From 0bf4fd2285225e3537624d865b27dd51e0f0dc0f Mon Sep 17 00:00:00 2001
From: lukas <lukas.fricke@transtitut.org>
Date: Wed, 5 Feb 2025 14:06:48 +0100
Subject: [PATCH] see last commit

---
 observe_bact.html | 136 ++++++++++++++++++++++++++++++++++++++++------
 1 file changed, 120 insertions(+), 16 deletions(-)

diff --git a/observe_bact.html b/observe_bact.html
index 8e200a4..08f280a 100644
--- a/observe_bact.html
+++ b/observe_bact.html
@@ -88,36 +88,140 @@
 
       </div>
 
-      <div id = "control-elements" class="col-3 ">
+      <div id = "control-elements" class="col-3">
+        <div class="row">
+        	<div class="col">
+            <label class = "form-label" for="Bacilli_count">
+              Bacilli
+            </label>
+          </div>
+          <div class="col">
+            <input class="form-control" type="number" id="Bacilli_count"
+                        name="Bacilli_count" value=0>
+            </input>
 
+          </div>
+        </div>
+        <div class="row">
+        	<div class="col">
+            <label class = "form-label" for="Cocci_count">
+              Cocci
+            </label>
+          </div>
+          <div class="col">
+            <input class="form-control" type="number" id="Cocci_count"
+                        name="Cocci_count" value=0>
+            </input>
 
-        <div id="organisms-table">
-          <h2> bacteria-candidates </h2>
-          <table id= "org-table" style="width:100%">
-            <thead>
-            <tr>
-              <th>
-                bacteria
-              </th>
-            </tr>
-            </thead>
-            <tbody>
-            </tbody>
-          </table>
+          </div>
+        </div>
+        <div class="row">
+        	<div class="col">
+            <label class = "form-label" for="Pathogen_count">
+              Pathogen
+            </label>
+          </div>
+          <div class="col">
+            <input class="form-control" type="number" id="Pathogen_count"
+                        name="Pathogen_count" value=0>
+            </input>
+
+          </div>
+        </div>
+        <div class="row">
+        	<div class="col">
+            <label class = "form-label" for="total_area">
+              Total area
+            </label>
+          </div>
+          <div class="col">
+            <input class="form-control" type="number" id="total_area"
+                        name="total_area" value=0>
+            </input>
+
+          </div>
         </div>
       </div>
       <div class="row">
         <button class="btn btn-primary float-end" onclick="toggleFullscreen();" id="fullscreen-button">toggle Fullscreen video</button>
-        <button class="btn btn-primary float-end" onclick="toggle_cam();">Toggle camera</button>
         <button class="btn btn-primary float-end" onclick="do_opencv_magic();">opencv</button>
       </div>
     </div>
 
-    </div>
+    <div id="organisms-table">
+      <h2> Bacteria Candidates </h2>
+      <table id= "org-table" style="width:100%">
+        <thead>
+        <tr>
+          <th>
+            Number
+          </th>
+          <th>
+            Image
+          </th>
+          <th>
+            Size [um²]
+          </th>
+          <th>
+            Choose a Frame
+          </th>
+          <th>
+            Choose bacterium Type
+          </th>
 
+        </tr>
+        </thead>
+        <tbody>
+        </tbody>
+      </table>
+      <button class="btn btn-primary float-end" onclick="submit_FoV();">submit FoV</button>
+
+    </div>
+    <div id = "FoV_table_div">
+      <h2> Fields of View </h2>
+      <table id= "FoV_table" style="width:100%">
+        <thead>
+          <th>
+            # FoV
+          </th>
+          <th>
+            Bacilli
+          </th>
+          <th>
+            Cocci
+          </th>
+          <th>
+            Pathogens
+          </th>
+          <th>
+            total Volume
+          </th>
+        </thead>
+        <tbody>
+
+        </tbody>
+
+      </table>
+      <button class="btn btn-primary float-end" onclick="submit_result();">submit result</button>
+
+    </div>
   </div>
+</body>
 
   <script>
+  var microscope_setups = {};
+  var microscope_setup;
+  var default_setup_id;
+  var prep_protocols = {};
+  var prep_protocol;
+  var default_protocol_id;
+  var sample;
+  var samples = {};
+  var FoVs = [];
+  var dilution_chooser = document.querySelector("#dilution");
+
+  var result = [];
+
   function toggleFullscreen() {
     let elem = document.querySelector("#output");
     canvas_draw.style.width = video.offsetWidth