", "layout": "row-spread", "x": 1010, "y": 220, "wires": [] }, { "id": "94b2e8fc.aa20e", "type": "ui_form", "z": "f21ba04.c26266", "name": "", "label": "Update", "group": "9e409235.73cd7", "order": 3, "width": 0, "height": 0, "options": [ { "label": "SSID", "value": "ssid", "type": "text", "required": true, "rows": null }, { "label": "Password", "value": "password", "type": "text", "required": true, "rows": null } ], "formValue": { "ssid": "", "password": "" }, "payload": "", "submit": "Add the network", "cancel": "Reset fields", "topic": "", "x": 1160, "y": 80, "wires": [ [ "d59021e3.1b63e8" ] ] }, { "id": "cdfa9013.b91278", "type": "function", "z": "f21ba04.c26266", "name": "insert ssid", "func": "\nmsg.payload = {ssid: msg.payload}\n\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 990, "y": 80, "wires": [ [ "94b2e8fc.aa20e" ] ] }, { "id": "448b4c37.be50bc", "type": "exec", "z": "f21ba04.c26266", "command": "iwgetid", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "getCurrentSSID", "x": 480, "y": 260, "wires": [ [ "151819d4.0dbe56" ], [], [] ] }, { "id": "c8a5ae48.ef1308", "type": "ui_text", "z": "f21ba04.c26266", "group": "919923a3.d10868", "order": 1, "width": 0, "height": 0, "name": "", "label": "SSID", "format": "{{msg.payload || '---'}}", "layout": "row-spread", "x": 990, "y": 260, "wires": [] }, { "id": "151819d4.0dbe56", "type": "function", "z": "f21ba04.c26266", "name": "parse SSID", "func": "if (msg.payload !== null){\n var ssid = msg.payload.match(/ESSID:\"([^\"]+)\"/)[1];\n}\nelse\n{\n var ssid = \"\";\n}\n\n\nnode.send({topic: 'ssid', payload: ssid})\n", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 730, "y": 260, "wires": [ [ "c8a5ae48.ef1308" ] ] }, { "id": "ff059f3f.9c0f28", "type": "ui_ui_control", "z": "f21ba04.c26266", "name": "onTab", "events": "all", "x": 130, "y": 80, "wires": [ [ "63b885ac.46f384" ] ] }, { "id": "167d7bd0.679ce4", "type": "function", "z": "f21ba04.c26266", "name": "update contry code", "func": "var template = `sudo sed -i \\\"s/^country.*/country=\"${msg.payload}\"/\\\" /home/pi/wpa_supplicant.conf`\n// sudo tee /etc/wpa_supplicant/wpa_supplicant.conf <\n function selectElementContents(el) {\n var body = document.body, range, sel;\n if (document.createRange && window.getSelection) {\n range = document.createRange();\n sel = window.getSelection();\n sel.removeAllRanges();\n try {\n range.selectNodeContents(el);\n sel.addRange(range);\n } catch (e) {\n range.selectNode(el);\n sel.addRange(range);\n }\n document.execCommand(\"copy\");\n sel.removeAllRanges();\n\n } else if (body.createTextRange) {\n range = body.createTextRange();\n range.moveToElementText(el);\n range.select();\n range.execCommand(\"Copy\");\n }\n }\n\n\n\n Copy Log\n\n\n\n \n \n \n
{{row}}
\n\n", "storeOutMessages": false, "fwdInMessages": false, "resendOnRefresh": false, "templateScope": "local", "x": 1700, "y": 640, "wires": [ [] ] }, { "id": "8b511c2b.9c24c8", "type": "function", "z": "9daf9e2b.019fc", "name": "Log array", "func": "var log = flow.get(\"python_log\")||[];\n\nlog = log.concat(msg.payload.trim().split('\\n'));\n\nwhile (log.length > 500){\n log.shift();\n}\n\nflow.set(\"python_log\", log);\n\nmsg.payload = log;\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 1500, "y": 560, "wires": [ [ "d12008a0.47be4" ] ] }, { "id": "7a1dedf.1c63094", "type": "ui_button", "z": "9daf9e2b.019fc", "name": "", "group": "a7d64879.38298", "order": 2, "width": 0, "height": 0, "passthru": true, "label": "Clear Log", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-eraser", "payload": "", "payloadType": "str", "topic": "", "x": 1260, "y": 720, "wires": [ [ "73500be7.9ab7c4" ] ] }, { "id": "9187bf97.9922b8", "type": "catch", "z": "9daf9e2b.019fc", "name": "Catch Errors", "scope": null, "uncaught": false, "x": 1090, "y": 660, "wires": [ [ "f9a871d5.a73828" ] ] }, { "id": "f9a871d5.a73828", "type": "function", "z": "9daf9e2b.019fc", "name": "Get error", "func": "msg.payload = \"Node Red Error: \" + msg.error + \" created by the message \" + msg.payload;\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 1260, "y": 660, "wires": [ [ "8b511c2b.9c24c8" ] ] }, { "id": "73500be7.9ab7c4", "type": "function", "z": "9daf9e2b.019fc", "name": "Clear log", "func": "flow.set(\"python_log\", [\"Log cleared!\"]);\n\nmsg.payload = [\"Log cleared!\"];\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 1500, "y": 720, "wires": [ [ "d12008a0.47be4" ] ] }, { "id": "7372e83e.5fc0e8", "type": "inject", "z": "9daf9e2b.019fc", "name": "once", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "", "topic": "", "payload": "start", "payloadType": "str", "x": 150, "y": 600, "wires": [ [ "466eb611.4da048" ] ] }, { "id": "f344dc9e.3c9278", "type": "ui_button", "z": "1371dec5.76e671", "name": "", "group": "3ca00bf9.e5cac4", "order": 1, "width": 4, "height": 1, "passthru": false, "label": "Home", "tooltip": "", "color": "", "bgcolor": "", "icon": "home", "payload": "{\"tab\":\"Home\"}", "payloadType": "json", "topic": "", "x": 430, "y": 740, "wires": [ [ "5f94b366.e4d3a4" ] ] }, { "id": "5f94b366.e4d3a4", "type": "ui_ui_control", "z": "1371dec5.76e671", "name": "", "events": "change", "x": 580, "y": 740, "wires": [ [] ] }, { "id": "43cf8ff7.75231", "type": "rpi-gpio out", "z": "9daf9e2b.019fc", "name": "Pump Enable", "pin": "7", "set": true, "level": "1", "freq": "", "out": "out", "x": 410, "y": 80, "wires": [] }, { "id": "4bca8a25.15be3c", "type": "rpi-gpio out", "z": "9daf9e2b.019fc", "name": "Focus Enable", "pin": "32", "set": true, "level": "1", "freq": "", "out": "out", "x": 420, "y": 120, "wires": [] }, { "id": "50f9b5b.a84bccc", "type": "inject", "z": "9daf9e2b.019fc", "name": "Default: ON", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "0.01", "topic": "", "payload": "true", "payloadType": "bool", "x": 150, "y": 100, "wires": [ [ "43cf8ff7.75231", "4bca8a25.15be3c" ] ] }, { "id": "8bd1f3dc.9affe8", "type": "exec", "z": "9daf9e2b.019fc", "command": "", "addpay": true, "append": "", "useSpawn": "false", "timer": "1", "oldrc": false, "name": "git user.name", "x": 1150, "y": 60, "wires": [ [], [], [] ] }, { "id": "b40d1f65.39e14", "type": "template", "z": "9daf9e2b.019fc", "name": "git config", "field": "payload", "fieldType": "msg", "format": "handlebars", "syntax": "mustache", "template": "git config --global --replace-all user.name \"{{payload}}\"", "output": "str", "x": 960, "y": 60, "wires": [ [ "8bd1f3dc.9affe8" ] ] }, { "id": "35eb925e.5f8016", "type": "link in", "z": "9daf9e2b.019fc", "name": "Git config", "links": [ "52af9ac0.60eb24", "3caed565.fad25a" ], "x": 775, "y": 100, "wires": [ [ "b40d1f65.39e14", "6d7dd372.3b7814" ] ] }, { "id": "4e5183bd.e77bac", "type": "exec", "z": "9daf9e2b.019fc", "command": "", "addpay": true, "append": "", "useSpawn": "false", "timer": "1", "oldrc": false, "name": "git user.email", "x": 1150, "y": 140, "wires": [ [], [], [] ] }, { "id": "6d7dd372.3b7814", "type": "template", "z": "9daf9e2b.019fc", "name": "git config", "field": "payload", "fieldType": "msg", "format": "handlebars", "syntax": "mustache", "template": "git config --global --replace-all user.email \"{{payload}}\"", "output": "str", "x": 960, "y": 140, "wires": [ [ "4e5183bd.e77bac" ] ] }, { "id": "e564e9ad.7c312", "type": "ui_button", "z": "9daf9e2b.019fc", "name": "Update", "group": "1be83144.4fe4bf", "order": 10, "width": 6, "height": 1, "passthru": false, "label": "System Update", "tooltip": "", "color": "", "bgcolor": "", "icon": "mi-system_update", "payload": "", "payloadType": "str", "topic": "update", "x": 260, "y": 460, "wires": [ [ "2d2ef1fd.40e6e6" ] ] }, { "id": "2d2ef1fd.40e6e6", "type": "exec", "z": "9daf9e2b.019fc", "command": "bash /home/pi/PlanktonScope/scripts/bash/update.sh", "addpay": true, "append": "", "useSpawn": "true", "timer": "", "oldrc": false, "name": "Update", "x": 460, "y": 460, "wires": [ [ "64f61762.68c788", "8b511c2b.9c24c8", "83c5a708.a5715", "d334d264.8a7728" ], [ "8b511c2b.9c24c8" ], [] ] }, { "id": "8f08c4eb.db74b8", "type": "ui_template", "z": "9daf9e2b.019fc", "group": "1be83144.4fe4bf", "name": "Update message", "order": 1, "width": 12, "height": 2, "format": "
If you want to update to the latest code version of Node-Red and Python, please click here.\nWe are trying to save your configuration changes with git stash and restore them afterwards, but clearly, things may break!\nAlso, you can choose the branch you want to update to. BE CAREFUL, selecting a branch WILL update the code immediately.\nIf you have made changes to the flow, you will lose them. Please commit those changes from Node-Red interface, from the Project History tab.
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, "templateScope": "local", "x": 150, "y": 260, "wires": [ [] ] }, { "id": "64f61762.68c788", "type": "ui_toast", "z": "9daf9e2b.019fc", "position": "dialog", "displayTime": "10", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "Update notif", "x": 730, "y": 440, "wires": [ [] ] }, { "id": "d59021e3.1b63e8", "type": "function", "z": "f21ba04.c26266", "name": "add network", "func": "var data = msg.payload\n\nvar command = `wpa_passphrase \"${data.ssid}\" \"${data.password}\" | sed '/#psk=\".*\"/d' | sudo tee -a /etc/wpa_supplicant/wpa_supplicant.conf > /dev/null`\n \nmsg.payload = command\n\nreturn msg", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 1330, "y": 80, "wires": [ [ "64a1f2f2.3de8b4" ] ] }, { "id": "64a1f2f2.3de8b4", "type": "exec", "z": "f21ba04.c26266", "command": "", "addpay": true, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "Save Network", "x": 1520, "y": 80, "wires": [ [ "6868b4c4.65987c" ], [], [] ] }, { "id": "6868b4c4.65987c", "type": "exec", "z": "f21ba04.c26266", "command": "sudo /usr/bin/autohotspotN >/dev/null", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "reconfigure", "x": 1710, "y": 80, "wires": [ [ "59e24c40.e1a4dc" ], [], [] ] }, { "id": "59e24c40.e1a4dc", "type": "function", "z": "f21ba04.c26266", "name": "showMessage", "func": "msg.payload = \"Wifi configuration updated successfully\"\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 1440, "y": 180, "wires": [ [ "4ecb6be2.ad39f4" ] ] }, { "id": "4ecb6be2.ad39f4", "type": "ui_toast", "z": "f21ba04.c26266", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 1650, "y": 180, "wires": [ [] ] }, { "id": "f30bf784.90d58", "type": "ui_dropdown", "z": "1371dec5.76e671", "name": "", "label": "", "tooltip": "", "place": "Choose USB device", "group": "52d1b77.28369c8", "order": 2, "width": 0, "height": 0, "passthru": false, "multiple": false, "options": [ { "label": "", "value": "No Drive Detected", "type": "str" } ], "payload": "", "topic": "device_path", "x": 840, "y": 820, "wires": [ [ "d1b9fed3.f3ead8" ] ] }, { "id": "fe29acc2.c25d18", "type": "ui_button", "z": "1371dec5.76e671", "name": "Detect drive", "group": "52d1b77.28369c8", "order": 1, "width": 0, "height": 0, "passthru": false, "label": "Detect drive", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-usb fa-2x", "payload": "", "payloadType": "str", "topic": "", "x": 150, "y": 820, "wires": [ [ "4c00cd96.6b2f6c" ] ] }, { "id": "4c00cd96.6b2f6c", "type": "exec", "z": "1371dec5.76e671", "command": "lsblk --bytes --json --paths --output-all", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "detect drive", "x": 330, "y": 820, "wires": [ [ "2dc1e43d.cd3d64" ], [], [] ] }, { "id": "2dc1e43d.cd3d64", "type": "json", "z": "1371dec5.76e671", "name": "", "property": "payload", "action": "", "pretty": false, "x": 490, "y": 820, "wires": [ [ "6b730649.09351" ] ] }, { "id": "6b730649.09351", "type": "change", "z": "1371dec5.76e671", "name": "", "rules": [ { "t": "set", "p": "options", "pt": "msg", "to": "[payload.blockdevices.children[mountpoint=null].name]", "tot": "jsonata" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 660, "y": 820, "wires": [ [ "f30bf784.90d58" ] ] }, { "id": "1ece8d8e.1008e2", "type": "ui_button", "z": "1371dec5.76e671", "name": "Backup to USB", "group": "52d1b77.28369c8", "order": 3, "width": 0, "height": 0, "passthru": false, "label": "Backup to USB", "tooltip": "", "color": "", "bgcolor": "", "icon": "archive", "payload": "", "payloadType": "str", "topic": "USB Backup", "x": 160, "y": 900, "wires": [ [ "6b2fed77.883c0c" ] ] }, { "id": "d1b9fed3.f3ead8", "type": "function", "z": "1371dec5.76e671", "name": "set local", "func": "flow.set(msg.topic,msg.payload);", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 1000, "y": 820, "wires": [ [] ] }, { "id": "6b2fed77.883c0c", "type": "function", "z": "1371dec5.76e671", "name": "get device_path", "func": "msg.payload = flow.get(\"device_path\");\nreturn msg", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 360, "y": 900, "wires": [ [ "df4d4d6a.24787" ] ] }, { "id": "c74fe76.bcba718", "type": "exec", "z": "1371dec5.76e671", "command": "sudo /home/pi/PlanktonScope/scripts/bash/usb_backup.sh", "addpay": true, "append": "", "useSpawn": "true", "timer": "", "oldrc": false, "name": "usb_backup.sh", "x": 720, "y": 920, "wires": [ [ "72f5e8d4.40fcb8" ], [], [ "a2c36500.6d376" ] ] }, { "id": "df4d4d6a.24787", "type": "switch", "z": "1371dec5.76e671", "name": "No Drive", "property": "payload", "propertyType": "msg", "rules": [ { "t": "eq", "v": "No Drive Detected", "vt": "str" }, { "t": "else" } ], "checkall": "false", "repair": false, "outputs": 2, "x": 520, "y": 900, "wires": [ [ "9a577caa.1535a" ], [ "c74fe76.bcba718", "4997446.5176d3c" ] ] }, { "id": "9a577caa.1535a", "type": "ui_toast", "z": "1371dec5.76e671", "position": "dialog", "displayTime": "5", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 710, "y": 880, "wires": [ [] ] }, { "id": "72f5e8d4.40fcb8", "type": "ui_toast", "z": "1371dec5.76e671", "position": "top right", "displayTime": "5", "highlight": "", "sendall": true, "outputs": 0, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 930, "y": 900, "wires": [] }, { "id": "81a48376.27a66", "type": "ui_toast", "z": "1371dec5.76e671", "position": "dialog", "displayTime": "5", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "", "name": "", "x": 1110, "y": 980, "wires": [ [] ] }, { "id": "a2c36500.6d376", "type": "function", "z": "1371dec5.76e671", "name": "return code", "func": "switch (msg.payload.code){\ncase 0:\n msg.payload = \"All files successfully copied, you can remove your usb drive!\";\n break;\ncase 1:\n msg.payload = \"There was an error!\";\n break;\ncase 2:\n msg.payload = \"Error: your device is already mounted\"\n break;\ncase 3:\n msg.payload = \"Error while mounting the device\"\n break;\ncase 4:\n msg.payload = \"Error: some files were corrupted during the copy!\"\n break;\n}\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 910, "y": 940, "wires": [ [ "81a48376.27a66" ] ] }, { "id": "dde0025c.3df9f", "type": "ui_button", "z": "1371dec5.76e671", "name": "Purge local", "group": "52d1b77.28369c8", "order": 4, "width": 0, "height": 0, "passthru": false, "label": "Purge local data", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "delete_forever", "payload": "THIS IS GOING TO WIPE ALL THE LOCAL DATA. MAKE SURE YOU DID A BACKUP TO AN USB DRIVE BEFOREHAND.", "payloadType": "str", "topic": "BE EXTRA CAREFUL", "x": 150, "y": 1020, "wires": [ [ "ba72704a.8a38a" ] ] }, { "id": "ba72704a.8a38a", "type": "ui_toast", "z": "1371dec5.76e671", "position": "dialog", "displayTime": "5", "highlight": "", "sendall": true, "outputs": 1, "ok": "GO BACK", "cancel": "YES I'M SURE, I WANT TO PURGE THE DATA", "raw": false, "topic": "Data purge", "name": "", "x": 350, "y": 1020, "wires": [ [ "d80e6307.3aaf8" ] ] }, { "id": "d80e6307.3aaf8", "type": "switch", "z": "1371dec5.76e671", "name": "", "property": "payload", "propertyType": "msg", "rules": [ { "t": "cont", "v": "YES I'M SURE", "vt": "str" } ], "checkall": "true", "repair": false, "outputs": 1, "x": 530, "y": 1020, "wires": [ [ "4a8cb5d4.52e4bc" ] ] }, { "id": "4a8cb5d4.52e4bc", "type": "exec", "z": "1371dec5.76e671", "command": "rm -rf /home/pi/data/img /home/pi/data/objects /home/pi/data/export", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "rm data", "x": 680, "y": 1020, "wires": [ [ "c5b1e763.d1bba8" ], [], [] ] }, { "id": "2dc762df.08cd7e", "type": "inject", "z": "baa1e3d9.cb29d", "name": "Default: 0.01", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "payload": "0.05", "payloadType": "num", "x": 310, "y": 320, "wires": [ [ "df1ea904.cd261" ] ] }, { "id": "c33f1124.af6688", "type": "ui_form", "z": "b771c342.49603", "name": "sample_location", "label": "Sample Location", "group": "cef1e703.bcf3c8", "order": 1, "width": 0, "height": 0, "options": [ { "label": "Latitude (36.574439°N or 36°57.4439'N)", "value": "object_lat", "type": "text", "required": true, "rows": null }, { "label": "Longitude (110.42100°W or 110°4.2100'W)", "value": "object_lon", "type": "text", "required": true, "rows": null }, { "label": "Date (YYYY-MM-DD, UTC)", "value": "object_date", "type": "text", "required": true, "rows": null }, { "label": "Time (HH:MM(:SS), UTC 24h)", "value": "object_time", "type": "text", "required": true, "rows": null } ], "formValue": { "object_lat": "", "object_lon": "", "object_date": "", "object_time": "" }, "payload": "", "submit": "Validate", "cancel": "Reset", "topic": "sample_location", "x": 660, "y": 420, "wires": [ [ "14658615.47c862" ] ] }, { "id": "358908cd.416ab", "type": "ui_form", "z": "b771c342.49603", "name": "net_throw_location", "label": "Net Throw Location", "group": "cf5d9f0e.d57e7", "order": 1, "width": 0, "height": 0, "options": [ { "label": "Latitude (36.574439°N or 36°57.4439'N)", "value": "object_lat", "type": "text", "required": true, "rows": null }, { "label": "Longitude (110.42100°W or 110°4.2100'W)", "value": "object_lon", "type": "text", "required": true, "rows": null }, { "label": "Date (YYYY-MM-DD, UTC)", "value": "object_date", "type": "text", "required": true, "rows": null }, { "label": "Time (HH:MM(:SS), UTC 24h)", "value": "object_time", "type": "text", "required": true, "rows": null } ], "formValue": { "object_lat": "", "object_lon": "", "object_date": "", "object_time": "" }, "payload": "", "submit": "Validate", "cancel": "Reset", "topic": "net_throw_location", "x": 650, "y": 460, "wires": [ [ "14658615.47c862" ] ] }, { "id": "56d40584.eff4e4", "type": "ui_form", "z": "b771c342.49603", "name": "net_retrieval_location", "label": "Net Retrieval Location", "group": "cf5d9f0e.d57e7", "order": 2, "width": 0, "height": 0, "options": [ { "label": "Latitude (36.574439°N or 36°57.4439'N)", "value": "object_lat_end", "type": "text", "required": true, "rows": null }, { "label": "Longitude (110.42100°W or 110°4.2100'W)", "value": "object_lon_end", "type": "text", "required": true, "rows": null }, { "label": "Date (YYYY-MM-DD, UTC)", "value": "object_date_end", "type": "text", "required": true, "rows": null }, { "label": "Time (HH:MM(:SS), UTC 24h)", "value": "object_time_end", "type": "text", "required": true, "rows": null } ], "formValue": { "object_lat_end": "", "object_lon_end": "", "object_date_end": "", "object_time_end": "" }, "payload": "", "submit": "Validate", "cancel": "Reset", "topic": "net_retrieval_location", "x": 640, "y": 500, "wires": [ [ "14658615.47c862" ] ] }, { "id": "14658615.47c862", "type": "function", "z": "b771c342.49603", "name": "Validate Form", "func": "function ConvertDDMMToDD(input) {\n // Input Format 36°57.4439' N, 110°4.2100' W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d\\d°\\d\\d\\.*\\d*\\'\\s*[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00 or 12:00:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d(:[0-5]\\d)?/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM(:SS) (:SS is optional)\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n \n if (time.length > 2){\n if (!((0 <= time[2]) && (time[2] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The seconds should be between 01 and 31\"\n return [null, error]\n }\n }\n else {\n input = input + \":00\"\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\n\nif (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\"}, payload_for_form]\n", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 880, "y": 460, "wires": [ [ "c0ce5626.b6c5" ], [ "56d40584.eff4e4" ] ], "inputLabels": [ "location" ], "outputLabels": [ "checked location", "" ] }, { "id": "296c73f.78ff10c", "type": "delay", "z": "b771c342.49603", "name": "", "pauseType": "delay", "timeout": "1", "timeoutUnits": "seconds", "rate": "1", "nbRateUnits": "1", "rateUnits": "second", "randomFirst": "1", "randomLast": "2", "randomUnits": "milliseconds", "drop": false, "x": 140, "y": 200, "wires": [ [ "a3272681.f271c8" ] ] }, { "id": "46eb1bf8.3dc5f4", "type": "function", "z": "b771c342.49603", "name": "Net check", "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\"]}};\n}\nelse{\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Net_Metadata\"],\"show\":[\"Sample_Sample_Location\"]}};\n}\n\n\nreturn [decknet, activation_msg];", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 1080, "y": 240, "wires": [ [ "516375fd.2ed61c", "470e382a.25691", "fbe32ac8.ff6a38" ], [ "cbb123ab.fd3428" ] ], "outputLabels": [ "decknet activation", "group display control" ] }, { "id": "516375fd.2ed61c", "type": "ui_text_input", "z": "b771c342.49603", "name": "sample_total_flowmeter_start", "label": "Decknet flowmeter start", "tooltip": "in L", "group": "cf5d9f0e.d57e7", "order": 5, "width": 5, "height": 1, "passthru": false, "mode": "text", "delay": "0", "topic": "sample_total_flowmeter_start", "x": 1350, "y": 180, "wires": [ [ "c23967d8.8d088" ] ] }, { "id": "470e382a.25691", "type": "ui_text_input", "z": "b771c342.49603", "name": "sample_total_flowmeter_end", "label": "Decknet flowmeter end", "tooltip": "in L", "group": "cf5d9f0e.d57e7", "order": 6, "width": 5, "height": 1, "passthru": false, "mode": "text", "delay": "0", "topic": "sample_total_flowmeter_end", "x": 1340, "y": 220, "wires": [ [ "c23967d8.8d088" ] ] }, { "id": "c23967d8.8d088", "type": "function", "z": "b771c342.49603", "name": "Store sample_total_volume", "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n global.set(\"sample_total_volume\", sample_total_volume);\n}\n\n", "outputs": 2, "noerr": 0, "initialize": "", "finalize": "", "x": 1640, "y": 200, "wires": [ [], [] ], "outputLabels": [ "decknet activation", "group display control" ] }, { "id": "fbe32ac8.ff6a38", "type": "ui_template", "z": "b771c342.49603", "group": "cf5d9f0e.d57e7", "name": "Decknet flowmeter read", "order": 4, "width": 10, "height": 1, "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, "templateScope": "local", "x": 1330, "y": 140, "wires": [ [] ] }, { "id": "1f63860d.5f5efa", "type": "file in", "z": "4ed26b8b.253504", "name": "", "filename": "/home/pi/PlanktonScope/hardware.json", "format": "utf8", "chunk": false, "sendError": false, "encoding": "none", "x": 380, "y": 80, "wires": [ [ "8c1fda48.d7d828" ] ], "info": "# PlanktonScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" }, { "id": "8c1fda48.d7d828", "type": "json", "z": "4ed26b8b.253504", "name": "Parse JSON", "property": "payload", "action": "", "pretty": false, "x": 650, "y": 80, "wires": [ [ "ddb4b136.fc0b78" ] ] }, { "id": "82099021.9ceb08", "type": "file", "z": "4ed26b8b.253504", "name": "", "filename": "/home/pi/PlanktonScope/hardware.json", "appendNewline": true, "createDir": true, "overwriteFile": "true", "encoding": "none", "x": 780, "y": 200, "wires": [ [] ] }, { "id": "bb0a8725.a1849", "type": "json", "z": "4ed26b8b.253504", "name": "Create JSON", "property": "payload", "action": "str", "pretty": true, "x": 500, "y": 200, "wires": [ [ "82099021.9ceb08" ] ] }, { "id": "f748d952.4b6bc8", "type": "inject", "z": "4ed26b8b.253504", "name": "Load config", "props": [ { "p": "topic", "vt": "str" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "x": 110, "y": 80, "wires": [ [ "1f63860d.5f5efa" ] ] }, { "id": "ddb4b136.fc0b78", "type": "change", "z": "4ed26b8b.253504", "name": "", "rules": [ { "t": "set", "p": "hardware_conf", "pt": "global", "to": "payload", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 870, "y": 80, "wires": [ [] ] }, { "id": "44efaeb3.59bf6", "type": "subflow:4ed26b8b.253504", "z": "1eaf21c8.f7a21e", "name": "", "env": [], "x": 100, "y": 180, "wires": [ [ "e10f5e55.00b828", "c534fd26.13741", "54ba7f16.709ad8" ] ] }, { "id": "e10f5e55.00b828", "type": "change", "z": "1eaf21c8.f7a21e", "name": "Get stepper_type", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "payload.stepper_type", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 330, "y": 140, "wires": [ [ "dee52a36.2af72" ] ] }, { "id": "dee52a36.2af72", "type": "ui_dropdown", "z": "1eaf21c8.f7a21e", "name": "stepper_type", "label": "", "tooltip": "", "place": "", "group": "6be36295.0ab324", "order": 3, "width": 3, "height": 1, "passthru": false, "multiple": false, "options": [ { "label": "", "value": "adafruit", "type": "str" }, { "label": "", "value": "waveshare", "type": "str" } ], "payload": "", "topic": "stepper_type", "x": 610, "y": 140, "wires": [ [ "2068e7f.f4efb18", "8e3b3d3c.955148" ] ] }, { "id": "e41870d7.300eb8", "type": "link out", "z": "1eaf21c8.f7a21e", "name": "Stepper_type change", "links": [ "45a7b5aa.2ed20c" ], "x": 955, "y": 160, "wires": [] }, { "id": "2068e7f.f4efb18", "type": "delay", "z": "1eaf21c8.f7a21e", "name": "", "pauseType": "delay", "timeout": "1", "timeoutUnits": "seconds", "rate": "1", "nbRateUnits": "1", "rateUnits": "second", "randomFirst": "1", "randomLast": "5", "randomUnits": "seconds", "drop": false, "x": 820, "y": 160, "wires": [ [ "e41870d7.300eb8" ] ] }, { "id": "45a7b5aa.2ed20c", "type": "link in", "z": "9daf9e2b.019fc", "name": "Python restart", "links": [ "e41870d7.300eb8" ], "x": 175, "y": 560, "wires": [ [ "466eb611.4da048" ] ] }, { "id": "53d163be.47cf24", "type": "function", "z": "4ed26b8b.253504", "name": "Update and retrieve hardware_conf", "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\nif (msg.topic !== null){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 240, "y": 200, "wires": [ [ "bb0a8725.a1849" ] ] }, { "id": "8e3b3d3c.955148", "type": "subflow:4ed26b8b.253504", "z": "1eaf21c8.f7a21e", "name": "", "env": [], "x": 840, "y": 200, "wires": [ [] ] }, { "id": "c534fd26.13741", "type": "change", "z": "1eaf21c8.f7a21e", "name": "Get stepper_reverse", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "payload.stepper_reverse", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 340, "y": 180, "wires": [ [ "cd1987c7.027f58" ] ] }, { "id": "cd1987c7.027f58", "type": "ui_switch", "z": "1eaf21c8.f7a21e", "name": "stepper_reverse", "label": "Invert stepper output", "tooltip": "Stepper 1 is controlled by output 1 or the other way around", "group": "6be36295.0ab324", "order": 4, "width": 0, "height": 0, "passthru": false, "decouple": "false", "topic": "stepper_reverse", "style": "", "onvalue": "true", "onvalueType": "bool", "onicon": "", "oncolor": "", "offvalue": "false", "offvalueType": "bool", "officon": "", "offcolor": "", "x": 600, "y": 180, "wires": [ [ "8e3b3d3c.955148", "2068e7f.f4efb18" ] ] }, { "id": "54ba7f16.709ad8", "type": "change", "z": "1eaf21c8.f7a21e", "name": "Get pump_steps_per_ml", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "payload.pump_steps_per_ml", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 350, "y": 220, "wires": [ [ "ee58b91c.396108" ] ] }, { "id": "ee58b91c.396108", "type": "ui_text_input", "z": "1eaf21c8.f7a21e", "name": "pump_steps_per_ml", "label": "Pump: steps per mL", "tooltip": "", "group": "6be36295.0ab324", "order": 5, "width": 0, "height": 0, "passthru": false, "mode": "number", "delay": "2000", "topic": "pump_steps_per_ml", "x": 580, "y": 220, "wires": [ [ "2068e7f.f4efb18", "8e3b3d3c.955148" ] ] }, { "id": "be888117.5cd67", "type": "ui_template", "z": "1eaf21c8.f7a21e", "group": "6be36295.0ab324", "name": "Stepper controller type header", "order": 2, "width": 3, "height": 1, "format": "
Stepper controller type
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, "templateScope": "local", "x": 550, "y": 100, "wires": [ [] ] }, { "id": "7534dfd9.8cf3e8", "type": "ui_template", "z": "1eaf21c8.f7a21e", "group": "6be36295.0ab324", "name": "Information", "order": 1, "width": 6, "height": 3, "format": "
\n

Changing one of these values will make the python back-end to restart.

\n

If you are not sure, you probably should not be touching anything here!

\n
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, "templateScope": "local", "x": 610, "y": 60, "wires": [ [] ] }, { "id": "c3cdf9e.1d27308", "type": "subflow:4ed26b8b.253504", "z": "bccd1f23.87219", "name": "", "env": [], "x": 100, "y": 900, "wires": [ [ "6be64480.7e7e24", "6d49d161.13628" ] ] }, { "id": "6be64480.7e7e24", "type": "change", "z": "bccd1f23.87219", "name": "Get wb_red_gain", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "payload.wb_red_gain", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 290, "y": 880, "wires": [ [ "43737d43.eb0e9c" ] ] }, { "id": "6d49d161.13628", "type": "change", "z": "bccd1f23.87219", "name": "Get wb_blue_gain", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "payload.wb_blue_gain", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 290, "y": 920, "wires": [ [ "7b699798.3d568" ] ] }, { "id": "56835fa1.2fe538", "type": "subflow:4ed26b8b.253504", "z": "bccd1f23.87219", "name": "", "env": [], "x": 720, "y": 920, "wires": [ [] ] }, { "id": "3ad9835.08c937c", "type": "function", "z": "1c24ad9c.bebec2", "name": "get config payload", "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 410, "y": 160, "wires": [ [ "2e6ddf51.c0dba" ] ] }, { "id": "f408a273.4fb538", "type": "function", "z": "b771c342.49603", "name": "get sample_gear_net_opening", "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nglobal.set(\"sample_gear_net_opening\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 350, "y": 320, "wires": [ [ "e967b844.46aa48" ] ] }, { "id": "fa12f9f8.00cfa8", "type": "subflow:1c24ad9c.bebec2", "z": "cb95299c.2817c8", "name": "", "env": [], "x": 430, "y": 380, "wires": [ [ "3b72d11c.86e9e6" ] ] }, { "id": "3b72d11c.86e9e6", "type": "function", "z": "cb95299c.2817c8", "name": "get process_id", "func": "msg.payload = msg.payload.process_id;\nmsg.topic = \"process_id\";\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 600, "y": 380, "wires": [ [ "c8749cbb.55254" ] ] }, { "id": "8dff1648.82e42", "type": "function", "z": "b771c342.49603", "name": "get object_depth_max", "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nglobal.set(\"object_depth_max\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 320, "y": 240, "wires": [ [ "9c7f7fc9.c8d3a" ] ] }, { "id": "9f04c5ec.75f3d8", "type": "function", "z": "b771c342.49603", "name": "get object_depth_min", "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nglobal.set(\"object_depth_min\",msg.payload);\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 320, "y": 280, "wires": [ [ "317eeeb7.8d3042" ] ] }, { "id": "326a1d95.ca21aa", "type": "subflow:1c24ad9c.bebec2", "z": "bccd1f23.87219", "name": "", "x": 550, "y": 1080, "wires": [ [] ] }, { "id": "328cec46.09e40c", "type": "change", "z": "bccd1f23.87219", "name": "", "rules": [ { "t": "set", "p": "acq_fnumber_objective", "pt": "global", "to": "payload", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 920, "y": 160, "wires": [ [ "8038414a.34461" ] ] }, { "id": "f4f6e3fa.0234f", "type": "inject", "z": "9daf9e2b.019fc", "name": "once", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "", "topic": "", "payload": "start", "payloadType": "str", "x": 1190, "y": 720, "wires": [ [ "7a1dedf.1c63094" ] ] }, { "id": "991d1df9.3ffb3", "type": "function", "z": "f21ba04.c26266", "name": "reset wpa_supplicant.conf", "func": "country_code = flow.get(\"country_code\")\n\nvar template = `sudo tee /etc/wpa_supplicant/wpa_supplicant.conf < EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\nif (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\"){\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n \n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2))/1000// cubic meter\n sample_total_volume = Math.round((sample_total_volume + Number.EPSILON) * 1000) / 1000\n global.set(\"sample_total_volume\", sample_total_volume)\n msg.payload = sample_total_volume\n}\nelse {\n msg.payload = 0\n}\n\n\nreturn msg", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 770, "y": 580, "wires": [ [] ] }, { "id": "4fb4e0ad.c417c", "type": "ui_text", "z": "b771c342.49603", "group": "fc5e4e6f.5b1c8", "order": 6, "width": 5, "height": 1, "name": "Latitude", "label": "Latitude", "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", "layout": "col-center", "x": 700, "y": 820, "wires": [] }, { "id": "8d2b5026.13e6e8", "type": "ui_text", "z": "b771c342.49603", "group": "fc5e4e6f.5b1c8", "order": 7, "width": 5, "height": 1, "name": "Longitude", "label": "Longitude", "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", "layout": "col-center", "x": 700, "y": 860, "wires": [] }, { "id": "258b4562.9f778a", "type": "function", "z": "b771c342.49603", "name": "Convert DD to DMS", "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 490, "y": 900, "wires": [ [ "4fb4e0ad.c417c", "8d2b5026.13e6e8" ] ] }, { "id": "7c4ce5f3.62dd5c", "type": "ui_text", "z": "b771c342.49603", "group": "fc5e4e6f.5b1c8", "order": 4, "width": 2, "height": 1, "name": "Speed", "label": "Speed", "format": "{{msg.payload}} kts", "layout": "col-center", "x": 690, "y": 900, "wires": [] }, { "id": "54e37580.fdc31c", "type": "ui_text", "z": "b771c342.49603", "group": "fc5e4e6f.5b1c8", "order": 5, "width": 2, "height": 1, "name": "Direction", "label": "Direction", "format": "{{msg.payload.track}} °", "layout": "col-center", "x": 700, "y": 940, "wires": [] }, { "id": "cc21ca16.b92928", "type": "function", "z": "b771c342.49603", "name": "GPS Mode", "func": "switch (msg.payload.mode){\n case 1:msg.payload = \"No Fix\"; break\n case 2:msg.payload = \"2D Fix\"; break\n case 3:msg.payload = \"3D Fix\"; break\n default: msg.payload = \"No info\"\n}\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 450, "y": 780, "wires": [ [ "7116e906.9f50f" ] ] }, { "id": "4a4de52c.cf2884", "type": "function", "z": "b771c342.49603", "name": "Speed conversion", "func": "msg.payload = (0|msg.payload.speed) * 1.9438\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 470, "y": 900, "wires": [ [ "7c4ce5f3.62dd5c" ] ] }, { "id": "35ad311f.344c76", "type": "ui_text", "z": "b771c342.49603", "group": "fc5e4e6f.5b1c8", "order": 2, "width": 5, "height": 1, "name": "Time", "label": "Time", "format": "{{msg.payload.time}}", "layout": "col-center", "x": 690, "y": 980, "wires": [] }, { "id": "dab82064.26a8d", "type": "ui_button", "z": "eaae323a.31b3", "name": "Unlock button", "group": "f3ca28ef.4df0a8", "order": 2, "width": 0, "height": 0, "passthru": false, "label": "Unlock button", "tooltip": "", "color": "", "bgcolor": "", "icon": "", "payload": "shutdown", "payloadType": "flow", "topic": "", "x": 140, "y": 400, "wires": [ [ "6c3a3b4.78cad44" ] ] }, { "id": "1c658761.b852a1", "type": "ui_toast", "z": "eaae323a.31b3", "position": "dialog", "displayTime": "3", "highlight": "", "sendall": true, "outputs": 1, "ok": "YES PLEASE", "cancel": "NO!", "raw": false, "topic": "Are you sure?", "name": "Confirmation message", "x": 800, "y": 380, "wires": [ [ "8f1b8e23.daafe" ] ] }, { "id": "a48ff63f.db5e18", "type": "inject", "z": "eaae323a.31b3", "name": "disabled", "props": [ { "p": "enabled", "v": "false", "vt": "bool" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "x": 160, "y": 360, "wires": [ [ "d58039a9.6e7928" ] ] }, { "id": "b67a7147.65fcd8", "type": "ui_button", "z": "eaae323a.31b3", "name": "Shutdown button", "group": "f3ca28ef.4df0a8", "order": 4, "width": 0, "height": 0, "passthru": false, "label": "Shutdown", "tooltip": "", "color": "", "bgcolor": "#AD1625", "icon": "fa-power-off fa-2x", "payload": "Do you want to turn the machine off now?", "payloadType": "str", "topic": "", "x": 570, "y": 380, "wires": [ [ "1c658761.b852a1" ] ] }, { "id": "d58039a9.6e7928", "type": "change", "z": "eaae323a.31b3", "name": "", "rules": [ { "t": "set", "p": "shutdown", "pt": "flow", "to": "false", "tot": "bool" }, { "t": "set", "p": "enabled", "pt": "msg", "to": "shutdown", "tot": "flow" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 340, "y": 360, "wires": [ [ "b67a7147.65fcd8" ] ] }, { "id": "6c3a3b4.78cad44", "type": "function", "z": "eaae323a.31b3", "name": "Toggle", "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 310, "y": 400, "wires": [ [ "b67a7147.65fcd8" ] ] }, { "id": "d1153ad6.40d738", "type": "ui_template", "z": "eaae323a.31b3", "group": "f3ca28ef.4df0a8", "name": "Shutdown information", "order": 1, "width": 0, "height": 0, "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRememver to first unlock the shutdown button.\n
", "storeOutMessages": true, "fwdInMessages": false, "resendOnRefresh": true, "templateScope": "local", "x": 120, "y": 320, "wires": [ [] ] }, { "id": "e08cfcb8.2a67e8", "type": "link out", "z": "eaae323a.31b3", "name": "Home shutdown button", "links": [ "b81b990a.d4dca" ], "x": 715, "y": 480, "wires": [] }, { "id": "ce7087fc.dcc9e8", "type": "ui_toast", "z": "eaae323a.31b3", "position": "dialog", "displayTime": "10", "highlight": "", "sendall": true, "outputs": 1, "ok": "OK", "cancel": "", "raw": false, "topic": "Turning off now!", "name": "Shutdown message", "x": 620, "y": 520, "wires": [ [] ] }, { "id": "b81b990a.d4dca", "type": "link in", "z": "9daf9e2b.019fc", "name": "Shutdown", "links": [ "e08cfcb8.2a67e8" ], "x": 455, "y": 720, "wires": [ [ "4af9112d.87767" ] ] }, { "id": "7d1626a0.deb85", "type": "change", "z": "eaae323a.31b3", "name": "shutdown!", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "shutdown", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 350, "y": 480, "wires": [ [ "e08cfcb8.2a67e8" ] ] }, { "id": "8f1b8e23.daafe", "type": "switch", "z": "eaae323a.31b3", "name": "", "property": "payload", "propertyType": "msg", "rules": [ { "t": "eq", "v": "NO!", "vt": "str" }, { "t": "else" } ], "checkall": "true", "repair": false, "outputs": 2, "x": 150, "y": 480, "wires": [ [ "d58039a9.6e7928" ], [ "7d1626a0.deb85", "281a56c9.ec7902" ] ] }, { "id": "281a56c9.ec7902", "type": "change", "z": "eaae323a.31b3", "name": "Shutdown message", "rules": [ { "t": "set", "p": "payload", "pt": "msg", "to": "Please wait a minute before disconnecting the machine from its power supply!", "tot": "str" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 380, "y": 520, "wires": [ [ "ce7087fc.dcc9e8" ] ] }, { "id": "f6ff420b.0af648", "type": "ui_slider", "z": "bccd1f23.87219", "name": "focus_speed", "label": "Focus Speed", "tooltip": "in µm/sec", "group": "fbd92986.1028c8", "order": 5, "width": 0, "height": 0, "passthru": true, "outs": "end", "topic": "focus_speed", "min": "250", "max": "2500", "step": "250", "x": 550, "y": 460, "wires": [ [ "dc48dc42.98d18" ] ] }, { "id": "2d371e59.b0e50a", "type": "inject", "z": "bccd1f23.87219", "name": "Default: 1000µm/s", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "0.5", "topic": "", "payload": "1000", "payloadType": "num", "x": 130, "y": 460, "wires": [ [ "f6ff420b.0af648" ] ] }, { "id": "167cda35.c9b6ae", "type": "ui_button", "z": "bccd1f23.87219", "name": "", "group": "fbd92986.1028c8", "order": 1, "width": 3, "height": 1, "passthru": false, "label": "UP 100um", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-angle-up fa-3x", "payload": "{\"action\":\"move\",\"direction\":\"UP\",\"distance\":0.1}", "payloadType": "json", "topic": "actuator/focus", "x": 350, "y": 520, "wires": [ [ "62030521.88317c" ] ] }, { "id": "72a7c597.9374fc", "type": "ui_button", "z": "bccd1f23.87219", "name": "", "group": "fbd92986.1028c8", "order": 6, "width": 3, "height": 1, "passthru": false, "label": "DOWN 100um", "tooltip": "", "color": "", "bgcolor": "", "icon": "fa-angle-down fa-3x", "payload": "{\"action\":\"move\",\"direction\":\"DOWN\",\"distance\":0.1}", "payloadType": "json", "topic": "actuator/focus", "x": 340, "y": 600, "wires": [ [ "62030521.88317c" ] ] }, { "id": "e73fd87d.d24e4", "type": "function", "z": "b771c342.49603", "name": "get acq_minimum_mesh", "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 330, "y": 360, "wires": [ [ "5517c129.1617e" ] ] }, { "id": "489c8e06.cc7d6", "type": "function", "z": "b771c342.49603", "name": "get acq_maximum_mesh", "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", "outputs": 1, "noerr": 0, "x": 330, "y": 400, "wires": [ [ "9f3edbe2.43c728" ] ] }, { "id": "9f3edbe2.43c728", "type": "ui_numeric", "z": "b771c342.49603", "name": "acq_maximum_mesh", "label": "Max fraction size (μm)", "tooltip": "", "group": "3e1ba03d.f01d8", "order": 8, "width": 5, "height": 1, "wrap": false, "passthru": true, "topic": "acq_maximum_mesh", "format": "{{value}}", "min": "200", "max": "2000", "step": "100", "x": 640, "y": 400, "wires": [ [ "9f501f49.45645" ] ] }, { "id": "5517c129.1617e", "type": "ui_numeric", "z": "b771c342.49603", "name": "acq_minimum_mesh", "label": "Min fraction size (μm)", "tooltip": "", "group": "3e1ba03d.f01d8", "order": 7, "width": 5, "height": 1, "wrap": false, "passthru": true, "topic": "acq_minimum_mesh", "format": "{{value}}", "min": 0, "max": "300", "step": "10", "x": 640, "y": 360, "wires": [ [ "9f501f49.45645" ] ] }, { "id": "3ea12061.ce62c", "type": "ui_list", "z": "cb95299c.2817c8", "group": "abeb6dad.635a2", "name": "", "order": 7, "width": 10, "height": 11, "lineType": "one", "actionType": "check", "allowHTML": false, "outputs": 1, "topic": "", "x": 770, "y": 140, "wires": [ [ "cb3b87b5.63c4" ] ] }, { "id": "8bd8fb2c.53fa4", "type": "dir2files", "z": "cb95299c.2817c8", "name": "", "dirname": "/home/pi/data/img/", "pathRegex": "", "isRecursive": true, "findDir": true, "isArray": true, "x": 460, "y": 140, "wires": [ [ "ba2947.c854deb8" ] ] }, { "id": "127d4ee.f8ad1b1", "type": "ui_button", "z": "cb95299c.2817c8", "name": "Refresh", "group": "abeb6dad.635a2", "order": 6, "width": 0, "height": 0, "passthru": false, "label": "Update acquisition's folder list", "tooltip": "Refresh the list of previous acquisitions", "color": "", "bgcolor": "", "icon": "mi-find_replace", "payload": "", "payloadType": "date", "topic": "update", "x": 260, "y": 140, "wires": [ [ "8bd8fb2c.53fa4", "56f845f5.e7c054" ] ] }, { "id": "946ce9ee.092cf", "type": "inject", "z": "cb95299c.2817c8", "name": "Init", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "payload": "", "payloadType": "date", "x": 270, "y": 100, "wires": [ [ "8bd8fb2c.53fa4", "56f845f5.e7c054" ] ] }, { "id": "87f8732c.caf648", "type": "ui_multistate_switch", "z": "bccd1f23.87219", "name": "ISO selector", "group": "8c38a81e.9897a8", "order": 1, "width": 10, "height": 1, "label": "ISO", "stateField": "payload", "enableField": "enable", "rounded": true, "useThemeColors": true, "hideSelectedLabel": false, "options": [ { "label": "100", "value": "100", "valueType": "str", "color": "#009933" }, { "label": "200", "value": "200", "valueType": "str", "color": "#999999" }, { "label": "320", "value": "320", "valueType": "str", "color": "#ff6666" }, { "label": "400", "value": "400", "valueType": "str", "color": "#009999" }, { "label": "500", "value": "500", "valueType": "str", "color": "#cccc00" }, { "label": "640", "value": "640", "valueType": "str", "color": "#ff33cc" }, { "label": "800", "value": "800", "valueType": "str", "color": "#cc6600" } ], "x": 370, "y": 720, "wires": [ [ "8ea9dc9a.c7d87" ] ] }, { "id": "f0775525.cf806", "type": "ui_multistate_switch", "z": "bccd1f23.87219", "name": "light_state", "group": "4248342d.e55fac", "order": 1, "width": 0, "height": 0, "label": "Light ", "stateField": "payload", "enableField": "enable", "rounded": true, "useThemeColors": true, "hideSelectedLabel": false, "options": [ { "label": "Off", "value": "{\"action\":\"off\"}", "valueType": "str", "color": "#009933" }, { "label": "On", "value": "{\"action\":\"on\"}", "valueType": "str", "color": "#999999" } ], "x": 310, "y": 160, "wires": [ [ "99ae4886.8d43c" ] ] }, { "id": "99ae4886.8d43c", "type": "function", "z": "bccd1f23.87219", "name": "Encapsulate settings", "func": "msg.topic = \"light\"\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 500, "y": 160, "wires": [ [ "d31fcead.7e2ef" ] ] }, { "id": "d31fcead.7e2ef", "type": "mqtt out", "z": "bccd1f23.87219", "name": "", "topic": "", "qos": "", "retain": "", "broker": "8dc3722c.06efa8", "x": 670, "y": 160, "wires": [] }, { "id": "83c5a708.a5715", "type": "exec", "z": "9daf9e2b.019fc", "command": "git --git-dir=/home/pi/PlanktonScope/.git describe --long --tags", "addpay": false, "append": "", "useSpawn": "true", "timer": "", "oldrc": false, "name": "Get git revision", "x": 660, "y": 340, "wires": [ [ "af2b8d95.195bb8", "aa2dbb6.4cd9948" ], [], [] ] }, { "id": "d334d264.8a7728", "type": "exec", "z": "9daf9e2b.019fc", "command": "git --git-dir=/home/pi/PlanktonScope/.git branch --list", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "Get git branch", "x": 660, "y": 260, "wires": [ [ "e5e8e66c.899588" ], [], [] ] }, { "id": "e4342b66.72972", "type": "ui_button", "z": "9daf9e2b.019fc", "name": "get git branch", "group": "1be83144.4fe4bf", "order": 3, "width": 5, "height": 1, "passthru": false, "label": "Update branch list", "tooltip": "", "color": "", "bgcolor": "", "icon": "mi-compare_arrows", "payload": "", "payloadType": "str", "topic": "", "x": 410, "y": 260, "wires": [ [ "d334d264.8a7728" ] ] }, { "id": "3f13b9f8.bac94e", "type": "ui_dropdown", "z": "9daf9e2b.019fc", "name": "Git branch list", "label": "Switch branch to", "tooltip": "If you choose something, the code WILL be updated to that branch, don't touch if you don't know what you are doing!", "place": "branch", "group": "1be83144.4fe4bf", "order": 5, "width": 6, "height": 1, "passthru": false, "multiple": false, "options": [], "payload": "", "topic": "branch", "x": 1160, "y": 320, "wires": [ [ "2d2ef1fd.40e6e6" ] ] }, { "id": "e5e8e66c.899588", "type": "function", "z": "9daf9e2b.019fc", "name": "filter branch", "func": "msg.options = msg.payload.trimEnd().split('\\n')\nmsg.payload = msg.options.find((str) => str.startsWith('*'));\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 930, "y": 260, "wires": [ [ "3f13b9f8.bac94e" ] ] }, { "id": "c1fb03f7.e675f8", "type": "inject", "z": "9daf9e2b.019fc", "name": "once", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": "", "topic": "", "payload": "start", "payloadType": "str", "x": 430, "y": 300, "wires": [ [ "d334d264.8a7728", "83c5a708.a5715" ] ] }, { "id": "af2b8d95.195bb8", "type": "ui_text", "z": "9daf9e2b.019fc", "group": "1be83144.4fe4bf", "order": 2, "width": 7, "height": 1, "name": "", "label": "Current code version", "format": "{{msg.payload}}", "layout": "row-center", "x": 860, "y": 320, "wires": [] }, { "id": "cb3b87b5.63c4", "type": "function", "z": "cb95299c.2817c8", "name": "update segmentation_list", "func": "var segmentation_list = flow.get('segmentation_list');\n\nif (segmentation_list === undefined || segmentation_list === \"\") {\n segmentation_list = []\n console.log(\"error\")\n}\n\npath = \"/home/pi/data/img/\" + msg.payload.title\n\nif (msg.payload.isChecked){\n if (segmentation_list.includes(path) === false){\n segmentation_list.push(path)\n }\n // Element already in list, don't push it more than once\n //segmentation_list.push(msg.payload[\"title\"])\n}\nelse {\n var pos = segmentation_list.indexOf(path)\n segmentation_list.splice(pos, 1)\n}\n\nflow.set('segmentation_list', segmentation_list)", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 950, "y": 140, "wires": [ [] ] }, { "id": "56f845f5.e7c054", "type": "change", "z": "cb95299c.2817c8", "name": "Reset segmentation_list", "rules": [ { "t": "set", "p": "segmentation_list", "pt": "flow", "to": "[]", "tot": "json" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 510, "y": 100, "wires": [ [] ] }, { "id": "7fc72364.8f038c", "type": "ui_template", "z": "cb95299c.2817c8", "group": "abeb6dad.635a2", "name": "Update message", "order": 1, "width": 10, "height": 3, "format": "
You can choose here in which folder(s) you want the segmentation script to run. A few details though:\n
The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
", "storeOutMessages": true, "fwdInMessages": true, "resendOnRefresh": true, "templateScope": "local", "x": 270, "y": 40, "wires": [ [] ] }, { "id": "6c7f0cc5.ea30d4", "type": "gpsd", "z": "1371dec5.76e671", "name": "", "hostname": "localhost", "port": "2947", "tpv": true, "sky": false, "info": false, "device": false, "gst": false, "att": false, "x": 170, "y": 1360, "wires": [ [ "906072b1.42c7c8", "cd3b05d6.5a3e2", "9b29e0e2.475e08", "96fefa8b.b7d538", "49a98fe9.9450d8", "f2a62d0.f5e135" ] ] }, { "id": "96bc0179.5c37", "type": "ui_text", "z": "1371dec5.76e671", "group": "cfe2288f.a8862", "order": 1, "width": 6, "height": 1, "name": "GPS Status Display", "label": "GPS Status:", "format": "{{msg.payload}}", "layout": "row-center", "x": 650, "y": 1200, "wires": [] }, { "id": "8c731f52.2b5f3", "type": "ui_text", "z": "1371dec5.76e671", "group": "cfe2288f.a8862", "order": 5, "width": 3, "height": 1, "name": "Latitude", "label": "Latitude", "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", "layout": "col-center", "x": 620, "y": 1240, "wires": [] }, { "id": "34e4b5ea.27b4a2", "type": "ui_text", "z": "1371dec5.76e671", "group": "cfe2288f.a8862", "order": 6, "width": 3, "height": 1, "name": "Longitude", "label": "Longitude", "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", "layout": "col-center", "x": 620, "y": 1280, "wires": [] }, { "id": "906072b1.42c7c8", "type": "function", "z": "1371dec5.76e671", "name": "Convert DD to DMS", "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 410, "y": 1260, "wires": [ [ "8c731f52.2b5f3", "34e4b5ea.27b4a2" ] ] }, { "id": "4584c817.0be238", "type": "ui_text", "z": "1371dec5.76e671", "group": "cfe2288f.a8862", "order": 3, "width": 3, "height": 1, "name": "Speed", "label": "Speed", "format": "{{msg.payload}} kts", "layout": "col-center", "x": 610, "y": 1320, "wires": [] }, { "id": "cd3b05d6.5a3e2", "type": "ui_text", "z": "1371dec5.76e671", "group": "cfe2288f.a8862", "order": 4, "width": 3, "height": 1, "name": "Direction", "label": "Direction", "format": "{{msg.payload.track}} °", "layout": "col-center", "x": 620, "y": 1360, "wires": [] }, { "id": "9b29e0e2.475e08", "type": "function", "z": "1371dec5.76e671", "name": "GPS Mode", "func": "switch (msg.payload.mode){\n case 1:msg.payload = \"No Fix\"; break\n case 2:msg.payload = \"2D Fix\"; break\n case 3:msg.payload = \"3D Fix\"; break\n default: msg.payload = \"No info\"\n}\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 390, "y": 1200, "wires": [ [ "96bc0179.5c37" ] ] }, { "id": "96fefa8b.b7d538", "type": "function", "z": "1371dec5.76e671", "name": "Speed conversion", "func": "msg.payload = (0|msg.payload.speed) * 1.9438\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 410, "y": 1320, "wires": [ [ "4584c817.0be238" ] ] }, { "id": "49a98fe9.9450d8", "type": "ui_text", "z": "1371dec5.76e671", "group": "cfe2288f.a8862", "order": 2, "width": 6, "height": 1, "name": "GPS UTC datetime", "label": "GPS UTC datetime", "format": "{{msg.payload.time}}", "layout": "col-center", "x": 650, "y": 1400, "wires": [] }, { "id": "3c3f334e.d691ac", "type": "ui_button", "z": "1371dec5.76e671", "name": "", "group": "cfe2288f.a8862", "order": 6, "width": 0, "height": 0, "passthru": false, "label": "Force local clock update", "tooltip": "", "color": "", "bgcolor": "", "icon": "", "payload": "", "payloadType": "str", "topic": "topic", "x": 670, "y": 1480, "wires": [ [ "c60030d4.317418" ] ] }, { "id": "c60030d4.317418", "type": "exec", "z": "1371dec5.76e671", "command": "sudo hwclock -w", "addpay": false, "append": "", "useSpawn": "false", "timer": "", "oldrc": false, "name": "", "x": 920, "y": 1480, "wires": [ [], [], [] ] }, { "id": "6d144078.508d9", "type": "ui_text", "z": "1371dec5.76e671", "group": "cfe2288f.a8862", "order": 2, "width": 6, "height": 1, "name": "Local UTC datetime", "label": "Local UTC datetime", "format": "{{msg.payload}}", "layout": "col-center", "x": 650, "y": 1440, "wires": [] }, { "id": "f2a62d0.f5e135", "type": "function", "z": "1371dec5.76e671", "name": "", "func": "msg.payload = new Date()\nreturn msg;", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 380, "y": 1440, "wires": [ [ "6d144078.508d9" ] ] }, { "id": "b6bc9b81.ff942", "type": "function", "z": "9daf9e2b.019fc", "name": "get git revision", "links": [ "be6bddd3.2004f" ], "x": 835, "y": 360, "wires": [] }, { "id": "5112444.5be803c", "type": "ui_text", "z": "1371dec5.76e671", "group": "ce9e278.781eed8", "order": 3, "width": 0, "height": 0, "name": "[System Monitoring] version", "label": "Software version", "format": "{{msg.payload}}", "layout": "row-spread", "x": 800, "y": 520, "wires": [] }, { "id": "16548734.7fe631", "type": "function", "z": "1371dec5.76e671", "name": "store version", "func": "msg.payload = \"PlanktoScope-\"+msg.payload.trim()\n\nglobal.set(\"acq_software\",msg.payload);\n\nreturn msg\n", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 860, "y": 360, "wires": [ [ "5112444.5be803c" ] ] }, { "id": "be6bddd3.2004f", "type": "link in", "z": "1371dec5.76e671", "name": "git version", "links": [ "aa2dbb6.4cd9948" ], "x": 455, "y": 520, "wires": [ [ "16548734.7fe631" ] ] }, { "id": "ba2947.c854deb8", "type": "function", "z": "cb95299c.2817c8", "name": "remove common", "func": "function remove_path(item, index, array) {\n array[index] = item.replace(\"/home/pi/data/img/\", \"\")\n} \n\nmsg.payload.forEach(remove_path)\n\nreturn msg", "outputs": 1, "noerr": 0, "initialize": "", "finalize": "", "x": 620, "y": 140, "wires": [ [ "3ea12061.ce62c" ] ] }, { "id": "21af0db1.c2c182", "type": "ui_multistate_switch", "z": "cb95299c.2817c8", "name": "recursive toggle", "group": "abeb6dad.635a2", "order": 2, "width": 5, "height": 1, "label": "Recursive folder", "stateField": "payload", "enableField": "enable", "rounded": true, "useThemeColors": true, "hideSelectedLabel": false, "options": [ { "label": "No", "value": "0", "valueType": "num", "color": "#009933" }, { "label": "Yes", "value": "1", "valueType": "num", "color": "#999999" } ], "x": 480, "y": 220, "wires": [ [ "880b192a.88e2d" ] ] }, { "id": "dffb9881.feef8", "type": "ui_multistate_switch", "z": "cb95299c.2817c8", "name": "force toggle", "group": "abeb6dad.635a2", "order": 3, "width": 5, "height": 1, "label": "Force rework", "stateField": "payload", "enableField": "enable", "rounded": true, "useThemeColors": true, "hideSelectedLabel": false, "options": [ { "label": "No", "value": "0", "valueType": "num", "color": "#009933" }, { "label": "Yes", "value": "1", "valueType": "num", "color": "#999999" } ], "x": 470, "y": 300, "wires": [ [ "a4f68fa6.5d77f8" ] ] }, { "id": "880b192a.88e2d", "type": "change", "z": "cb95299c.2817c8", "name": "", "rules": [ { "t": "set", "p": "recursive", "pt": "flow", "to": "payload", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 690, "y": 240, "wires": [ [] ] }, { "id": "a4f68fa6.5d77f8", "type": "change", "z": "cb95299c.2817c8", "name": "", "rules": [ { "t": "set", "p": "force", "pt": "flow", "to": "payload", "tot": "msg" } ], "action": "", "property": "", "from": "", "to": "", "reg": false, "x": 670, "y": 280, "wires": [ [] ] }, { "id": "1ef1b43b.b0f064", "type": "inject", "z": "cb95299c.2817c8", "name": "0", "props": [ { "p": "payload" } ], "repeat": "", "crontab": "", "once": true, "onceDelay": 0.1, "topic": "", "payload": "0", "payloadType": "num", "x": 270, "y": 280, "wires": [ [ "dffb9881.feef8", "a4f68fa6.5d77f8" ] ] }, { "id": "f078c068.eacf58", "type": "ui_template", "z": "cb95299c.2817c8", "group": "46be9c86.dea684", "name": "Stream Segmented object", "order": 2, "width": 10, "height": 8, "format": "
\n Latest object segmented:
\n \"If\n
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