curious.bio/planktoscope
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planktoscope/flows/main.json

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{
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"z": "baa1e3d9.cb29d",
"name": "Image control",
"func": "// Reset the number of images taken\nglobal.set('img_counter', 0);\n\nvar acq_celltype = global.get(\"acq_celltype\");\nvar acq_minimum_mesh = global.get(\"acq_minimum_mesh\");\nvar acq_maximum_mesh = global.get(\"acq_maximum_mesh\");\nvar imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar acq_id = global.get(\"acq_id\");\nvar nb_frame = global.get(\"nb_frame\");\nvar pump_direction = global.get(\"pump_direction\");\nvar sleep_before = global.get(\"sleep_before\");\n\nif (acq_celltype === undefined || acq_celltype === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Type of the flowcell\";\n return [null, msg];\n} else if (acq_minimum_mesh === undefined || acq_minimum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Lower fraction size\";\n return [null, msg];\n} else if (acq_maximum_mesh === undefined || acq_maximum_mesh === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Upper fraction size\";\n return [null, msg];\n} else if (imaging_pump_volume === undefined || imaging_pump_volume === \"\" || imaging_pump_volume === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Volume inbetween images\";\n return [null, msg];\n} else if (acq_id === undefined || acq_id === \"\") {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Acquisition ID\";\n return [null, msg];\n} else if (nb_frame === undefined || nb_frame === \"\" || nb_frame === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Number of image to save\";\n return [null, msg];\n} else if (pump_direction === undefined || pump_direction === \"\" || pump_direction === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Pump direction\";\n return [null, msg];\n} else if (sleep_before === undefined || sleep_before === \"\" || pump_direction === null) {\n msg.topic = \"Missing entry :\";\n msg.payload = \"Delay before image\";\n return [null, msg];\n}\nmsg.payload = {\n \"action\": \"image\",\n \"sleep\": sleep_before,\n \"pump_direction\": pump_direction,\n \"volume\": imaging_pump_volume,\n \"nb_frame\": nb_frame,\n}\n\nreturn [msg, null];",
"outputs": 2,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 640,
"y": 500,
"wires": [
[
"52ea7d01.711034",
"40c12463.a1f84c",
"a4abb1ae.2ae418"
],
[
"20e0a8c8.edbeb"
]
],
"info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
},
{
"id": "20e0a8c8.edbeb",
"type": "ui_toast",
"z": "baa1e3d9.cb29d",
"position": "dialog",
"displayTime": "3",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "",
"x": 890,
"y": 580,
"wires": [
[]
]
},
{
"id": "c3e50240.82aa58",
"type": "mqtt out",
"z": "baa1e3d9.cb29d",
"name": "",
"topic": "",
"qos": "",
"retain": "",
"broker": "8dc3722c.06efa8",
"x": 1130,
"y": 460,
"wires": []
},
{
"id": "3a4450b1.4459a8",
"type": "ui_button",
"z": "baa1e3d9.cb29d",
"name": "Stop Acquisition",
"group": "4322c187.e73e5",
"order": 11,
"width": 5,
"height": 1,
"passthru": true,
"label": "STOP ACQUISITION",
"tooltip": "",
"color": "",
"bgcolor": "#AD1625",
"icon": "cancel",
"payload": "{\"action\":\"stop\"}",
"payloadType": "json",
"topic": "imager/image",
"x": 420,
"y": 540,
"wires": [
[
"d74210ef.edc15"
]
]
},
{
"id": "d74210ef.edc15",
"type": "mqtt out",
"z": "baa1e3d9.cb29d",
"name": "",
"topic": "",
"qos": "",
"retain": "",
"broker": "8dc3722c.06efa8",
"x": 610,
"y": 540,
"wires": []
},
{
"id": "bb62da8a.ebc328",
"type": "ui_switch",
"z": "baa1e3d9.cb29d",
"name": "Pump direction",
"label": "Pump direction",
"tooltip": "BACKWARD / FORWARD",
"group": "4322c187.e73e5",
"order": 9,
"width": 5,
"height": 1,
"passthru": true,
"decouple": "false",
"topic": "pump_direction",
"style": "",
"onvalue": "FORWARD",
"onvalueType": "str",
"onicon": "",
"oncolor": "",
"offvalue": "BACKWARD",
"offvalueType": "str",
"officon": "",
"offcolor": "",
"x": 420,
"y": 580,
"wires": [
[
"6b2239f3.41fa3"
]
]
},
{
"id": "52ea7d01.711034",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "Encapsulate config",
"func": "msg.payload = {\n\t\"action\": \"update_config\",\n\t\"config\": {\n \t\"description\": {\n \t\t\"sample_project\": \"Project's name\",\n \t\t\"sample_id\": \"Sample ID\",\n \t\t\"sample_uuid\": \"Sample UUID (Autogenerated)\",\n \t\t\"sample_ship\": \"Ship's name\",\n \t\t\"sample_operator\": \"Operator's name\",\n \t\t\"sample_sampling_gear\": \"Sampling gear used\",\n \t\t\"sample_concentrated_sample_volume\": \"Volume of concentrated sample, in mL\",\n \t\t\"sample_total_volume\": \"Total volume filtered by the net used, in L\",\n \t\t\"acq_id\": \"Acquisition ID\",\n \t\t\"acq_uuid\": \"Acquisition UUID (Autogenerated)\",\n \t\t\"acq_instrument\": \"Instrument type\",\n \t\t\"acq_instrument_id\": \"Instrument ID\",\n \t\t\"acq_celltype\": \"Flow cell dimension thickness, in µm\",\n \t\t\"acq_minimum_mesh\": \"Minimum filtration mesh size, in µm\",\n \t\t\"acq_maximum_mesh\": \"Maximum filtration mesh size, in µm\",\n \t\t\"acq_min_esd\": \"\",\n \t\t\"acq_max_esd\": \"\",\n \t\t\"acq_volume\": \"Imaged volume, in mL\",\n \t\t\"acq_magnification\": \"Optical magnification\",\n \t\t\"acq_fnumber_objective\": \"Focal length of the objective, in mm\",\n \t\t\"acq_camera_name\": \"Name of the camera used\",\n \t\t\"acq_nb_frame\": \"Number of picture taken\",\n \"acq_local_datetime\": \"Instrument local datetime\",\n \"acq_camera_resolution\": \"Resolution of the images\",\n \"acq_camera_iso\": \"ISO Number of the images\",\n \"acq_camera_shutter_speed\": \"Shutter speed of the images, in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\n\t\t\"acq_id\": global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_magnification\": global.get(\"magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_id\": global.get(\"process_id\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n\t\n\tif (msg.payload.config.sample_sampling_gear == \"net_decknet\") {\n \tmsg.payload.config[\"sample_total_volume\"] = global.get(\"sample_total_volume\")\n }\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 870,
"y": 460,
"wires": [
[
"c3e50240.82aa58",
"29be525e.0c87fe"
]
]
},
{
"id": "40c12463.a1f84c",
"type": "delay",
"z": "baa1e3d9.cb29d",
"name": "",
"pauseType": "delay",
"timeout": "1",
"timeoutUnits": "seconds",
"rate": "1",
"nbRateUnits": "1",
"rateUnits": "second",
"randomFirst": "1",
"randomLast": "5",
"randomUnits": "seconds",
"drop": false,
"x": 900,
"y": 500,
"wires": [
[
"c3e50240.82aa58"
]
]
},
{
"id": "4d1b02cb.83b51c",
"type": "ui_button",
"z": "baa1e3d9.cb29d",
"name": "",
"group": "4322c187.e73e5",
"order": 10,
"width": 5,
"height": 1,
"passthru": false,
"label": "Update config",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "save",
"payload": "",
"payloadType": "str",
"topic": "imager/image",
"x": 420,
"y": 460,
"wires": [
[
"52ea7d01.711034"
]
]
},
{
"id": "452af41c.43940c",
"type": "python3-function",
"z": "1371dec5.76e671",
"name": "Get MachineName",
"func": "import sys\nsys.path.append('/home/pi/PlanktonScope/scripts')\nimport planktoscope.uuidName\n\nmsg['payload'] = planktoscope.uuidName.machineName(machine=planktoscope.uuidName.getSerial())\nmsg['topic'] = \"acq_instrument_id\";\nreturn msg",
"outputs": 1,
"x": 350,
"y": 620,
"wires": [
[
"4828d2f4.7c712c",
"a400a97e.e333a8"
]
]
},
{
"id": "4828d2f4.7c712c",
"type": "function",
"z": "1371dec5.76e671",
"name": "set global",
"func": "global.set(msg.topic,msg.payload);\n",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 580,
"y": 640,
"wires": [
[]
]
},
{
"id": "d027a6bf.7049e8",
"type": "function",
"z": "b771c342.49603",
"name": "get sample_projet",
"func": "msg.payload = msg.payload.sample_project;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 310,
"y": 40,
"wires": [
[
"9c882b37.fde668"
]
]
},
{
"id": "5a811caf.0f3144",
"type": "function",
"z": "b771c342.49603",
"name": "get sample_ship",
"func": "msg.payload = msg.payload.sample_ship;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 310,
"y": 80,
"wires": [
[
"4557d689.a4fa88"
]
]
},
{
"id": "45911c98.2bd83c",
"type": "function",
"z": "b771c342.49603",
"name": "get sample_id",
"func": "msg.payload = msg.payload.sample_id;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 300,
"y": 120,
"wires": [
[
"94eb4221.9b92c"
]
]
},
{
"id": "1e09a4ab.72996b",
"type": "function",
"z": "b771c342.49603",
"name": "get sample_operator",
"func": "msg.payload = msg.payload.sample_operator;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 320,
"y": 160,
"wires": [
[
"82c5fc77.59c97"
]
]
},
{
"id": "a3272681.f271c8",
"type": "function",
"z": "b771c342.49603",
"name": "get sample_sampling_gear",
"func": "if (msg.payload.sample_sampling_gear === null){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 340,
"y": 200,
"wires": [
[
"fcfc31ae.af3af"
]
]
},
{
"id": "6465bdd5.15eb8c",
"type": "file in",
"z": "1c24ad9c.bebec2",
"name": "",
"filename": "/home/pi/PlanktonScope/config.json",
"format": "utf8",
"chunk": false,
"sendError": false,
"encoding": "none",
"x": 470,
"y": 60,
"wires": [
[
"15ceb135.6628bf"
]
],
"info": "# PlanktonScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n"
},
{
"id": "15ceb135.6628bf",
"type": "json",
"z": "1c24ad9c.bebec2",
"name": "config.json",
"property": "payload",
"action": "",
"pretty": false,
"x": 730,
"y": 60,
"wires": [
[
"ad541674.4791c8"
]
]
},
{
"id": "7205d267.36adcc",
"type": "file",
"z": "1c24ad9c.bebec2",
"name": "",
"filename": "/home/pi/PlanktonScope/config.json",
"appendNewline": true,
"createDir": true,
"overwriteFile": "true",
"encoding": "none",
"x": 990,
"y": 160,
"wires": [
[]
]
},
{
"id": "2e6ddf51.c0dba",
"type": "json",
"z": "1c24ad9c.bebec2",
"name": "config.json",
"property": "payload",
"action": "str",
"pretty": true,
"x": 730,
"y": 160,
"wires": [
[
"7205d267.36adcc"
]
]
},
{
"id": "ad541674.4791c8",
"type": "function",
"z": "1c24ad9c.bebec2",
"name": "Global Set",
"func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 910,
"y": 60,
"wires": [
[]
]
},
{
"id": "3e9a33c.141384c",
"type": "inject",
"z": "1c24ad9c.bebec2",
"name": "Load config",
"props": [
{
"p": "topic",
"vt": "str"
}
],
"repeat": "",
"crontab": "",
"once": true,
"onceDelay": 0.1,
"topic": "",
"x": 210,
"y": 60,
"wires": [
[
"6465bdd5.15eb8c"
]
]
},
{
"id": "e2f39a35.f57298",
"type": "subflow:1c24ad9c.bebec2",
"z": "1371dec5.76e671",
"name": "",
"env": [],
"x": 570,
"y": 560,
"wires": [
[
"bdc6718a.dd5d48"
]
]
},
{
"id": "a6907a38.f6611",
"type": "subflow:1c24ad9c.bebec2",
"z": "b771c342.49603",
"name": "",
"env": [],
"x": 70,
"y": 120,
"wires": [
[
"d027a6bf.7049e8",
"5a811caf.0f3144",
"45911c98.2bd83c",
"1e09a4ab.72996b",
"296c73f.78ff10c",
"f408a273.4fb538",
"8dff1648.82e42",
"9f04c5ec.75f3d8"
]
]
},
{
"id": "e2b277c1.07283",
"type": "subflow:1c24ad9c.bebec2",
"z": "b771c342.49603",
"name": "",
"env": [],
"x": 690,
"y": 760,
"wires": [
[]
]
},
{
"id": "b3c21aa9.8c06c",
"type": "exec",
"z": "1371dec5.76e671",
"command": "git --git-dir /home/pi/PlanktonScope/.git/ rev-parse --short master",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "git rev",
"x": 310,
"y": 540,
"wires": [
[
"3e64877a.9684b"
],
[],
[]
]
},
{
"id": "3e64877a.9684b",
"type": "function",
"z": "1371dec5.76e671",
"name": "store version",
"func": "msg.payload = \"PlanktoScope v2.2-\"+msg.payload.trim()\n\nglobal.set(\"acq_software\",msg.payload);\n\nreturn msg\n",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 590,
"y": 520,
"wires": [
[
"8343fa69.49339"
]
]
},
{
"id": "68fa1227.dbdd5c",
"type": "function",
"z": "bccd1f23.87219",
"name": "get acq_fnumber_objective",
"func": "msg.payload = msg.payload.acq_fnumber_objective;\n\nglobal.set(\"acq_fnumber_objective\",msg.payload);\n\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 920,
"y": 80,
"wires": [
[
"cc966678.da8d08"
]
]
},
{
"id": "1c45ea1c.80234e",
"type": "subflow:1c24ad9c.bebec2",
"z": "bccd1f23.87219",
"name": "",
"x": 710,
"y": 80,
"wires": [
[
"68fa1227.dbdd5c"
]
]
},
{
"id": "5921d0d0.a3d568",
"type": "subflow:1c24ad9c.bebec2",
"z": "baa1e3d9.cb29d",
"name": "",
"env": [],
"x": 90,
"y": 180,
"wires": [
[
"f3658d30.b8448",
"d3ca8847.4d1ae",
"5e3dec55.881074",
"de2c90cf.b73b08"
]
]
},
{
"id": "f3658d30.b8448",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "get acq_id",
"func": "msg.payload = msg.payload.acq_id;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 310,
"y": 240,
"wires": [
[
"6b34c456.83178c"
]
]
},
{
"id": "de2c90cf.b73b08",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "get acq_celltype",
"func": "msg.payload = msg.payload.acq_celltype;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"x": 320,
"y": 200,
"wires": [
[
"cc0ca68b.4263a8"
]
]
},
{
"id": "5e3dec55.881074",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "get acq_minimum_mesh",
"func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"x": 350,
"y": 120,
"wires": [
[
"f59a2f0d.5e9af"
]
]
},
{
"id": "d3ca8847.4d1ae",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "get acq_maximum_mesh",
"func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;",
"outputs": 1,
"noerr": 0,
"x": 350,
"y": 160,
"wires": [
[
"6008a8bb.259f08"
]
]
},
{
"id": "bdc6718a.dd5d48",
"type": "ui_text",
"z": "1371dec5.76e671",
"group": "ce9e278.781eed8",
"order": 2,
"width": 0,
"height": 0,
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"label": "Total imaged volume",
"format": "{{msg.payload}}",
"layout": "col-center",
"x": 1180,
"y": 240,
"wires": []
},
{
"id": "99b11fe4.2795d",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "imaged volume calc",
"func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (4.15*3.14*cell/1000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (2.31*1.74*cell/1000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 940,
"y": 240,
"wires": [
[
"9bd72495.a8a098"
]
],
"info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
},
{
"id": "8e16aa2f.e40398",
"type": "ui_text",
"z": "baa1e3d9.cb29d",
"group": "4322c187.e73e5",
"order": 7,
"width": 5,
"height": 1,
"name": "Total pumped volume",
"label": "Total pumped volume",
"format": "{{msg.payload}} mL",
"layout": "col-center",
"x": 1180,
"y": 300,
"wires": []
},
{
"id": "67091ac0.8f9f6c",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "acq_volume calc",
"func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 930,
"y": 300,
"wires": [
[
"8e16aa2f.e40398"
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],
"info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
},
{
"id": "43737d43.eb0e9c",
"type": "ui_slider",
"z": "bccd1f23.87219",
"name": "WB Red slider",
"label": "WB: Red",
"tooltip": "from 1.0 to 8.0",
"group": "8c38a81e.9897a8",
"order": 4,
"width": 8,
"height": 1,
"passthru": true,
"outs": "end",
"topic": "wb_red_gain",
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"max": "8.0",
"step": "0.01",
"x": 500,
"y": 880,
"wires": [
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"type": "function",
"z": "bccd1f23.87219",
"name": "Encapsulate settings",
"func": "if (msg.topic == \"wb_red_gain\"){\n msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"white_balance_gain\":{\n \"red\":Math.round(msg.payload*100)\n }\n }\n }\n}\nif (msg.topic == \"wb_blue_gain\"){\n msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"white_balance_gain\":{\n \"blue\":Math.round(msg.payload*100)\n }\n }\n }\n}\nmsg.topic = \"imager/image\"\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 740,
"y": 880,
"wires": [
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"id": "7b699798.3d568",
"type": "ui_slider",
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"name": "WB Blue slider",
"label": "WB: Blue",
"tooltip": "from 1.0 to 8.0",
"group": "8c38a81e.9897a8",
"order": 5,
"width": 8,
"height": 1,
"passthru": true,
"outs": "end",
"topic": "wb_blue_gain",
"min": "1.0",
"max": "8.0",
"step": "0.01",
"x": 500,
"y": 920,
"wires": [
[
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},
{
"id": "daedda1b.9805b8",
"type": "function",
"z": "bccd1f23.87219",
"name": "Encapsulate settings",
"func": "msg.payload = {\n \"action\":\"settings\", \n \"settings\":{\"white_balance\":msg.payload}\n}\nmsg.topic = \"imager/image\"\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 740,
"y": 960,
"wires": [
[
"845e06e1.0d812"
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]
},
{
"id": "82722a3c.846b3",
"type": "inject",
"z": "bccd1f23.87219",
"name": "Default: OFF",
"props": [
{
"p": "payload"
}
],
"repeat": "",
"crontab": "",
"once": true,
"onceDelay": "1",
"topic": "",
"payload": "false",
"payloadType": "bool",
"x": 110,
"y": 960,
"wires": [
[
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]
},
{
"id": "60e44330.50bdec",
"type": "ui_switch",
"z": "bccd1f23.87219",
"name": "AWB",
"label": "Auto White Balance",
"tooltip": "",
"group": "8c38a81e.9897a8",
"order": 3,
"width": 2,
"height": 2,
"passthru": true,
"decouple": "false",
"topic": "imager/image",
"style": "",
"onvalue": "auto",
"onvalueType": "str",
"onicon": "",
"oncolor": "",
"offvalue": "off",
"offvalueType": "str",
"officon": "",
"offcolor": "",
"x": 510,
"y": 960,
"wires": [
[
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},
{
"id": "2b9d6988.d84836",
"type": "switch",
"z": "baa1e3d9.cb29d",
"name": "",
"property": "payload",
"propertyType": "msg",
"rules": [
{
"t": "hask",
"v": "status",
"vt": "str"
},
{
"t": "hask",
"v": "camera_name",
"vt": "str"
}
],
"checkall": "true",
"repair": false,
"outputs": 2,
"x": 650,
"y": 800,
"wires": [
[
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],
[
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]
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{
"id": "3bbb756a.84190a",
"type": "function",
"z": "baa1e3d9.cb29d",
"name": "set camera name",
"func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 810,
"y": 820,
"wires": [
[
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{
"id": "559a8085.1d6b9",
"type": "link out",
"z": "baa1e3d9.cb29d",
"name": "Camera Name",
"links": [
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"572a6daa.6004c4",
"cfc783d7.d6ceb"
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"x": 965,
"y": 820,
"wires": []
},
{
"id": "30067f35.532f2",
"type": "link in",
"z": "1371dec5.76e671",
"name": "Camera Name",
"links": [
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],
"x": 875,
"y": 620,
"wires": [
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},
{
"id": "11b51f8f.acd308",
"type": "python3-function",
"z": "1371dec5.76e671",
"d": true,
"name": "fan temperature",
"func": "import smbus\nbus = smbus.SMBus(1)\n\naddr = 0x0d\nfan_reg = 0x08\n\ntemp = float( msg[\"payload\"])\n\n# 0x01 full speed, 0x02: 20% speed, ..., 0x09: 90% speed\n\nif temp < 38:\n bus.write_byte_data(addr, fan_reg, 0x00)\nelif temp < 43:\n bus.write_byte_data(addr, fan_reg, 0x02)\nelif temp < 46:\n bus.write_byte_data(addr, fan_reg, 0x04)\nelif temp < 48:\n bus.write_byte_data(addr, fan_reg, 0x06)\nelif temp < 52:\n bus.write_byte_data(addr, fan_reg, 0x08)\nelse:\n bus.write_byte_data(addr, fan_reg, 0x01)\n\nreturn msg",
"outputs": 1,
"x": 1520,
"y": 40,
"wires": [
[]
]
},
{
"id": "cbb123ab.fd3428",
"type": "ui_ui_control",
"z": "b771c342.49603",
"name": "",
"events": "change",
"x": 1280,
"y": 260,
"wires": [
[]
]
},
{
"id": "c8749cbb.55254",
"type": "function",
"z": "cb95299c.2817c8",
"name": "set global",
"func": "global.set(msg.topic, msg.payload);",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 560,
"y": 200,
"wires": [
[]
]
},
{
"id": "d43c3ed9.e6cb1",
"type": "ui_template",
"z": "cb95299c.2817c8",
"group": "46be9c86.dea684",
"name": "Object counts",
"order": 2,
"width": 0,
"height": 0,
"format": "<div><center><h2>Object counts</h2></center></div>",
"storeOutMessages": true,
"fwdInMessages": true,
"resendOnRefresh": true,
"templateScope": "local",
"x": 1340,
"y": 760,
"wires": [
[]
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},
{
"id": "857e90c1.cd25b",
"type": "ui_template",
"z": "cb95299c.2817c8",
"group": "46be9c86.dea684",
"name": "Area chart",
"order": 8,
"width": 0,
"height": 0,
"format": "<div><center><h2>Area chart</h2></center></div>",
"storeOutMessages": true,
"fwdInMessages": true,
"resendOnRefresh": true,
"templateScope": "local",
"x": 1320,
"y": 880,
"wires": [
[]
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},
{
"id": "a8bf2334.279c",
"type": "inject",
"z": "baa1e3d9.cb29d",
"name": "Default: 0.5",
"props": [
{
"p": "payload"
}
],
"repeat": "",
"crontab": "",
"once": true,
"onceDelay": 0.1,
"topic": "",
"payload": "0.5",
"payloadType": "num",
"x": 310,
"y": 80,
"wires": [
[
"49ea1123.ee1768"
]
]
},
{
"id": "49ea1123.ee1768",
"type": "ui_numeric",
"z": "baa1e3d9.cb29d",
"name": "sleep_before",
"label": "Delay to stabilize image (s)",
"tooltip": "Happens before every capture",
"group": "4322c187.e73e5",
"order": 4,
"width": 5,
"height": 1,
"wrap": false,
"passthru": true,
"topic": "sleep_before",
"format": "{{value}}",
"min": "0.1",
"max": "5",
"step": "0.1",
"x": 630,
"y": 80,
"wires": [
[
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]
]
},
{
"id": "2911fbc6.d28c24",
"type": "ui_template",
"z": "c1660bc.e7ff7f8",
"group": "c0ebfc57.42527",
"name": "Image browser",
"order": 1,
"width": 24,
"height": 24,
"format": "<div>\n <center>\n <object data=\"http://planktoscope.local:80/\" width=\"1400px\" height=\"1100px\"></object>\n </center>\n</div>",
"storeOutMessages": true,
"fwdInMessages": true,
"resendOnRefresh": false,
"templateScope": "local",
"x": 440,
"y": 140,
"wires": [
[]
]
},
{
"id": "572a6daa.6004c4",
"type": "link in",
"z": "baa1e3d9.cb29d",
"name": "",
"links": [
"559a8085.1d6b9"
],
"x": 795,
"y": 260,
"wires": [
[
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]
]
},
{
"id": "642ff403.1ed91c",
"type": "ui_text_input",
"z": "b771c342.49603",
"name": "sample_concentrated_sample_volume",
"label": "Concentrated sample volume (mL)",
"tooltip": "Volume extracted from the net (in mL)",
"group": "3e1ba03d.f01d8",
"order": 13,
"width": 5,
"height": 1,
"passthru": true,
"mode": "number",
"delay": "1000",
"topic": "sample_concentrated_sample_volume",
"x": 590,
"y": 360,
"wires": [
[
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]
]
},
{
"id": "e967b844.46aa48",
"type": "ui_text_input",
"z": "b771c342.49603",
"name": "sample_gear_net_opening",
"label": "Net opening dimension (mm)",
"tooltip": "Size of the net mouth opening (in mm)",
"group": "cf5d9f0e.d57e7",
"order": 3,
"width": 10,
"height": 1,
"passthru": true,
"mode": "number",
"delay": "1000",
"topic": "sample_gear_net_opening",
"x": 620,
"y": 320,
"wires": [
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]
]
},
{
"id": "8032ea50.1b57f",
"type": "ui_template",
"z": "baa1e3d9.cb29d",
"group": "b5d61bc7.54fe48",
"name": "progress header",
"order": 1,
"width": 0,
"height": 0,
"format": "<center><h2>Capture progress</h2></center>",
"storeOutMessages": false,
"fwdInMessages": false,
"resendOnRefresh": false,
"templateScope": "local",
"x": 1270,
"y": 940,
"wires": [
[]
]
},
{
"id": "eaf74a43.fa27d",
"type": "switch",
"z": "1371dec5.76e671",
"name": "if disk > 90%",
"property": "payload",
"propertyType": "msg",
"rules": [
{
"t": "gte",
"v": "90",
"vt": "num"
}
],
"checkall": "true",
"repair": false,
"outputs": 1,
"x": 590,
"y": 420,
"wires": [
[
"6d09f428.930bcc"
]
]
},
{
"id": "46d5e78b.15f998",
"type": "ui_toast",
"z": "1371dec5.76e671",
"position": "dialog",
"displayTime": "10",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "",
"x": 1070,
"y": 420,
"wires": [
[]
]
},
{
"id": "24df077a.cb252",
"type": "change",
"z": "1371dec5.76e671",
"name": "full disk msg",
"rules": [
{
"t": "set",
"p": "payload",
"pt": "msg",
"to": "\"Your drive has reached 90% capacity, you should do a backup to an external drive and a purge.\"",
"tot": "str"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 910,
"y": 420,
"wires": [
[
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]
},
{
"id": "df1ea904.cd261",
"type": "ui_slider",
"z": "baa1e3d9.cb29d",
"name": "imaging_pump_volume",
"label": "Pumped volume (mL)",
"tooltip": "inbetween frames",
"group": "4322c187.e73e5",
"order": 3,
"width": 0,
"height": 0,
"passthru": true,
"outs": "end",
"topic": "imaging_pump_volume",
"min": "0.001",
"max": "0.5",
"step": "0.001",
"x": 590,
"y": 320,
"wires": [
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{
"id": "a4abb1ae.2ae418",
"type": "subflow:1c24ad9c.bebec2",
"z": "baa1e3d9.cb29d",
"name": "",
"env": [],
"x": 890,
"y": 540,
"wires": [
[]
]
},
{
"id": "cfc783d7.d6ceb",
"type": "link in",
"z": "bccd1f23.87219",
"name": "Camera Name",
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],
"x": 1035,
"y": 200,
"wires": [
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},
{
"id": "db44a49e.960558",
"type": "ui_dropdown",
"z": "b771c342.49603",
"name": "coordinates_type",
"label": "",
"tooltip": "Format of GPS coordinates",
"place": "",
"group": "3e1ba03d.f01d8",
"order": 8,
"width": 8,
"height": 1,
"passthru": true,
"multiple": false,
"options": [
{
"label": "DD.DDDD° N (45.543° N)",
"value": "dd",
"type": "str"
},
{
"label": "DD°MM.MMMM'N (45°54.534' N)",
"value": "ddm",
"type": "str"
}
],
"payload": "",
"topic": "coordinates_type",
"x": 650,
"y": 440,
"wires": [
[
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},
{
"id": "c0ce5626.b6c5",
"type": "ui_toast",
"z": "b771c342.49603",
"position": "dialog",
"displayTime": "3",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "",
"x": 1070,
"y": 540,
"wires": [
[]
]
},
{
"id": "fc20cd7e.afaab8",
"type": "inject",
"z": "b771c342.49603",
"name": "Default: dd",
"props": [
{
"p": "payload"
},
{
"p": "topic",
"vt": "str"
}
],
"repeat": "",
"crontab": "",
"once": true,
"onceDelay": 0.1,
"topic": "coordinates_type",
"payload": "dd",
"payloadType": "str",
"x": 450,
"y": 440,
"wires": [
[
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},
{
"id": "33c28dc1.238002",
"type": "function",
"z": "cb95299c.2817c8",
"name": "reset obj_counter",
"func": "global.set('obj_counter', 0);\n\nreturn msg;global.set('img_counter', 0);\nglobal.set('obj_counter', 0);\n",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 590,
"y": 300,
"wires": [
[
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]
},
{
"id": "b9bf06d6.26c518",
"type": "exec",
"z": "f21ba04.c26266",
"command": "sudo iwlist wlan0 scan | grep ESSID | sed 's/ESSID://g;s/\"//g;s/^ *//;s/ *$//'",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "scan",
"x": 450,
"y": 80,
"wires": [
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[]
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{
"id": "9642cb31.663b4",
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"z": "f21ba04.c26266",
"name": "parseOptions",
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"outputs": 1,
"noerr": 0,
"x": 640,
"y": 80,
"wires": [
[
"dbc0d44.5361b28"
]
]
},
{
"id": "3db572cd.cf972e",
"type": "inject",
"z": "f21ba04.c26266",
"name": "once",
"props": [
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{
"p": "topic",
"vt": "str"
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"repeat": "",
"crontab": "",
"once": true,
"onceDelay": 0.1,
"topic": "",
"payload": "",
"payloadType": "date",
"x": 270,
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{
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"type": "ui_dropdown",
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"label": "Wifi",
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"place": "Select a WIFI",
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"x": 830,
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"height": 0,
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"label": "Scan",
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"bgcolor": "",
"icon": "fa-wifi fa-2x",
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{
"id": "63b885ac.46f384",
"type": "switch",
"z": "f21ba04.c26266",
"name": "ifWifi",
"property": "name",
"propertyType": "msg",
"rules": [
{
"t": "eq",
"v": "Wifi",
"vt": "str"
}
],
"checkall": "true",
"repair": false,
"outputs": 1,
"x": 271,
"y": 80,
"wires": [
[
"b9bf06d6.26c518",
"4c0400c.69a1e8",
"448b4c37.be50bc"
]
]
},
{
"id": "4c0400c.69a1e8",
"type": "exec",
"z": "f21ba04.c26266",
"command": "ifconfig wlan0",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "getInfo",
"x": 460,
"y": 180,
"wires": [
[
"bcb20e39.00cea8"
],
[],
[]
]
},
{
"id": "bcb20e39.00cea8",
"type": "function",
"z": "f21ba04.c26266",
"name": "parse IP Info",
"func": "if (msg.payload === null){\n var ip = \"\";\n var mask = \"\";\n var broadcast = \"\";\n}\nelse{\n var ip = msg.payload.match(/inet ([0-9\\.]+)/)[1];\n var mask = msg.payload.match(/netmask ([0-9\\.]+)/)[1];\n var broadcast = msg.payload.match(/broadcast ([0-9\\.]+)/)[1];\n}\n\nreturn [{topic: 'ip', payload: ip},{topic: 'mask', payload: mask},{topic: 'broadcast', payload: broadcast}]",
"outputs": 3,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 730,
"y": 180,
"wires": [
[
"d71c8185.800fd"
],
[
"67d052ba.99ff24"
],
[
"dc305a26.b33fc"
]
],
"outputLabels": [
"ip",
"mask",
"broadcast"
]
},
{
"id": "d71c8185.800fd",
"type": "ui_text",
"z": "f21ba04.c26266",
"group": "919923a3.d10868",
"order": 2,
"width": 0,
"height": 0,
"name": "",
"label": "IP",
"format": "{{msg.payload || '---'}}",
"layout": "row-spread",
"x": 990,
"y": 141,
"wires": []
},
{
"id": "67d052ba.99ff24",
"type": "ui_text",
"z": "f21ba04.c26266",
"group": "919923a3.d10868",
"order": 3,
"width": 0,
"height": 0,
"name": "",
"label": "Netmask",
"format": "{{msg.payload || '---'}}",
"layout": "row-spread",
"x": 1000,
"y": 181,
"wires": []
},
{
"id": "dc305a26.b33fc",
"type": "ui_text",
"z": "f21ba04.c26266",
"group": "919923a3.d10868",
"order": 4,
"width": 0,
"height": 0,
"name": "",
"label": "Broadcast",
"format": "{{msg.payload || '---'}}",
"layout": "row-spread",
"x": 1010,
"y": 220,
"wires": []
},
{
"id": "94b2e8fc.aa20e",
"type": "ui_form",
"z": "f21ba04.c26266",
"name": "",
"label": "Update",
"group": "9e409235.73cd7",
"order": 3,
"width": 0,
"height": 0,
"options": [
{
"label": "SSID",
"value": "ssid",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Password",
"value": "password",
"type": "text",
"required": true,
"rows": null
}
],
"formValue": {
"ssid": "",
"password": ""
},
"payload": "",
"submit": "Add the network",
"cancel": "Reset fields",
"topic": "",
"x": 1160,
"y": 80,
"wires": [
[
"d59021e3.1b63e8"
]
]
},
{
"id": "cdfa9013.b91278",
"type": "function",
"z": "f21ba04.c26266",
"name": "insert ssid",
"func": "\nmsg.payload = {ssid: msg.payload}\n\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 990,
"y": 80,
"wires": [
[
"94b2e8fc.aa20e"
]
]
},
{
"id": "448b4c37.be50bc",
"type": "exec",
"z": "f21ba04.c26266",
"command": "iwgetid",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "getCurrentSSID",
"x": 480,
"y": 260,
"wires": [
[
"151819d4.0dbe56"
],
[],
[]
]
},
{
"id": "c8a5ae48.ef1308",
"type": "ui_text",
"z": "f21ba04.c26266",
"group": "919923a3.d10868",
"order": 1,
"width": 0,
"height": 0,
"name": "",
"label": "SSID",
"format": "{{msg.payload || '---'}}",
"layout": "row-spread",
"x": 990,
"y": 260,
"wires": []
},
{
"id": "151819d4.0dbe56",
"type": "function",
"z": "f21ba04.c26266",
"name": "parse SSID",
"func": "if (msg.payload !== null){\n var ssid = msg.payload.match(/ESSID:\"([^\"]+)\"/)[1];\n}\nelse\n{\n var ssid = \"\";\n}\n\n\nnode.send({topic: 'ssid', payload: ssid})\n",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 730,
"y": 260,
"wires": [
[
"c8a5ae48.ef1308"
]
]
},
{
"id": "ff059f3f.9c0f28",
"type": "ui_ui_control",
"z": "f21ba04.c26266",
"name": "onTab",
"events": "all",
"x": 130,
"y": 80,
"wires": [
[
"63b885ac.46f384"
]
]
},
{
"id": "167d7bd0.679ce4",
"type": "function",
"z": "f21ba04.c26266",
"name": "update contry code",
"func": "var template = `sudo sed -i \\\"s/^country.*/country=\"${msg.payload}\"/\\\" /home/pi/wpa_supplicant.conf`\n// sudo tee /etc/wpa_supplicant/wpa_supplicant.conf <<EOF\n//ctrl_interface=DIR=/var/run/wpa_supplicant GROUP=netdev\n//update_config=1\n//country=IT\nmsg.payload = template\n\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 630,
"y": 400,
"wires": [
[
"9d30f7b5.aac88"
]
]
},
{
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"type": "exec",
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"command": "",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "updateConf",
"x": 890,
"y": 400,
"wires": [
[],
[],
[]
]
},
{
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"type": "ui_button",
"z": "f21ba04.c26266",
"name": "",
"group": "9e409235.73cd7",
"order": 7,
"width": 3,
"height": 1,
"passthru": false,
"label": "Change Country Code",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "",
"payload": "country_code",
"payloadType": "flow",
"topic": "",
"x": 400,
"y": 400,
"wires": [
[
"167d7bd0.679ce4"
]
]
},
{
"id": "6d4ce391.04abf4",
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"z": "f21ba04.c26266",
"name": "country_code",
"label": "Country Code",
"tooltip": "ISO/IEC alpha2 country code",
"group": "9e409235.73cd7",
"order": 6,
"width": 3,
"height": 1,
"passthru": true,
"mode": "text",
"delay": "500",
"topic": "country_code",
"x": 420,
"y": 360,
"wires": [
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]
]
},
{
"id": "3f60469d.620aea",
"type": "change",
"z": "f21ba04.c26266",
"name": "",
"rules": [
{
"t": "set",
"p": "country_code",
"pt": "flow",
"to": "payload",
"tot": "msg"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 640,
"y": 360,
"wires": [
[]
]
},
{
"id": "4f02c726.de69b8",
"type": "ui_button",
"z": "9daf9e2b.019fc",
"name": "",
"group": "1be83144.4fe4bf",
"order": 10,
"width": 2,
"height": 1,
"passthru": false,
"label": "Reboot",
"tooltip": "",
"color": "",
"bgcolor": "#AD1625",
"icon": "fa-repeat fa-2x",
"payload": "reboot",
"payloadType": "str",
"topic": "reboot",
"x": 400,
"y": 420,
"wires": [
[
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]
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{
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"z": "9daf9e2b.019fc",
"command": "sudo",
"addpay": true,
"append": "now",
"useSpawn": "false",
"timer": "2",
"oldrc": false,
"name": "cmd",
"x": 870,
"y": 460,
"wires": [
[],
[],
[]
]
},
{
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"type": "ui_button",
"z": "9daf9e2b.019fc",
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"group": "1be83144.4fe4bf",
"order": 8,
"width": 2,
"height": 1,
"passthru": false,
"label": "Shutdown",
"tooltip": "",
"color": "",
"bgcolor": "#AD1625",
"icon": "fa-power-off fa-2x",
"payload": "shutdown",
"payloadType": "str",
"topic": "shutdown",
"x": 390,
"y": 500,
"wires": [
[
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]
]
},
{
"id": "4af9112d.87767",
"type": "python3-function",
"z": "9daf9e2b.019fc",
"name": "action",
"func": "#!/usr/bin/python\nimport smbus\n\nbus = smbus.SMBus(1)\n#turn off LED\nbus.write_byte_data(0x0d, 0x07, 0x00)\n#turn off Fan\nbus.write_byte_data(0x0d, 0x08, 0x00)\n\n#msg[\"payload\"] = str(msg[\"topic\"])+' now'\nreturn msg",
"outputs": 1,
"x": 690,
"y": 460,
"wires": [
[
"611a8b1c.a829b4"
]
]
},
{
"id": "fa914867.0a0658",
"type": "exec",
"z": "9daf9e2b.019fc",
"command": "python3 -u /home/pi/PlanktonScope/scripts/main.py",
"addpay": false,
"append": "",
"useSpawn": "true",
"timer": "",
"oldrc": false,
"name": "",
"x": 1100,
"y": 340,
"wires": [
[],
[
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],
[]
]
},
{
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"type": "delay",
"z": "9daf9e2b.019fc",
"name": "",
"pauseType": "delay",
"timeout": "3",
"timeoutUnits": "seconds",
"rate": "1",
"nbRateUnits": "1",
"rateUnits": "second",
"randomFirst": "1",
"randomLast": "5",
"randomUnits": "seconds",
"drop": false,
"x": 700,
"y": 340,
"wires": [
[
"fa914867.0a0658"
]
]
},
{
"id": "466eb611.4da048",
"type": "ui_button",
"z": "9daf9e2b.019fc",
"name": "Restart Python",
"group": "1be83144.4fe4bf",
"order": 6,
"width": 4,
"height": 1,
"passthru": true,
"label": "Restart Python",
"tooltip": "",
"color": "",
"bgcolor": "#AD1625",
"icon": "fa-refresh fa-2x",
"payload": "",
"payloadType": "str",
"topic": "",
"x": 380,
"y": 340,
"wires": [
[
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"bd5cceef.b17ad",
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{
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"type": "exec",
"z": "9daf9e2b.019fc",
"command": "sudo killall -15 python3",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Python soft kill",
"x": 720,
"y": 400,
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[],
[],
[]
]
},
{
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"command": "sudo killall -15 raspimjpeg",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Raspimjpeg soft kill",
"x": 730,
"y": 280,
"wires": [
[],
[],
[]
]
},
{
"id": "d12008a0.47be4",
"type": "ui_template",
"z": "9daf9e2b.019fc",
"group": "a7d64879.38298",
"name": "Log table",
"order": 1,
"width": 12,
"height": 10,
"format": "<script type=\"text/javascript\">\n function selectElementContents(el) {\n var body = document.body, range, sel;\n if (document.createRange && window.getSelection) {\n range = document.createRange();\n sel = window.getSelection();\n sel.removeAllRanges();\n try {\n range.selectNodeContents(el);\n sel.addRange(range);\n } catch (e) {\n range.selectNode(el);\n sel.addRange(range);\n }\n document.execCommand(\"copy\");\n sel.removeAllRanges();\n\n } else if (body.createTextRange) {\n range = body.createTextRange();\n range.moveToElementText(el);\n range.select();\n range.execCommand(\"Copy\");\n }\n }\n</script>\n\n<md-button onclick=\"selectElementContents( document.getElementById('log_table') );\">\n <i class=\"fa fa-copy fa-1x\"></i> Copy Log\n</md-button>\n\n<table id=\"log_table\" style=\"font-family: mono;font-size: 5px;\">\n <tr ng-repeat=\"row in msg.payload\">\n <td>{{row}}</td>\n </tr>\n</table>\n\n",
"storeOutMessages": false,
"fwdInMessages": false,
"resendOnRefresh": false,
"templateScope": "local",
"x": 1660,
"y": 380,
"wires": [
[]
]
},
{
"id": "8b511c2b.9c24c8",
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"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1480,
"y": 300,
"wires": [
[
"d12008a0.47be4"
]
]
},
{
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"name": "",
"group": "a7d64879.38298",
"order": 2,
"width": 0,
"height": 0,
"passthru": true,
"label": "Clear Log",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "fa-eraser",
"payload": "",
"payloadType": "str",
"topic": "",
"x": 1320,
"y": 460,
"wires": [
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{
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{
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"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1240,
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"wires": [
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{
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"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1480,
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"wires": [
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"d12008a0.47be4"
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}
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{
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"width": 4,
"height": 1,
"passthru": false,
"label": "Home",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "home",
"payload": "{\"tab\":\"Home\"}",
"payloadType": "json",
"topic": "",
"x": 430,
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]
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{
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"events": "change",
"x": 580,
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"wires": [
[]
]
},
{
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"type": "rpi-gpio out",
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"wires": []
},
{
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"out": "out",
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"wires": []
},
{
"id": "50f9b5b.a84bccc",
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{
"p": "payload"
}
],
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"topic": "",
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"x": 150,
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"addpay": true,
"append": "",
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"oldrc": false,
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[],
[]
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{
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"name": "git config",
"field": "payload",
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{
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"addpay": true,
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"oldrc": false,
"name": "git user.email",
"x": 1130,
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[],
[]
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{
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"template": "git config --global --replace-all user.email \"{{payload}}\"",
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"passthru": false,
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"color": "",
"bgcolor": "",
"icon": "mi-system_update",
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{
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"type": "exec",
"z": "9daf9e2b.019fc",
"command": "bash /home/pi/PlanktonScope/scripts/bash/update.sh",
"addpay": false,
"append": "",
"useSpawn": "true",
"timer": "",
"oldrc": false,
"name": "Update",
"x": 700,
"y": 220,
"wires": [
[
"64f61762.68c788",
"8b511c2b.9c24c8"
],
[
"64f61762.68c788",
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],
[]
]
},
{
"id": "8f08c4eb.db74b8",
"type": "ui_template",
"z": "9daf9e2b.019fc",
"group": "1be83144.4fe4bf",
"name": "Update message",
"order": 1,
"width": 12,
"height": 2,
"format": "<div><center>If you want to update to the latest code version of Node-Red and Python, please click here.\nWe are trying to save your configuration changes with git stash and restore them afterwards, but clearly, things may break!\nIf you have made changes to the flow, you will lose them. Please commit those changes from Node-Red interface, from the Project History tab.</center></div>",
"storeOutMessages": true,
"fwdInMessages": true,
"resendOnRefresh": true,
"templateScope": "local",
"x": 390,
"y": 180,
"wires": [
[]
]
},
{
"id": "64f61762.68c788",
"type": "ui_toast",
"z": "9daf9e2b.019fc",
"position": "dialog",
"displayTime": "10",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "Update notif",
"x": 970,
"y": 200,
"wires": [
[]
]
},
{
"id": "d59021e3.1b63e8",
"type": "function",
"z": "f21ba04.c26266",
"name": "add network",
"func": "var data = msg.payload\n\nvar command = `wpa_passphrase \"${data.ssid}\" \"${data.password}\" | sed '/#psk=\".*\"/d' | sudo tee -a /etc/wpa_supplicant/wpa_supplicant.conf > /dev/null`\n \nmsg.payload = command\n\nreturn msg",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1330,
"y": 80,
"wires": [
[
"64a1f2f2.3de8b4"
]
]
},
{
"id": "64a1f2f2.3de8b4",
"type": "exec",
"z": "f21ba04.c26266",
"command": "",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "Save Network",
"x": 1520,
"y": 80,
"wires": [
[
"6868b4c4.65987c"
],
[],
[]
]
},
{
"id": "6868b4c4.65987c",
"type": "exec",
"z": "f21ba04.c26266",
"command": "sudo /usr/bin/autohotspotN >/dev/null",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "reconfigure",
"x": 1710,
"y": 80,
"wires": [
[
"59e24c40.e1a4dc"
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[],
[]
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},
{
"id": "59e24c40.e1a4dc",
"type": "function",
"z": "f21ba04.c26266",
"name": "showMessage",
"func": "\nmsg.payload = msg.payload.trim() === 'OK' ? \"Wifi configuration updated successfully\" : \"Error while updating wifi configuration\"\n\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1440,
"y": 180,
"wires": [
[
"4ecb6be2.ad39f4"
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]
},
{
"id": "4ecb6be2.ad39f4",
"type": "ui_toast",
"z": "f21ba04.c26266",
"position": "dialog",
"displayTime": "3",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "",
"x": 1650,
"y": 180,
"wires": [
[]
]
},
{
"id": "f30bf784.90d58",
"type": "ui_dropdown",
"z": "1371dec5.76e671",
"name": "",
"label": "",
"tooltip": "",
"place": "Choose USB device",
"group": "52d1b77.28369c8",
"order": 2,
"width": 0,
"height": 0,
"passthru": false,
"multiple": false,
"options": [
{
"label": "",
"value": "No Drive Detected",
"type": "str"
}
],
"payload": "",
"topic": "device_path",
"x": 840,
"y": 820,
"wires": [
[
"d1b9fed3.f3ead8"
]
]
},
{
"id": "fe29acc2.c25d18",
"type": "ui_button",
"z": "1371dec5.76e671",
"name": "Detect drive",
"group": "52d1b77.28369c8",
"order": 1,
"width": 0,
"height": 0,
"passthru": false,
"label": "Detect drive",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "fa-usb fa-2x",
"payload": "",
"payloadType": "str",
"topic": "",
"x": 150,
"y": 820,
"wires": [
[
"4c00cd96.6b2f6c"
]
]
},
{
"id": "4c00cd96.6b2f6c",
"type": "exec",
"z": "1371dec5.76e671",
"command": "lsblk --bytes --json --paths --output-all",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "detect drive",
"x": 330,
"y": 820,
"wires": [
[
"2dc1e43d.cd3d64"
],
[],
[]
]
},
{
"id": "2dc1e43d.cd3d64",
"type": "json",
"z": "1371dec5.76e671",
"name": "",
"property": "payload",
"action": "",
"pretty": false,
"x": 490,
"y": 820,
"wires": [
[
"6b730649.09351"
]
]
},
{
"id": "6b730649.09351",
"type": "change",
"z": "1371dec5.76e671",
"name": "",
"rules": [
{
"t": "set",
"p": "options",
"pt": "msg",
"to": "[payload.blockdevices.children[mountpoint=null].name]",
"tot": "jsonata"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 660,
"y": 820,
"wires": [
[
"f30bf784.90d58"
]
]
},
{
"id": "1ece8d8e.1008e2",
"type": "ui_button",
"z": "1371dec5.76e671",
"name": "Backup to USB",
"group": "52d1b77.28369c8",
"order": 3,
"width": 0,
"height": 0,
"passthru": false,
"label": "Backup to USB",
"tooltip": "",
"color": "",
"bgcolor": "",
"icon": "archive",
"payload": "",
"payloadType": "str",
"topic": "",
"x": 160,
"y": 900,
"wires": [
[
"6b2fed77.883c0c"
]
]
},
{
"id": "d1b9fed3.f3ead8",
"type": "function",
"z": "1371dec5.76e671",
"name": "set local",
"func": "flow.set(msg.topic,msg.payload);",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1000,
"y": 820,
"wires": [
[]
]
},
{
"id": "6b2fed77.883c0c",
"type": "function",
"z": "1371dec5.76e671",
"name": "get device_path",
"func": "msg.payload = flow.get(\"device_path\");\nreturn msg",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 360,
"y": 900,
"wires": [
[
"df4d4d6a.24787"
]
]
},
{
"id": "c74fe76.bcba718",
"type": "exec",
"z": "1371dec5.76e671",
"command": "sudo /home/pi/PlanktonScope/scripts/bash/usb_backup.sh",
"addpay": true,
"append": "",
"useSpawn": "true",
"timer": "",
"oldrc": false,
"name": "usb_backup.sh",
"x": 700,
"y": 920,
"wires": [
[
"72f5e8d4.40fcb8"
],
[],
[
"a2c36500.6d376"
]
]
},
{
"id": "df4d4d6a.24787",
"type": "switch",
"z": "1371dec5.76e671",
"name": "",
"property": "payload",
"propertyType": "msg",
"rules": [
{
"t": "eq",
"v": "No Drive Detected",
"vt": "str"
},
{
"t": "else"
}
],
"checkall": "false",
"repair": false,
"outputs": 2,
"x": 530,
"y": 900,
"wires": [
[
"9a577caa.1535a"
],
[
"c74fe76.bcba718"
]
]
},
{
"id": "9a577caa.1535a",
"type": "ui_toast",
"z": "1371dec5.76e671",
"position": "dialog",
"displayTime": "5",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "",
"x": 690,
"y": 880,
"wires": [
[]
]
},
{
"id": "72f5e8d4.40fcb8",
"type": "ui_toast",
"z": "1371dec5.76e671",
"position": "top right",
"displayTime": "5",
"highlight": "",
"sendall": true,
"outputs": 0,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "",
"x": 910,
"y": 900,
"wires": []
},
{
"id": "81a48376.27a66",
"type": "ui_toast",
"z": "1371dec5.76e671",
"position": "dialog",
"displayTime": "5",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "OK",
"cancel": "",
"raw": false,
"topic": "",
"name": "",
"x": 1090,
"y": 960,
"wires": [
[]
]
},
{
"id": "a2c36500.6d376",
"type": "function",
"z": "1371dec5.76e671",
"name": "error message",
"func": "switch (msg.payload.code){\ncase 0:\n msg.payload = \"All files successfully copied, you can remove your usb drive!\";\n break;\ncase 1:\n msg.payload = \"There was an error!\";\n break;\ncase 2:\n msg.payload = \"Error: your device is already mounted\"\n break;\ncase 3:\n msg.payload = \"Error while mounting the device\"\n break;\ncase 4:\n msg.payload = \"Error: some files were corrupted during the copy!\"\n break;\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 900,
"y": 940,
"wires": [
[
"81a48376.27a66"
]
]
},
{
"id": "dde0025c.3df9f",
"type": "ui_button",
"z": "1371dec5.76e671",
"name": "Purge local",
"group": "52d1b77.28369c8",
"order": 4,
"width": 0,
"height": 0,
"passthru": false,
"label": "Purge local data",
"tooltip": "",
"color": "",
"bgcolor": "#AD1625",
"icon": "delete_forever",
"payload": "THIS IS GOING TO WIPE ALL THE LOCAL DATA. MAKE SURE YOU DID A BACKUP TO AN USB DRIVE BEFOREHAND.",
"payloadType": "str",
"topic": "BE EXTRA CAREFUL",
"x": 150,
"y": 980,
"wires": [
[
"ba72704a.8a38a"
]
]
},
{
"id": "ba72704a.8a38a",
"type": "ui_toast",
"z": "1371dec5.76e671",
"position": "dialog",
"displayTime": "5",
"highlight": "",
"sendall": true,
"outputs": 1,
"ok": "GO BACK",
"cancel": "YES I'M SURE, I WANT TO PURGE THE DATA",
"raw": false,
"topic": "Data purge",
"name": "",
"x": 350,
"y": 980,
"wires": [
[
"d80e6307.3aaf8"
]
]
},
{
"id": "d80e6307.3aaf8",
"type": "switch",
"z": "1371dec5.76e671",
"name": "",
"property": "payload",
"propertyType": "msg",
"rules": [
{
"t": "cont",
"v": "YES I'M SURE",
"vt": "str"
}
],
"checkall": "true",
"repair": false,
"outputs": 1,
"x": 530,
"y": 980,
"wires": [
[
"4a8cb5d4.52e4bc"
]
]
},
{
"id": "4a8cb5d4.52e4bc",
"type": "exec",
"z": "1371dec5.76e671",
"command": "rm -r /home/pi/data/img /home/pi/data/objects /home/pi/data/export",
"addpay": false,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "rm data",
"x": 680,
"y": 980,
"wires": [
[],
[],
[
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]
},
{
"id": "2dc762df.08cd7e",
"type": "inject",
"z": "baa1e3d9.cb29d",
"name": "Default: 0.01",
"props": [
{
"p": "payload"
}
],
"repeat": "",
"crontab": "",
"once": true,
"onceDelay": 0.1,
"topic": "",
"payload": "0.05",
"payloadType": "num",
"x": 310,
"y": 320,
"wires": [
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]
]
},
{
"id": "c33f1124.af6688",
"type": "ui_form",
"z": "b771c342.49603",
"name": "sample_location",
"label": "Sample Location",
"group": "cef1e703.bcf3c8",
"order": 1,
"width": 0,
"height": 0,
"options": [
{
"label": "Latitude",
"value": "object_lat",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Longitude",
"value": "object_lon",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Date (YYYY-MM-DD, UTC)",
"value": "object_date",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Time (HH:MM(:SS), UTC 24h)",
"value": "object_time",
"type": "text",
"required": true,
"rows": null
}
],
"formValue": {
"object_lat": "",
"object_lon": "",
"object_date": "",
"object_time": ""
},
"payload": "",
"submit": "Validate",
"cancel": "Reset",
"topic": "sample_location",
"x": 660,
"y": 500,
"wires": [
[
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]
},
{
"id": "358908cd.416ab",
"type": "ui_form",
"z": "b771c342.49603",
"name": "net_throw_location",
"label": "Net Throw Location",
"group": "cf5d9f0e.d57e7",
"order": 1,
"width": 0,
"height": 0,
"options": [
{
"label": "Latitude",
"value": "object_lat",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Longitude",
"value": "object_lon",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Date (YYYY-MM-DD, UTC)",
"value": "object_date",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Time (HH:MM(:SS), UTC 24h)",
"value": "object_time",
"type": "text",
"required": true,
"rows": null
}
],
"formValue": {
"object_lat": "",
"object_lon": "",
"object_date": "",
"object_time": ""
},
"payload": "",
"submit": "Validate",
"cancel": "Reset",
"topic": "net_throw_location",
"x": 650,
"y": 540,
"wires": [
[
"14658615.47c862"
]
]
},
{
"id": "56d40584.eff4e4",
"type": "ui_form",
"z": "b771c342.49603",
"name": "net_retrieval_location",
"label": "Net Retrieval Location",
"group": "cf5d9f0e.d57e7",
"order": 2,
"width": 0,
"height": 0,
"options": [
{
"label": "Latitude",
"value": "object_lat_end",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Longitude",
"value": "object_lon_end",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Date (YYYY-MM-DD, UTC)",
"value": "object_date_end",
"type": "text",
"required": true,
"rows": null
},
{
"label": "Time (HH:MM(:SS), UTC 24h)",
"value": "object_time_end",
"type": "text",
"required": true,
"rows": null
}
],
"formValue": {
"object_lat_end": "",
"object_lon_end": "",
"object_date_end": "",
"object_time_end": ""
},
"payload": "",
"submit": "Validate",
"cancel": "Reset",
"topic": "net_retrieval_location",
"x": 640,
"y": 580,
"wires": [
[
"14658615.47c862"
]
]
},
{
"id": "14658615.47c862",
"type": "function",
"z": "b771c342.49603",
"name": "Validate Form",
"func": "function ConvertDDMMToDD(input) {\n // Input Format 36°57.4439' N, 110°4.2100' W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n var parts = input.split(/[^\\d\\w]+/)\n var dd = Number(parts[0]) + (Number(parts[1]) + Number(parts[2])/10000)/60\n return dd.toFixed(6) + parts[3]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439° N, 110.42100° W\n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n var error = {}\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00 or 12:00:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d(:[0-5]\\d)?/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM(:SS) (:SS is optional)\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n \n if (time.length > 2){\n if (!((0 <= time[2]) && (time[2] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The seconds should be between 01 and 31\"\n return [null, error]\n }\n }\n else {\n input = input + \":00\"\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\n\nif (msg.topic == \"net_retrieval_location\"){\n if (flow.get(\"coordinates_type\") == \"ddm\"){\n msg.payload.object_lat_end = ConvertDDMMToDD(msg.payload.object_lat_end)\n msg.payload.object_lon_end = ConvertDDMMToDD(msg.payload.object_lon_end)\n }\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n if (flow.get(\"coordinates_type\") == \"ddm\"){\n msg.payload.object_lat = ConvertDDMMToDD(msg.payload.object_lat)\n msg.payload.object_lon = ConvertDDMMToDD(msg.payload.object_lon)\n }\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_lat\", ret[0]);\n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_lon\", ret[0])\n \n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return msg\n }\n global.set(\"object_time\", ret[0])\n}\nreturn {topic: \"Coordinates valid!\", payload: \"All good!\"}\n",
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"noerr": 0,
"initialize": "",
"finalize": "",
"x": 880,
"y": 540,
"wires": [
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"c0ce5626.b6c5"
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],
"inputLabels": [
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"outputLabels": [
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},
{
"id": "6d281807.b003a",
"type": "change",
"z": "b771c342.49603",
"name": "",
"rules": [
{
"t": "set",
"p": "coordinates_type",
"pt": "flow",
"to": "payload",
"tot": "msg"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 890,
"y": 440,
"wires": [
[]
]
},
{
"id": "7a40646c.9fa6bc",
"type": "ui_template",
"z": "b771c342.49603",
"group": "3e1ba03d.f01d8",
"name": "Coordinates format header",
"order": 7,
"width": 2,
"height": 1,
"format": "<div>Coordinates format*</div>",
"storeOutMessages": true,
"fwdInMessages": true,
"resendOnRefresh": true,
"templateScope": "local",
"x": 620,
"y": 400,
"wires": [
[]
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},
{
"id": "296c73f.78ff10c",
"type": "delay",
"z": "b771c342.49603",
"name": "",
"pauseType": "delay",
"timeout": "1",
"timeoutUnits": "seconds",
"rate": "1",
"nbRateUnits": "1",
"rateUnits": "second",
"randomFirst": "1",
"randomLast": "2",
"randomUnits": "milliseconds",
"drop": false,
"x": 140,
"y": 200,
"wires": [
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},
{
"id": "46eb1bf8.3dc5f4",
"type": "function",
"z": "b771c342.49603",
"name": "Net check",
"func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\"]}};\n}\nelse{\n activation_msg.payload = {\"group\":{\"hide\":[\"Sample_Net_Metadata\"],\"show\":[\"Sample_Sample_Location\"]}};\n}\n\n\nreturn [decknet, activation_msg];",
"outputs": 2,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1080,
"y": 240,
"wires": [
[
"516375fd.2ed61c",
"470e382a.25691",
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"outputLabels": [
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"group display control"
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},
{
"id": "516375fd.2ed61c",
"type": "ui_text_input",
"z": "b771c342.49603",
"name": "sample_total_volume_start",
"label": "Decknet flowmeter start",
"tooltip": "",
"group": "cf5d9f0e.d57e7",
"order": 5,
"width": 5,
"height": 1,
"passthru": true,
"mode": "text",
"delay": 300,
"topic": "sample_total_volume_start",
"x": 1340,
"y": 180,
"wires": [
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},
{
"id": "470e382a.25691",
"type": "ui_text_input",
"z": "b771c342.49603",
"name": "sample_total_volume_end",
"label": "Decknet flowmeter end",
"tooltip": "",
"group": "cf5d9f0e.d57e7",
"order": 6,
"width": 5,
"height": 1,
"passthru": true,
"mode": "text",
"delay": 300,
"topic": "sample_total_volume_end",
"x": 1340,
"y": 220,
"wires": [
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},
{
"id": "c23967d8.8d088",
"type": "function",
"z": "b771c342.49603",
"name": "Store sample_total_volume",
"func": "if (msg.topic == \"sample_total_volume_start\"){\n context.set(\"sample_total_volume_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_volume_end\"){\n context.set(\"sample_total_volume_end\", msg.payload);\n}\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_volume_end\") - context.get(\"sample_total_volume_start\");\n global.set(\"sample_total_volume\", sample_total_volume);\n}\n\n",
"outputs": 2,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 1640,
"y": 200,
"wires": [
[],
[]
],
"outputLabels": [
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"group display control"
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},
{
"id": "fbe32ac8.ff6a38",
"type": "ui_template",
"z": "b771c342.49603",
"group": "cf5d9f0e.d57e7",
"name": "Decknet flowmeter read",
"order": 4,
"width": 10,
"height": 1,
"format": "<div style=\"line-height: 100%;\">\n <p class=\"formlabel\" style=\"font-size: larger;\">Decknet flowmeter readings</p>\n <p style=\"font-size: smaller;\">Those values are used to calculate <font style=\"font-family: mono;\">sample_total_volume</font>.</p>\n</div>\n",
"storeOutMessages": true,
"fwdInMessages": true,
"resendOnRefresh": true,
"templateScope": "local",
"x": 1330,
"y": 140,
"wires": [
[]
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},
{
"id": "1f63860d.5f5efa",
"type": "file in",
"z": "4ed26b8b.253504",
"name": "",
"filename": "/home/pi/PlanktonScope/hardware.json",
"format": "utf8",
"chunk": false,
"sendError": false,
"encoding": "none",
"x": 380,
"y": 80,
"wires": [
[
"8c1fda48.d7d828"
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],
"info": "# PlanktonScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n"
},
{
"id": "8c1fda48.d7d828",
"type": "json",
"z": "4ed26b8b.253504",
"name": "Parse JSON",
"property": "payload",
"action": "",
"pretty": false,
"x": 650,
"y": 80,
"wires": [
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},
{
"id": "82099021.9ceb08",
"type": "file",
"z": "4ed26b8b.253504",
"name": "",
"filename": "/home/pi/PlanktonScope/hardware.json",
"appendNewline": true,
"createDir": true,
"overwriteFile": "true",
"encoding": "none",
"x": 780,
"y": 200,
"wires": [
[]
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},
{
"id": "bb0a8725.a1849",
"type": "json",
"z": "4ed26b8b.253504",
"name": "Create JSON",
"property": "payload",
"action": "str",
"pretty": true,
"x": 500,
"y": 200,
"wires": [
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},
{
"id": "f748d952.4b6bc8",
"type": "inject",
"z": "4ed26b8b.253504",
"name": "Load config",
"props": [
{
"p": "topic",
"vt": "str"
}
],
"repeat": "",
"crontab": "",
"once": true,
"onceDelay": 0.1,
"topic": "",
"x": 110,
"y": 80,
"wires": [
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"1f63860d.5f5efa"
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},
{
"id": "ddb4b136.fc0b78",
"type": "change",
"z": "4ed26b8b.253504",
"name": "",
"rules": [
{
"t": "set",
"p": "hardware_conf",
"pt": "global",
"to": "payload",
"tot": "msg"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 870,
"y": 80,
"wires": [
[]
]
},
{
"id": "44efaeb3.59bf6",
"type": "subflow:4ed26b8b.253504",
"z": "1eaf21c8.f7a21e",
"name": "",
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"wires": [
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},
{
"id": "e10f5e55.00b828",
"type": "change",
"z": "1eaf21c8.f7a21e",
"name": "Get stepper_type",
"rules": [
{
"t": "set",
"p": "payload",
"pt": "msg",
"to": "payload.stepper_type",
"tot": "msg"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 330,
"y": 140,
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"z": "1eaf21c8.f7a21e",
"name": "stepper_type",
"label": "",
"tooltip": "",
"place": "",
"group": "6be36295.0ab324",
"order": 3,
"width": 3,
"height": 1,
"passthru": false,
"multiple": false,
"options": [
{
"label": "",
"value": "adafruit",
"type": "str"
},
{
"label": "",
"value": "waveshare",
"type": "str"
}
],
"payload": "",
"topic": "stepper_type",
"x": 610,
"y": 140,
"wires": [
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"id": "e41870d7.300eb8",
"type": "link out",
"z": "1eaf21c8.f7a21e",
"name": "Stepper_type change",
"links": [
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"x": 955,
"y": 160,
"wires": []
},
{
"id": "2068e7f.f4efb18",
"type": "delay",
"z": "1eaf21c8.f7a21e",
"name": "",
"pauseType": "delay",
"timeout": "1",
"timeoutUnits": "seconds",
"rate": "1",
"nbRateUnits": "1",
"rateUnits": "second",
"randomFirst": "1",
"randomLast": "5",
"randomUnits": "seconds",
"drop": false,
"x": 820,
"y": 160,
"wires": [
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},
{
"id": "45a7b5aa.2ed20c",
"type": "link in",
"z": "9daf9e2b.019fc",
"name": "Python restart",
"links": [
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"x": 155,
"y": 300,
"wires": [
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},
{
"id": "53d163be.47cf24",
"type": "function",
"z": "4ed26b8b.253504",
"name": "Update and retrieve hardware_conf",
"func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\nif (msg.topic !== null){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 240,
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"wires": [
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]
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{
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{
"t": "set",
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"pt": "msg",
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"tot": "msg"
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],
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"property": "",
"from": "",
"to": "",
"reg": false,
"x": 340,
"y": 180,
"wires": [
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},
{
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"z": "1eaf21c8.f7a21e",
"name": "stepper_reverse",
"label": "Invert stepper output",
"tooltip": "Stepper 1 is controlled by output 1 or the other way around",
"group": "6be36295.0ab324",
"order": 4,
"width": 0,
"height": 0,
"passthru": false,
"decouple": "false",
"topic": "stepper_reverse",
"style": "",
"onvalue": "true",
"onvalueType": "bool",
"onicon": "",
"oncolor": "",
"offvalue": "false",
"offvalueType": "bool",
"officon": "",
"offcolor": "",
"x": 600,
"y": 180,
"wires": [
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{
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"type": "change",
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"action": "",
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"type": "ui_text_input",
"z": "1eaf21c8.f7a21e",
"name": "pump_steps_per_ml",
"label": "Pump: steps per mL",
"tooltip": "",
"group": "6be36295.0ab324",
"order": 5,
"width": 0,
"height": 0,
"passthru": false,
"mode": "number",
"delay": "2000",
"topic": "pump_steps_per_ml",
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"z": "1eaf21c8.f7a21e",
"group": "6be36295.0ab324",
"name": "Stepper controller type header",
"order": 2,
"width": 3,
"height": 1,
"format": "<div>Stepper controller type</div>",
"storeOutMessages": true,
"fwdInMessages": true,
"resendOnRefresh": true,
"templateScope": "local",
"x": 550,
"y": 100,
"wires": [
[]
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},
{
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"type": "ui_template",
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"name": "Information",
"order": 1,
"width": 6,
"height": 3,
"format": "<div style=\"text-align: center;\">\n <p>Changing one of these values will make the python back-end to restart.</p>\n <p><strong style=\"font-size: large;\">If you are not sure, you probably should not be touching anything here!</strong></p>\n</div>",
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"x": 610,
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"wires": [
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"type": "change",
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"name": "Get wb_red_gain",
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"p": "payload",
"pt": "msg",
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"action": "",
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"reg": false,
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"name": "Get wb_blue_gain",
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{
"t": "set",
"p": "payload",
"pt": "msg",
"to": "payload.wb_blue_gain",
"tot": "msg"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 290,
"y": 920,
"wires": [
[
"7b699798.3d568"
]
]
},
{
"id": "56835fa1.2fe538",
"type": "subflow:4ed26b8b.253504",
"z": "bccd1f23.87219",
"name": "",
"env": [],
"x": 720,
"y": 920,
"wires": [
[]
]
},
{
"id": "3ad9835.08c937c",
"type": "function",
"z": "1c24ad9c.bebec2",
"name": "get config payload",
"func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 410,
"y": 160,
"wires": [
[
"2e6ddf51.c0dba"
]
]
},
{
"id": "f408a273.4fb538",
"type": "function",
"z": "b771c342.49603",
"name": "get sample_gear_net_opening",
"func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 350,
"y": 320,
"wires": [
[
"e967b844.46aa48"
]
]
},
{
"id": "fa12f9f8.00cfa8",
"type": "subflow:1c24ad9c.bebec2",
"z": "cb95299c.2817c8",
"name": "",
"env": [],
"x": 210,
"y": 200,
"wires": [
[
"3b72d11c.86e9e6"
]
]
},
{
"id": "3b72d11c.86e9e6",
"type": "function",
"z": "cb95299c.2817c8",
"name": "get process_id",
"func": "msg.payload = msg.payload.process_id;\nmsg.topic = \"process_id\";\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 380,
"y": 200,
"wires": [
[
"c8749cbb.55254"
]
]
},
{
"id": "8dff1648.82e42",
"type": "function",
"z": "b771c342.49603",
"name": "get object_depth_max",
"func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 320,
"y": 240,
"wires": [
[
"9c7f7fc9.c8d3a"
]
]
},
{
"id": "9f04c5ec.75f3d8",
"type": "function",
"z": "b771c342.49603",
"name": "get object_depth_min",
"func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 320,
"y": 280,
"wires": [
[
"317eeeb7.8d3042"
]
]
},
{
"id": "326a1d95.ca21aa",
"type": "subflow:1c24ad9c.bebec2",
"z": "bccd1f23.87219",
"name": "",
"x": 550,
"y": 1080,
"wires": [
[]
]
},
{
"id": "328cec46.09e40c",
"type": "change",
"z": "bccd1f23.87219",
"name": "",
"rules": [
{
"t": "set",
"p": "acq_fnumber_objective",
"pt": "global",
"to": "payload",
"tot": "msg"
}
],
"action": "",
"property": "",
"from": "",
"to": "",
"reg": false,
"x": 920,
"y": 160,
"wires": [
[
"8038414a.34461"
]
]
},
{
"id": "f4f6e3fa.0234f",
"type": "inject",
"z": "9daf9e2b.019fc",
"name": "once",
"props": [
{
"p": "payload"
}
],
"repeat": "",
"crontab": "",
"once": true,
"onceDelay": "",
"topic": "",
"payload": "start",
"payloadType": "str",
"x": 1170,
"y": 460,
"wires": [
[
"7a1dedf.1c63094"
]
]
},
{
"id": "991d1df9.3ffb3",
"type": "function",
"z": "f21ba04.c26266",
"name": "reset wpa_supplicant.conf",
"func": "country_code = flow.get(\"country_code\")\n\nvar template = `sudo tee /etc/wpa_supplicant/wpa_supplicant.conf <<EOF\nctrl_interface=DIR=/var/run/wpa_supplicant GROUP=netdev\nupdate_config=1\ncountry=${country_code}\n\nEOF`\n\nmsg.payload = template\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 660,
"y": 460,
"wires": [
[
"2124997d.2cbf0e"
]
]
},
{
"id": "2124997d.2cbf0e",
"type": "exec",
"z": "f21ba04.c26266",
"command": "",
"addpay": true,
"append": "",
"useSpawn": "false",
"timer": "",
"oldrc": false,
"name": "resetConf",
"x": 880,
"y": 460,
"wires": [
[],
[],
[]
]
},
{
"id": "8b3a1ecb.c4d2e8",
"type": "ui_button",
"z": "f21ba04.c26266",
"name": "",
"group": "9e409235.73cd7",
"order": 6,
"width": 0,
"height": 0,
"passthru": false,
"label": "Reset wifi networks",
"tooltip": "",
"color": "",
"bgcolor": "#AD1625",
"icon": "",
"payload": "country_code",
"payloadType": "flow",
"topic": "",
"x": 410,
"y": 460,
"wires": [
[
"991d1df9.3ffb3"
]
]
},
{
"id": "c5b1e763.d1bba8",
"type": "function",
"z": "1371dec5.76e671",
"name": "error message",
"func": "switch (msg.payload.code){\ncase 0:\n msg.payload = \"/home/pi/data was purged successfully!\";\n break;\ndefault:\n msg.payload = \"There was an error! The error code is \" + msg.payload.code;\n break;\n}\nreturn msg;",
"outputs": 1,
"noerr": 0,
"initialize": "",
"finalize": "",
"x": 900,
"y": 980,
"wires": [
[
"81a48376.27a66"
]
]
},
{
"id": "6d09f428.930bcc",
"type": "delay",
"z": "1371dec5.76e671",
"name": "",
"pauseType": "rate",
"timeout": "5",
"timeoutUnits": "seconds",
"rate": "1",
"nbRateUnits": "1",
"rateUnits": "minute",
"randomFirst": "1",
"randomLast": "5",
"randomUnits": "seconds",
"drop": true,
"x": 750,
"y": 420,
"wires": [
[
"24df077a.cb252"
]
]
}
]
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