378 lines
26 KiB
Bash
378 lines
26 KiB
Bash
|
||
#########################################################
|
||
Installation of MorphoCut development version:
|
||
#########################################################
|
||
|
||
$ pip install -U git+https://github.com/morphocut/morphocut.git
|
||
Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
|
||
Collecting git+https://github.com/morphocut/morphocut.git
|
||
Cloning https://github.com/morphocut/morphocut.git to /tmp/pip-req-build-NnGYk4
|
||
Installing build dependencies ... error
|
||
Complete output from command /usr/bin/python -m pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-e4DHrk --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple -- setuptools wheel:
|
||
Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple
|
||
Collecting setuptools
|
||
Downloading https://www.piwheels.org/simple/setuptools/setuptools-45.0.0-py2.py3-none-any.whl (583kB)
|
||
setuptools requires Python '>=3.5' but the running Python is 2.7.16
|
||
|
||
----------------------------------------
|
||
Command "/usr/bin/python -m pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-e4DHrk --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple -- setuptools wheel" failed with error code 1 in None
|
||
|
||
#########################################################
|
||
Test if MorphoCut is properly installed on Python3.7
|
||
#########################################################
|
||
|
||
$ python3.7
|
||
Python 3.7.3 (default, Apr 3 2019, 05:39:12)
|
||
[GCC 8.2.0] on linux
|
||
Type "help", "copyright", "credits" or "license" for more information.
|
||
>>> from morphocut import Call, Pipeline
|
||
Traceback (most recent call last):
|
||
File "<stdin>", line 1, in <module>
|
||
ModuleNotFoundError: No module named 'morphocut'
|
||
|
||
#########################################################
|
||
Installation of MorphoCut packaged on PyPI via pip
|
||
#########################################################
|
||
|
||
$ pip install morphocut
|
||
Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
|
||
Collecting morphocut
|
||
Could not find a version that satisfies the requirement morphocut (from versions: )
|
||
No matching distribution found for morphocut
|
||
|
||
#########################################################
|
||
Installation of MorphoCut packaged on PyPI via pip3
|
||
#########################################################
|
||
|
||
$ pip3 install morphocut
|
||
Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
|
||
Collecting morphocut
|
||
Downloading https://files.pythonhosted.org/packages/7e/c7/1addaf867234dd30db6d1f4bf8d3b685d93b743023a863814451abd5cef8/morphocut-0.1.1-py3-none-any.whl
|
||
Collecting scikit-image>=0.16.0 (from morphocut)
|
||
Downloading https://www.piwheels.org/simple/scikit-image/scikit_image-0.16.2-cp37-cp37m-linux_armv7l.whl (39.7MB)
|
||
100% |████████████████████████████████| 39.7MB 10kB/s
|
||
Collecting tqdm (from morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/72/c9/7fc20feac72e79032a7c8138fd0d395dc6d8812b5b9edf53c3afd0b31017/tqdm-4.41.1-py2.py3-none-any.whl (56kB)
|
||
100% |████████████████████████████████| 61kB 1.6MB/s
|
||
Collecting scipy (from morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/04/ab/e2eb3e3f90b9363040a3d885ccc5c79fe20c5b8a3caa8fe3bf47ff653260/scipy-1.4.1.tar.gz (24.6MB)
|
||
100% |████████████████████████████████| 24.6MB 17kB/s
|
||
Installing build dependencies ... done
|
||
Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from morphocut) (1.16.2)
|
||
Collecting pandas (from morphocut)
|
||
Downloading https://www.piwheels.org/simple/pandas/pandas-0.25.3-cp37-cp37m-linux_armv7l.whl (33.1MB)
|
||
100% |████████████████████████████████| 33.1MB 12kB/s
|
||
Collecting PyWavelets>=0.4.0 (from scikit-image>=0.16.0->morphocut)
|
||
Downloading https://www.piwheels.org/simple/pywavelets/PyWavelets-1.1.1-cp37-cp37m-linux_armv7l.whl (6.1MB)
|
||
100% |████████████████████████████████| 6.1MB 67kB/s
|
||
Collecting networkx>=2.0 (from scikit-image>=0.16.0->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/41/8f/dd6a8e85946def36e4f2c69c84219af0fa5e832b018c970e92f2ad337e45/networkx-2.4-py3-none-any.whl (1.6MB)
|
||
100% |████████████████████████████████| 1.6MB 255kB/s
|
||
Requirement already satisfied: pillow>=4.3.0 in /usr/lib/python3/dist-packages (from scikit-image>=0.16.0->morphocut) (5.4.1)
|
||
Collecting imageio>=2.3.0 (from scikit-image>=0.16.0->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/1a/de/f7f985018f462ceeffada7f6e609919fbcc934acd9301929cba14bc2c24a/imageio-2.6.1-py3-none-any.whl (3.3MB)
|
||
100% |████████████████████████████████| 3.3MB 123kB/s
|
||
Collecting python-dateutil>=2.6.1 (from pandas->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/d4/70/d60450c3dd48ef87586924207ae8907090de0b306af2bce5d134d78615cb/python_dateutil-2.8.1-py2.py3-none-any.whl (227kB)
|
||
100% |████████████████████████████████| 235kB 822kB/s
|
||
Collecting pytz>=2017.2 (from pandas->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/e7/f9/f0b53f88060247251bf481fa6ea62cd0d25bf1b11a87888e53ce5b7c8ad2/pytz-2019.3-py2.py3-none-any.whl (509kB)
|
||
100% |████████████████████████████████| 512kB 660kB/s
|
||
Collecting decorator>=4.3.0 (from networkx>=2.0->scikit-image>=0.16.0->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/8f/b7/f329cfdc75f3d28d12c65980e4469e2fa373f1953f5df6e370e84ea2e875/decorator-4.4.1-py2.py3-none-any.whl
|
||
Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.6.1->pandas->morphocut) (1.12.0)
|
||
Building wheels for collected packages: scipy
|
||
Running setup.py bdist_wheel for scipy ... error
|
||
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-vrivsnzz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-2w9xwni0 --python-tag cp37:
|
||
Traceback (most recent call last):
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/core/__init__.py", line 16, in <module>
|
||
from . import multiarray
|
||
ImportError: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
During handling of the above exception, another exception occurred:
|
||
|
||
Traceback (most recent call last):
|
||
File "<string>", line 1, in <module>
|
||
File "/tmp/pip-install-vrivsnzz/scipy/setup.py", line 540, in <module>
|
||
setup_package()
|
||
File "/tmp/pip-install-vrivsnzz/scipy/setup.py", line 516, in setup_package
|
||
from numpy.distutils.core import setup
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/__init__.py", line 142, in <module>
|
||
from . import add_newdocs
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
|
||
from numpy.lib import add_newdoc
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
|
||
from .type_check import *
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
|
||
import numpy.core.numeric as _nx
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/core/__init__.py", line 26, in <module>
|
||
raise ImportError(msg)
|
||
ImportError:
|
||
Importing the multiarray numpy extension module failed. Most
|
||
likely you are trying to import a failed build of numpy.
|
||
If you're working with a numpy git repo, try `git clean -xdf` (removes all
|
||
files not under version control). Otherwise reinstall numpy.
|
||
|
||
Original error was: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
|
||
----------------------------------------
|
||
Failed building wheel for scipy
|
||
Running setup.py clean for scipy
|
||
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-vrivsnzz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
|
||
|
||
`setup.py clean` is not supported, use one of the following instead:
|
||
|
||
- `git clean -xdf` (cleans all files)
|
||
- `git clean -Xdf` (cleans all versioned files, doesn't touch
|
||
files that aren't checked into the git repo)
|
||
|
||
Add `--force` to your command to use it anyway if you must (unsupported).
|
||
|
||
|
||
----------------------------------------
|
||
Failed cleaning build dir for scipy
|
||
Failed to build scipy
|
||
Installing collected packages: PyWavelets, decorator, networkx, imageio, scikit-image, tqdm, scipy, python-dateutil, pytz, pandas, morphocut
|
||
Running setup.py install for scipy ... error
|
||
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-vrivsnzz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-s4uxcq_l/install-record.txt --single-version-externally-managed --compile --user --prefix=:
|
||
|
||
Note: if you need reliable uninstall behavior, then install
|
||
with pip instead of using `setup.py install`:
|
||
|
||
- `pip install .` (from a git repo or downloaded source
|
||
release)
|
||
- `pip install scipy` (last SciPy release on PyPI)
|
||
|
||
|
||
Traceback (most recent call last):
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/core/__init__.py", line 16, in <module>
|
||
from . import multiarray
|
||
ImportError: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
During handling of the above exception, another exception occurred:
|
||
|
||
Traceback (most recent call last):
|
||
File "<string>", line 1, in <module>
|
||
File "/tmp/pip-install-vrivsnzz/scipy/setup.py", line 540, in <module>
|
||
setup_package()
|
||
File "/tmp/pip-install-vrivsnzz/scipy/setup.py", line 516, in setup_package
|
||
from numpy.distutils.core import setup
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/__init__.py", line 142, in <module>
|
||
from . import add_newdocs
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
|
||
from numpy.lib import add_newdoc
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
|
||
from .type_check import *
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
|
||
import numpy.core.numeric as _nx
|
||
File "/tmp/pip-build-env-3v411zsn/lib/python3.7/site-packages/numpy/core/__init__.py", line 26, in <module>
|
||
raise ImportError(msg)
|
||
ImportError:
|
||
Importing the multiarray numpy extension module failed. Most
|
||
likely you are trying to import a failed build of numpy.
|
||
If you're working with a numpy git repo, try `git clean -xdf` (removes all
|
||
files not under version control). Otherwise reinstall numpy.
|
||
|
||
Original error was: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
|
||
----------------------------------------
|
||
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-vrivsnzz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-s4uxcq_l/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-install-vrivsnzz/scipy/
|
||
|
||
#########################################################
|
||
Installation of MorphoCut packaged on PyPI via pip3 using sudo
|
||
#########################################################
|
||
|
||
$ sudo pip3 install morphocut
|
||
Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
|
||
Collecting morphocut
|
||
Downloading https://files.pythonhosted.org/packages/7e/c7/1addaf867234dd30db6d1f4bf8d3b685d93b743023a863814451abd5cef8/morphocut-0.1.1-py3-none-any.whl
|
||
Collecting scikit-image>=0.16.0 (from morphocut)
|
||
Downloading https://www.piwheels.org/simple/scikit-image/scikit_image-0.16.2-cp37-cp37m-linux_armv7l.whl (39.7MB)
|
||
100% |████████████████████████████████| 39.7MB 10kB/s
|
||
Collecting tqdm (from morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/72/c9/7fc20feac72e79032a7c8138fd0d395dc6d8812b5b9edf53c3afd0b31017/tqdm-4.41.1-py2.py3-none-any.whl (56kB)
|
||
100% |████████████████████████████████| 61kB 839kB/s
|
||
Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from morphocut) (1.16.2)
|
||
Collecting pandas (from morphocut)
|
||
Downloading https://www.piwheels.org/simple/pandas/pandas-0.25.3-cp37-cp37m-linux_armv7l.whl (33.1MB)
|
||
100% |████████████████████████████████| 33.1MB 12kB/s
|
||
Collecting scipy (from morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/04/ab/e2eb3e3f90b9363040a3d885ccc5c79fe20c5b8a3caa8fe3bf47ff653260/scipy-1.4.1.tar.gz (24.6MB)
|
||
100% |████████████████████████████████| 24.6MB 17kB/s
|
||
Installing build dependencies ... done
|
||
Requirement already satisfied: pillow>=4.3.0 in /usr/lib/python3/dist-packages (from scikit-image>=0.16.0->morphocut) (5.4.1)
|
||
Collecting PyWavelets>=0.4.0 (from scikit-image>=0.16.0->morphocut)
|
||
Downloading https://www.piwheels.org/simple/pywavelets/PyWavelets-1.1.1-cp37-cp37m-linux_armv7l.whl (6.1MB)
|
||
100% |████████████████████████████████| 6.1MB 51kB/s
|
||
Collecting networkx>=2.0 (from scikit-image>=0.16.0->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/41/8f/dd6a8e85946def36e4f2c69c84219af0fa5e832b018c970e92f2ad337e45/networkx-2.4-py3-none-any.whl (1.6MB)
|
||
100% |████████████████████████████████| 1.6MB 247kB/s
|
||
Collecting imageio>=2.3.0 (from scikit-image>=0.16.0->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/1a/de/f7f985018f462ceeffada7f6e609919fbcc934acd9301929cba14bc2c24a/imageio-2.6.1-py3-none-any.whl (3.3MB)
|
||
100% |████████████████████████████████| 3.3MB 123kB/s
|
||
Collecting pytz>=2017.2 (from pandas->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/e7/f9/f0b53f88060247251bf481fa6ea62cd0d25bf1b11a87888e53ce5b7c8ad2/pytz-2019.3-py2.py3-none-any.whl (509kB)
|
||
100% |████████████████████████████████| 512kB 793kB/s
|
||
Collecting python-dateutil>=2.6.1 (from pandas->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/d4/70/d60450c3dd48ef87586924207ae8907090de0b306af2bce5d134d78615cb/python_dateutil-2.8.1-py2.py3-none-any.whl (227kB)
|
||
100% |████████████████████████████████| 235kB 1.5MB/s
|
||
Collecting decorator>=4.3.0 (from networkx>=2.0->scikit-image>=0.16.0->morphocut)
|
||
Downloading https://files.pythonhosted.org/packages/8f/b7/f329cfdc75f3d28d12c65980e4469e2fa373f1953f5df6e370e84ea2e875/decorator-4.4.1-py2.py3-none-any.whl
|
||
Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.6.1->pandas->morphocut) (1.12.0)
|
||
Building wheels for collected packages: scipy
|
||
Running setup.py bdist_wheel for scipy ... error
|
||
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-ki6gsz87/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-sfawkwpg --python-tag cp37:
|
||
Traceback (most recent call last):
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/core/__init__.py", line 16, in <module>
|
||
from . import multiarray
|
||
ImportError: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
During handling of the above exception, another exception occurred:
|
||
|
||
Traceback (most recent call last):
|
||
File "<string>", line 1, in <module>
|
||
File "/tmp/pip-install-ki6gsz87/scipy/setup.py", line 540, in <module>
|
||
setup_package()
|
||
File "/tmp/pip-install-ki6gsz87/scipy/setup.py", line 516, in setup_package
|
||
from numpy.distutils.core import setup
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/__init__.py", line 142, in <module>
|
||
from . import add_newdocs
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
|
||
from numpy.lib import add_newdoc
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
|
||
from .type_check import *
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
|
||
import numpy.core.numeric as _nx
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/core/__init__.py", line 26, in <module>
|
||
raise ImportError(msg)
|
||
ImportError:
|
||
Importing the multiarray numpy extension module failed. Most
|
||
likely you are trying to import a failed build of numpy.
|
||
If you're working with a numpy git repo, try `git clean -xdf` (removes all
|
||
files not under version control). Otherwise reinstall numpy.
|
||
|
||
Original error was: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
|
||
----------------------------------------
|
||
Failed building wheel for scipy
|
||
Running setup.py clean for scipy
|
||
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-ki6gsz87/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
|
||
|
||
`setup.py clean` is not supported, use one of the following instead:
|
||
|
||
- `git clean -xdf` (cleans all files)
|
||
- `git clean -Xdf` (cleans all versioned files, doesn't touch
|
||
files that aren't checked into the git repo)
|
||
|
||
Add `--force` to your command to use it anyway if you must (unsupported).
|
||
|
||
|
||
----------------------------------------
|
||
Failed cleaning build dir for scipy
|
||
Failed to build scipy
|
||
Installing collected packages: PyWavelets, decorator, networkx, imageio, scikit-image, tqdm, pytz, python-dateutil, pandas, scipy, morphocut
|
||
Running setup.py install for scipy ... error
|
||
Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-ki6gsz87/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-hdghzezx/install-record.txt --single-version-externally-managed --compile:
|
||
|
||
Note: if you need reliable uninstall behavior, then install
|
||
with pip instead of using `setup.py install`:
|
||
|
||
- `pip install .` (from a git repo or downloaded source
|
||
release)
|
||
- `pip install scipy` (last SciPy release on PyPI)
|
||
|
||
|
||
Traceback (most recent call last):
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/core/__init__.py", line 16, in <module>
|
||
from . import multiarray
|
||
ImportError: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
During handling of the above exception, another exception occurred:
|
||
|
||
Traceback (most recent call last):
|
||
File "<string>", line 1, in <module>
|
||
File "/tmp/pip-install-ki6gsz87/scipy/setup.py", line 540, in <module>
|
||
setup_package()
|
||
File "/tmp/pip-install-ki6gsz87/scipy/setup.py", line 516, in setup_package
|
||
from numpy.distutils.core import setup
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/__init__.py", line 142, in <module>
|
||
from . import add_newdocs
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
|
||
from numpy.lib import add_newdoc
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
|
||
from .type_check import *
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
|
||
import numpy.core.numeric as _nx
|
||
File "/tmp/pip-build-env-p6ljhcs4/lib/python3.7/site-packages/numpy/core/__init__.py", line 26, in <module>
|
||
raise ImportError(msg)
|
||
ImportError:
|
||
Importing the multiarray numpy extension module failed. Most
|
||
likely you are trying to import a failed build of numpy.
|
||
If you're working with a numpy git repo, try `git clean -xdf` (removes all
|
||
files not under version control). Otherwise reinstall numpy.
|
||
|
||
Original error was: libf77blas.so.3: cannot open shared object file: No such file or directory
|
||
|
||
|
||
----------------------------------------
|
||
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-ki6gsz87/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-hdghzezx/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-ki6gsz87/scipy/
|
||
|
||
#########################################################
|
||
Installation of Scipy using sudo apt-get
|
||
#########################################################
|
||
|
||
$ sudo apt-get install python3-scipy
|
||
Lecture des listes de paquets... Fait
|
||
Construction de l'arbre des dépendances
|
||
Lecture des informations d'état... Fait
|
||
Les paquets supplémentaires suivants seront installés :
|
||
python3-decorator
|
||
Paquets suggérés :
|
||
python-scipy-doc
|
||
Les NOUVEAUX paquets suivants seront installés :
|
||
python3-decorator python3-scipy
|
||
0 mis à jour, 2 nouvellement installés, 0 à enlever et 41 non mis à jour.
|
||
Il est nécessaire de prendre 8 925 ko dans les archives.
|
||
Après cette opération, 38,0 Mo d'espace disque supplémentaires seront utilisés.
|
||
Souhaitez-vous continuer ? [O/n] o
|
||
Réception de :1 http://ftp.igh.cnrs.fr/pub/os/linux/raspbian/raspbian buster/main armhf python3-decorator all 4.3.0-1.1 [14,5 kB]
|
||
Réception de :2 http://ftp.igh.cnrs.fr/pub/os/linux/raspbian/raspbian buster/main armhf python3-scipy armhf 1.1.0-7 [8 910 kB]
|
||
8 925 ko réceptionnés en 3s (2 561 ko/s)
|
||
Sélection du paquet python3-decorator précédemment désélectionné.
|
||
(Lecture de la base de données... 99960 fichiers et répertoires déjà installés.)
|
||
Préparation du dépaquetage de .../python3-decorator_4.3.0-1.1_all.deb ...
|
||
Dépaquetage de python3-decorator (4.3.0-1.1) ...
|
||
Sélection du paquet python3-scipy précédemment désélectionné.
|
||
Préparation du dépaquetage de .../python3-scipy_1.1.0-7_armhf.deb ...
|
||
Dépaquetage de python3-scipy (1.1.0-7) ...
|
||
Paramétrage de python3-decorator (4.3.0-1.1) ...
|
||
Paramétrage de python3-scipy (1.1.0-7) ...
|
||
|
||
#########################################################
|
||
Installation of MorphoCut packaged on PyPI via pip3 using sudo
|
||
#########################################################
|
||
|
||
$ sudo pip3 install morphocut
|
||
Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
|
||
Collecting morphocut
|
||
Using cached https://files.pythonhosted.org/packages/7e/c7/1addaf867234dd30db6d1f4bf8d3b685d93b743023a863814451abd5cef8/morphocut-0.1.1-py3-none-any.whl
|
||
Requirement already satisfied: scikit-image>=0.16.0 in /usr/local/lib/python3.7/dist-packages (from morphocut) (0.16.2)
|
||
Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from morphocut) (1.16.2)
|
||
Requirement already satisfied: tqdm in /usr/local/lib/python3.7/dist-packages (from morphocut) (4.41.1)
|
||
Requirement already satisfied: pandas in /usr/local/lib/python3.7/dist-packages (from morphocut) (0.25.3)
|
||
Requirement already satisfied: scipy in /usr/lib/python3/dist-packages (from morphocut) (1.1.0)
|
||
Requirement already satisfied: imageio>=2.3.0 in /usr/local/lib/python3.7/dist-packages (from scikit-image>=0.16.0->morphocut) (2.6.1)
|
||
Requirement already satisfied: PyWavelets>=0.4.0 in /usr/local/lib/python3.7/dist-packages (from scikit-image>=0.16.0->morphocut) (1.1.1)
|
||
Requirement already satisfied: networkx>=2.0 in /usr/local/lib/python3.7/dist-packages (from scikit-image>=0.16.0->morphocut) (2.4)
|
||
Requirement already satisfied: pillow>=4.3.0 in /usr/lib/python3/dist-packages (from scikit-image>=0.16.0->morphocut) (5.4.1)
|
||
Requirement already satisfied: python-dateutil>=2.6.1 in /usr/local/lib/python3.7/dist-packages (from pandas->morphocut) (2.8.1)
|
||
Requirement already satisfied: pytz>=2017.2 in /usr/local/lib/python3.7/dist-packages (from pandas->morphocut) (2019.3)
|
||
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.7/dist-packages (from networkx>=2.0->scikit-image>=0.16.0->morphocut) (4.4.1)
|
||
Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.6.1->pandas->morphocut) (1.12.0)
|
||
Installing collected packages: morphocut
|
||
Successfully installed morphocut-0.1.1
|
||
|