2 lines
27 KiB
JSON
2 lines
27 KiB
JSON
[{"id":"7f885510.6173fc","type":"tab","label":"Flow 1","disabled":false,"info":""},{"id":"955fdac.f54f328","type":"ui_text_input","z":"7f885510.6173fc","name":"sample_ship","label":"Name of the ship (ex : Tara)","tooltip":"","group":"c627ea8d.f886e8","order":2,"width":0,"height":0,"passthru":true,"mode":"text","delay":300,"topic":"sample_ship","x":150,"y":140,"wires":[["5e6e3b80.1068d4"]]},{"id":"dfb29406.d68148","type":"ui_dropdown","z":"7f885510.6173fc","name":"sample_sampling_gear","label":"Sampling gear","tooltip":"","place":"Select","group":"c627ea8d.f886e8","order":5,"width":0,"height":0,"passthru":true,"options":[{"label":"Plankton net","value":"net","type":"str"},{"label":"Niskin bottle 12L","value":"niskin_12L","type":"str"},{"label":"Niskin bottle 24L","value":"niskin_24L","type":"str"}],"payload":"","topic":"sample_sampling_gear","x":190,"y":260,"wires":[["5e6e3b80.1068d4"]]},{"id":"bfce92c6.5f66a","type":"ui_text_input","z":"7f885510.6173fc","name":"sample_operator","label":"Name of the operator","tooltip":"","group":"c627ea8d.f886e8","order":4,"width":0,"height":0,"passthru":true,"mode":"text","delay":300,"topic":"sample_operator","x":170,"y":220,"wires":[["5e6e3b80.1068d4"]]},{"id":"bae9c122.3612f","type":"ui_text_input","z":"7f885510.6173fc","name":"sample_project","label":"Name of the project (ex : Tara_Pacific)","tooltip":"","group":"c627ea8d.f886e8","order":1,"width":0,"height":0,"passthru":true,"mode":"text","delay":300,"topic":"sample_project","x":160,"y":100,"wires":[["5e6e3b80.1068d4","2d01ecd6.b00d34","501e654e.6ca29c"]]},{"id":"ff33630c.78f63","type":"ui_date_picker","z":"7f885510.6173fc","name":"object_date","label":"Sample date","group":"106f0e1b.6478a2","order":1,"width":0,"height":0,"passthru":true,"topic":"","x":1210,"y":400,"wires":[["5e6e3b80.1068d4"]]},{"id":"8b800fdc.e83a8","type":"ui_text_input","z":"7f885510.6173fc","name":"object_time","label":"Sampling time","tooltip":"","group":"106f0e1b.6478a2","order":2,"width":0,"height":0,"passthru":true,"mode":"time","delay":300,"topic":"","x":1210,"y":440,"wires":[["5e6e3b80.1068d4"]]},{"id":"eb39c21c.a3fec","type":"ui_text_input","z":"7f885510.6173fc","name":"object_lat","label":"Lattitude (decimal degrees)","tooltip":"","group":"106f0e1b.6478a2","order":3,"width":0,"height":0,"passthru":true,"mode":"number","delay":300,"topic":"","x":1200,"y":480,"wires":[["5e6e3b80.1068d4"]]},{"id":"404b41a5.ae3d5","type":"ui_text_input","z":"7f885510.6173fc","name":"object_lon","label":"Longitude (decimal degrees)","tooltip":"","group":"106f0e1b.6478a2","order":4,"width":0,"height":0,"passthru":true,"mode":"text","delay":300,"topic":"","x":1210,"y":520,"wires":[["5e6e3b80.1068d4"]]},{"id":"d90c72f2.cf1ca","type":"ui_text_input","z":"7f885510.6173fc","name":"sample_id","label":"Name of the station (ex: OA125)","tooltip":"","group":"c627ea8d.f886e8","order":3,"width":0,"height":0,"passthru":true,"mode":"text","delay":300,"topic":"sample_id","x":150,"y":180,"wires":[["5e6e3b80.1068d4","2d01ecd6.b00d34","501e654e.6ca29c"]]},{"id":"3300f426.cc515c","type":"ui_dropdown","z":"7f885510.6173fc","name":"acq_fnumber_objective","label":"f-number M12","tooltip":"","place":"Select option","group":"832434ce.ebe498","order":1,"width":0,"height":0,"passthru":true,"options":[{"label":"f 25mm 1/2\" 5MP IR","value":25,"type":"num"},{"label":"f 16mm 1/2.5\" 5MP IR","value":16,"type":"num"},{"label":"f 12mm 1/2.5\" 5MP IR","value":12,"type":"num"},{"label":"f 8mm 1/2.5\" 5MP IR","value":8,"type":"num"},{"label":"f 6mm 1/2.5\" 5MP IR","value":6,"type":"num"}],"payload":"","topic":"","x":1250,"y":100,"wires":[["de455648.b432f8","2d01ecd6.b00d34","ecc11aa4.57cb98","de6fdfb0.ec1ca"]]},{"id":"72d57e31.59234","type":"ui_template","z":"7f885510.6173fc","group":"832434ce.ebe498","name":"Magnification","order":2,"width":0,"height":0,"format":"<div>\n Magnification : X\n <span id=\"obj_magnification\" ng-bind-html=\"msg.payload\">\n </span>\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":1790,"y":100,"wires":[["5e6e3b80.1068d4"]]},{"id":"98a4bc0a.f3304","type":"ui_template","z":"7f885510.6173fc","group":"77a6994b.e3efb8","name":"Instrument","order":1,"width":0,"height":0,"format":"<div>\n Instrument :\n <span id=\"acq_instrument\">\n PlanktonScope V2.1\n </span>\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":150,"y":540,"wires":[[]]},{"id":"53b3cb43.2acf04","type":"ui_template","z":"7f885510.6173fc","group":"77a6994b.e3efb8","name":"Software","order":2,"width":0,"height":0,"format":"<div>\n Software :\n <span id=\"acq_software\">\n Node-RED Dashboard\n </span>\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":140,"y":580,"wires":[[]]},{"id":"1a0a45f1.2cd7da","type":"ui_template","z":"7f885510.6173fc","group":"77a6994b.e3efb8","name":"Camera","order":3,"width":0,"height":0,"format":"<div>\n Camera :\n <span id=\"acq_camera_name\">\n Pi Camera v2.1\n </span>\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":140,"y":620,"wires":[[]]},{"id":"de455648.b432f8","type":"function","z":"7f885510.6173fc","name":"calculate","func":"var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n magnification = String(' 0.6');\n process_pixel = String(' 1.86');\n sug_min = String(' 60');\n sug_max = String(' 670');\n flowrate = String(' 3');\n duration = String(' 3');\n break;\n case \"16\":\n magnification = String(' 0.94');\n process_pixel = String(' 1.19');\n sug_min = String(' 40');\n sug_max = String(' 430');\n flowrate = String(' 2.4');\n duration = String(' 3');\n break;\n case \"12\":\n magnification = String(' 1.20');\n process_pixel = String(' 0.94');\n sug_min = String(' 30');\n sug_max = String(' 340');\n flowrate = String(' 1.25');\n duration = String(' 3');\n break;\n case \"8\":\n magnification = String(' 1.78');\n process_pixel = String(' 0.63');\n sug_min = String(' 20');\n sug_max = String(' 230');\n flowrate = String(' 0.42');\n duration = String(' 3');\n break;\n case \"6\":\n magnification = String(' 2.36');\n process_pixel = String(' 0.48');\n sug_min = String(' 15');\n sug_max = String(' 170');\n flowrate = String(' 0.32');\n duration = String(' 3');\n break;\n}\n\nmsg.payload = magnification.concat(process_pixel, sug_min, sug_max,flowrate,duration);\nreturn msg;","outputs":1,"noerr":0,"x":1440,"y":100,"wires":[["bf51ed75.15f7f","1c966729.d952b9","e7ef7709.ba3f88","1ae4f566.e9182b","578b63e7.8a675c"]]},{"id":"f3aa18d.65f0de8","type":"ui_dropdown","z":"7f885510.6173fc","name":"acq_celltype","label":"Thickness flowcell","tooltip":"","place":"Select option","group":"a72a9ec6.bb144","order":1,"width":0,"height":0,"passthru":true,"options":[{"label":"200 μm µ-Slide I Luer","value":200,"type":"num"},{"label":"400 μm µ-Slide I Luer","value":400,"type":"num"},{"label":"600 μm µ-Slide I Luer","value":600,"type":"num"},{"label":"800 μm µ-Slide I Luer","value":800,"type":"num"}],"payload":"","topic":"acq_celltype","x":150,"y":340,"wires":[["5e6e3b80.1068d4"]]},{"id":"45568fe8.67759","type":"ui_numeric","z":"7f885510.6173fc","name":"acq_minimum_mesh","label":"Min fraction size (μm)","tooltip":"","group":"a72a9ec6.bb144","order":3,"width":0,"height":0,"wrap":false,"passthru":true,"topic":"acq_minimum_mesh","format":"{{value}}","min":0,"max":"300","step":"10","x":180,"y":420,"wires":[["5e6e3b80.1068d4"]]},{"id":"918b69e2.7e6e88","type":"ui_numeric","z":"7f885510.6173fc","name":"acq_maximum_mesh","label":"Max fraction size (μm)","tooltip":"","group":"a72a9ec6.bb144","order":4,"width":0,"height":0,"wrap":false,"passthru":true,"topic":"acq_maximum_mesh","format":"{{value}}","min":"200","max":"2000","step":"100","x":180,"y":460,"wires":[["5e6e3b80.1068d4"]]},{"id":"86d762dc.47911","type":"ui_switch","z":"7f885510.6173fc","name":"light_state","label":"Light","tooltip":"","group":"c62ffbd3.787ef8","order":2,"width":2,"height":1,"passthru":true,"decouple":"false","topic":"","style":"","onvalue":"true","onvalueType":"bool","onicon":"","oncolor":"","offvalue":"false","offvalueType":"bool","officon":"","offcolor":"","x":630,"y":480,"wires":[["b5a366b4.cb6918"]]},{"id":"b5a366b4.cb6918","type":"exec","z":"7f885510.6173fc","command":"python3.7 $HOME/PlanktonScope/scripts/light.py","addpay":true,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"light.py","x":960,"y":480,"wires":[[],[],[]]},{"id":"5ea28a70.42ae14","type":"ui_button","z":"7f885510.6173fc","name":"up","group":"c62ffbd3.787ef8","order":4,"width":1,"height":1,"passthru":false,"label":"","tooltip":"","color":"","bgcolor":"","icon":"arrow_upwards","payload":"up","payloadType":"str","topic":"up","x":650,"y":580,"wires":[["523fdeaa.50c6c"]]},{"id":"27f16831.dde938","type":"ui_button","z":"7f885510.6173fc","name":"down","group":"c62ffbd3.787ef8","order":6,"width":1,"height":1,"passthru":true,"label":"","tooltip":"","color":"","bgcolor":"","icon":"arrow_downward","payload":"down","payloadType":"str","topic":"down","x":650,"y":660,"wires":[["523fdeaa.50c6c"]]},{"id":"855e9d96.ab869","type":"ui_text_input","z":"7f885510.6173fc","name":"nb_step","label":"Number of step","tooltip":"","group":"c62ffbd3.787ef8","order":5,"width":3,"height":1,"passthru":false,"mode":"number","delay":300,"topic":"nb_step","x":640,"y":620,"wires":[["523fdeaa.50c6c"]]},{"id":"b110542b.5de4f8","type":"ui_button","z":"7f885510.6173fc","name":"kill_focus","group":"c62ffbd3.787ef8","order":7,"width":3,"height":1,"passthru":false,"label":"Cancel focus","tooltip":"","color":"#AD1625","bgcolor":"#333333","icon":"pause","payload":"","payloadType":"str","topic":"","x":640,"y":720,"wires":[["d9dea2bc.47097"]]},{"id":"523fdeaa.50c6c","type":"function","z":"7f885510.6173fc","name":"focus","func":"var lastinput = context.get(\"lastinput\") || \"\";\n\nif(msg.topic === \"nb_step\"){\n lastinput = msg.payload;\n context.set(\"lastinput\",lastinput);\n}\nif(msg.topic === \"up\"){\n\n nb_step = String(lastinput);\n\n orientation = \"up\";\n\n msg.payload = nb_step.concat(' ', orientation);\n return msg;\n}\nif(msg.topic === \"down\"){\n \n nb_step = String(lastinput);\n\n orientation = \"down\";\n msg.payload = nb_step.concat(' ', orientation);\n\n return msg;\n}\n\n","outputs":1,"noerr":0,"x":810,"y":620,"wires":[["ada728bd.8e7818"]],"info":"### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"},{"id":"ada728bd.8e7818","type":"exec","z":"7f885510.6173fc","command":"python3.7 $HOME/PlanktonScope/scripts/focus.py","addpay":true,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"Focus.py","x":960,"y":620,"wires":[[],[],[]]},{"id":"d9dea2bc.47097","type":"exec","z":"7f885510.6173fc","command":"bash $HOME/PlanktonScope/scripts/killer.sh focus.py && bash $HOME/PlanktonScope/scripts/killer.sh focus.py","addpay":false,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"Kill Focus","x":960,"y":720,"wires":[[],[],[]],"icon":"font-awesome/fa-stop"},{"id":"6bf10b4c.c83c84","type":"ui_button","z":"7f885510.6173fc","name":"start","group":"c62ffbd3.787ef8","order":9,"width":6,"height":1,"passthru":false,"label":"Start Acquisition","tooltip":"","color":"","bgcolor":"","icon":"play_circle_fill","payload":"","payloadType":"str","topic":"start","x":650,"y":960,"wires":[["2d01ecd6.b00d34","de6fdfb0.ec1ca"]]},{"id":"2c9498e7.bf0c38","type":"ui_button","z":"7f885510.6173fc","name":"stop","group":"c62ffbd3.787ef8","order":10,"width":6,"height":1,"passthru":false,"label":"Cancel Acquisition","tooltip":"","color":"#AD1625","bgcolor":"#333333","icon":"pause_circle_filled","payload":"","payloadType":"str","topic":"stop","x":650,"y":1000,"wires":[["501e654e.6ca29c","35dca58e.6f1dda"]]},{"id":"5e6e3b80.1068d4","type":"function","z":"7f885510.6173fc","d":true,"name":"Store","func":"var lastinput = context.get(\"lastinput\") || \"\";\n\nif(msg.topic === \"acq_fluid_volume_imaged\"){\n lastinput = msg.payload;\n context.set(\"acq_fluid_volume_imaged\",acq_fluid_volume_imaged);\n}\n\nif(msg.topic === \"sample_project\"){\n lastinput = msg.payload;\n context.set(\"sample_project\",sample_project);\n}\n\nif(msg.topic === \"sample_id\"){\n lastinput = msg.payload;\n context.set(\"sample_id\",sample_id);\n}\n\n\nmsg.payload = nb_step.concat(' ', orientation);\nreturn msg;\n\n\n","outputs":1,"noerr":0,"x":2230,"y":400,"wires":[[]]},{"id":"2d0f6720.0f92f8","type":"ui_template","z":"7f885510.6173fc","group":"832434ce.ebe498","name":"Pi Camera settings","order":7,"width":0,"height":0,"format":"<button class=\"md-raised md-button md-ink-ripple\" type=\"button\" onclick=\"window.location.href = 'http://127.0.0.1/html/';\">Pi Camera settings</button>\n","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":1230,"y":320,"wires":[[]]},{"id":"bf51ed75.15f7f","type":"function","z":"7f885510.6173fc","name":"get magnification","func":"var array = String(msg.payload);\n\nvar items = array.split(' ');\n\nmsg.payload = items[1];\n\nreturn msg;","outputs":1,"noerr":0,"x":1610,"y":100,"wires":[["72d57e31.59234"]]},{"id":"9599b953.529c28","type":"ui_template","z":"7f885510.6173fc","group":"832434ce.ebe498","name":"process_pixel","order":3,"width":0,"height":0,"format":"<div>\n Pixel resolution :\n <span id=\"process_pixel\" ng-bind-html=\"msg.payload\"></span>\n μm\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":1800,"y":140,"wires":[["5e6e3b80.1068d4"]]},{"id":"1c966729.d952b9","type":"function","z":"7f885510.6173fc","name":"get process_pixel","func":"var array = String(msg.payload);\n\nvar items = array.split(' ');\n\nmsg.payload = items[2];\n\nreturn msg;","outputs":1,"noerr":0,"x":1610,"y":140,"wires":[["9599b953.529c28"]]},{"id":"612e2b9b.ed1684","type":"ui_template","z":"7f885510.6173fc","group":"832434ce.ebe498","name":"min_size","order":4,"width":0,"height":0,"format":"<div>\n Smallest cells to explore :\n <span id=\"min_size\" ng-bind-html=\"msg.payload\"></span>\n μm\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":1780,"y":180,"wires":[[]]},{"id":"e7ef7709.ba3f88","type":"function","z":"7f885510.6173fc","name":"get min size","func":"var array = String(msg.payload);\n\nvar items = array.split(' ');\n\nmsg.payload = items[3];\n\nreturn msg;","outputs":1,"noerr":0,"x":1590,"y":180,"wires":[["612e2b9b.ed1684"]]},{"id":"f84ab57a.556df8","type":"ui_template","z":"7f885510.6173fc","group":"832434ce.ebe498","name":"max_size","order":5,"width":0,"height":0,"format":"<div>\n Biggest cells to explore :\n <span id=\"max_size\" ng-bind-html=\"msg.payload\"></span>\n μm\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":1780,"y":220,"wires":[["5e6e3b80.1068d4"]]},{"id":"1ae4f566.e9182b","type":"function","z":"7f885510.6173fc","name":"get max size","func":"var array = String(msg.payload);\n\nvar items = array.split(' ');\n\nmsg.payload = items[4];\n\nreturn msg;","outputs":1,"noerr":0,"x":1590,"y":220,"wires":[["f84ab57a.556df8"]]},{"id":"45f53656.d631e8","type":"ui_template","z":"7f885510.6173fc","group":"832434ce.ebe498","name":"flowrate","order":6,"width":0,"height":0,"format":"<div>\n Flowrate :\n <span id=\"max_size\" ng-bind-html=\"msg.payload\"></span>\n ml/min\n</div>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":1780,"y":260,"wires":[[]]},{"id":"578b63e7.8a675c","type":"function","z":"7f885510.6173fc","name":"get flowrate","func":"var array = String(msg.payload);\n\nvar items = array.split(' ');\n\nmsg.payload = items[5];\nreturn msg;","outputs":1,"noerr":0,"x":1590,"y":260,"wires":[["45f53656.d631e8"]]},{"id":"53ec5f97.7567c","type":"ui_template","z":"7f885510.6173fc","group":"c62ffbd3.787ef8","name":"Stream Pi Camera","order":1,"width":0,"height":0,"format":"<center><iframe id=\"inlineFrameExample\"\n title=\"Inline Frame Example\"\n height=\"384\"\n width=\"512\"\n frameborder=\"0\"\n src=\"http://127.0.0.1/html/min.php\">\n</iframe></center>","storeOutMessages":true,"fwdInMessages":true,"templateScope":"local","x":790,"y":100,"wires":[[]]},{"id":"2d01ecd6.b00d34","type":"function","z":"7f885510.6173fc","name":"Image","func":"var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\nvar acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"start\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id, flowrate].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}","outputs":1,"noerr":0,"x":810,"y":880,"wires":[["ac43bec2.d6696","fd5146e4.600cc8"]],"info":"### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "},{"id":"c84f1718.4af6b8","type":"ui_switch","z":"7f885510.6173fc","name":"fan_state","label":"Fan","tooltip":"","group":"c62ffbd3.787ef8","order":3,"width":2,"height":1,"passthru":true,"decouple":"false","topic":"","style":"","onvalue":"true","onvalueType":"bool","onicon":"","oncolor":"","offvalue":"false","offvalueType":"bool","officon":"","offcolor":"","x":640,"y":540,"wires":[["dec2b84a.6faa18"]]},{"id":"dec2b84a.6faa18","type":"exec","z":"7f885510.6173fc","command":"python3.7 $HOME/PlanktonScope/scripts/fan.py","addpay":true,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"fan.py","x":950,"y":540,"wires":[[],[],[]]},{"id":"7923e634.673cd8","type":"ui_text_input","z":"7f885510.6173fc","name":"in_path","label":"Directory (ex : /home/pi/Desktop/)","tooltip":"","group":"c62ffbd3.787ef8","order":8,"width":"12","height":"1","passthru":true,"mode":"text","delay":300,"topic":"in_path","x":640,"y":880,"wires":[["2d01ecd6.b00d34","501e654e.6ca29c"]]},{"id":"477dc1bd.c3de8","type":"ui_text_input","z":"7f885510.6173fc","name":"acq_id","label":"Acquisition ID (ex : experience_1)","tooltip":"","group":"c62ffbd3.787ef8","order":8,"width":"12","height":"1","passthru":true,"mode":"text","delay":300,"topic":"acq_id","x":650,"y":920,"wires":[["2d01ecd6.b00d34","501e654e.6ca29c"]]},{"id":"1cdfba79.2455b6","type":"exec","z":"7f885510.6173fc","command":"python3.7 $HOME/PlanktonScope/scripts/image.py","addpay":true,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"image.py","x":1120,"y":800,"wires":[["54727b23.4a9c34"],["54727b23.4a9c34"],["54727b23.4a9c34"]],"icon":"node-red/arrow-in.svg"},{"id":"9ccdfc61.c73a5","type":"exec","z":"7f885510.6173fc","command":"bash $HOME/RPi_Cam_Web_Interface/stop.sh","addpay":false,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"Kill RPi Web Interface","x":1160,"y":880,"wires":[["54727b23.4a9c34"],["54727b23.4a9c34"],["54727b23.4a9c34"]]},{"id":"ac43bec2.d6696","type":"delay","z":"7f885510.6173fc","name":"","pauseType":"delay","timeout":"5","timeoutUnits":"seconds","rate":"1","nbRateUnits":"1","rateUnits":"second","randomFirst":"1","randomLast":"5","randomUnits":"seconds","drop":false,"x":960,"y":820,"wires":[["1cdfba79.2455b6"]]},{"id":"12df6d06.bfe9a3","type":"exec","z":"7f885510.6173fc","command":"bash $HOME/RPi_Cam_Web_Interface/start.sh","addpay":true,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"Restart RPi Web Interface","x":1170,"y":960,"wires":[["54727b23.4a9c34"],["54727b23.4a9c34"],["54727b23.4a9c34"]]},{"id":"fd5146e4.600cc8","type":"delay","z":"7f885510.6173fc","name":"","pauseType":"delay","timeout":"2","timeoutUnits":"seconds","rate":"1","nbRateUnits":"1","rateUnits":"second","randomFirst":"1","randomLast":"5","randomUnits":"seconds","drop":false,"x":960,"y":880,"wires":[["9ccdfc61.c73a5"]]},{"id":"ecc11aa4.57cb98","type":"function","z":"7f885510.6173fc","name":"wait","func":"var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n duration = String('500');\n break;\n case \"16\":\n duration = String('620');\n break;\n case \"12\":\n duration = String('1170');\n break;\n case \"8\":\n duration = String('3450');\n break;\n case \"6\":\n duration = String('4520');\n break;\n}\n\nmsg.payload = duration;\nreturn msg;","outputs":1,"noerr":0,"x":970,"y":940,"wires":[["12df6d06.bfe9a3"]]},{"id":"54727b23.4a9c34","type":"debug","z":"7f885510.6173fc","name":"","active":true,"tosidebar":true,"console":false,"tostatus":false,"complete":"false","x":1430,"y":900,"wires":[]},{"id":"615a8890.e9eee8","type":"exec","z":"7f885510.6173fc","command":"bash $HOME/PlanktonScope/scripts/kill_image.sh","addpay":true,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"Kill Image","x":1120,"y":1020,"wires":[["54727b23.4a9c34"],["54727b23.4a9c34"],["54727b23.4a9c34"]]},{"id":"501e654e.6ca29c","type":"function","z":"7f885510.6173fc","name":"Image","func":"var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"stop\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}","outputs":1,"noerr":0,"x":970,"y":1020,"wires":[["615a8890.e9eee8"]],"info":"### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "},{"id":"519b5726.b7c038","type":"exec","z":"7f885510.6173fc","command":"python3.7 $HOME/PlanktonScope/scripts/pump.py","addpay":true,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"pump.py","x":1120,"y":740,"wires":[["54727b23.4a9c34"],["54727b23.4a9c34"],["54727b23.4a9c34"]]},{"id":"de6fdfb0.ec1ca","type":"function","z":"7f885510.6173fc","name":"Image","func":"var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nif(msg.topic === \"start\"){\n \n msg.payload = [\"24\", flowrate, \"foward\"].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}","outputs":1,"noerr":0,"x":830,"y":780,"wires":[["519b5726.b7c038"]],"info":"### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "},{"id":"35dca58e.6f1dda","type":"exec","z":"7f885510.6173fc","command":"bash $HOME/PlanktonScope/scripts/killer.sh pump.py && bash $HOME/PlanktonScope/scripts/killer.sh pump.py","addpay":false,"append":"","useSpawn":"false","timer":"","oldrc":false,"name":"Kill Pump","x":1120,"y":1080,"wires":[[],[],[]]},{"id":"c627ea8d.f886e8","type":"ui_group","z":"","name":"General","tab":"6b01f851.598028","order":1,"disp":true,"width":6,"collapse":false},{"id":"106f0e1b.6478a2","type":"ui_group","z":"","name":"Spatio Temporal","tab":"6b01f851.598028","order":5,"disp":true,"width":"6","collapse":false},{"id":"832434ce.ebe498","type":"ui_group","z":"","name":"Optic Settings","tab":"6b01f851.598028","order":3,"disp":true,"width":"6","collapse":false},{"id":"77a6994b.e3efb8","type":"ui_group","z":"","name":"General","tab":"6b01f851.598028","order":6,"disp":true,"width":6,"collapse":false},{"id":"a72a9ec6.bb144","type":"ui_group","z":"","name":"Fluidic settings","tab":"6b01f851.598028","order":4,"disp":true,"width":"6","collapse":false},{"id":"c62ffbd3.787ef8","type":"ui_group","z":"","name":"Preview","tab":"6b01f851.598028","order":2,"disp":true,"width":12,"collapse":false},{"id":"6b01f851.598028","type":"ui_tab","z":"","name":"PlanktonScope GUI v2.1","icon":"date_range","order":1,"disabled":false,"hidden":false}]
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