himbeere/open-organism-observer
1
0
Fork 0
Code Issues Pull requests Actions Packages Projects Releases Wiki Activity

changes to the html part

Browse source
This commit is contained in:
lukas fricke 2025-02-05 14:09:24 +01:00
parent c24ce599dc
commit 68af5c4b13
1 changed files with 63 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

65
create_report.html
View file

@ -73,18 +73,78 @@
</table> </table>
</div> </div>
<div id="bacteria_scan_div">
<h2> Bacteria Scan</h2>
<p>
The bacteria scan has been performed on <span id="bact_scan_datetime">???</span>. <br>
</p>
<p>
The sample volume V<sub>Sample</sub> = <span id="sample_volume_bact">???</span> uL
divided by the size of the coverslip A<sub>coverslip</sub> =
<span id="coverslip_height_bact">???</span> mm x <span id="coverslip_width_bact">???</span> mm
yield an observed height of
<br><br>
h<sub>observed</sub> = V<sub>Sample</sub> / A<sub>coverslip</sub> =
<span id="observed_height_bact"></span> um.
<br><br>
Multipilcation with the size of the
the field of view A<sub>FoV</sub> = <span id="FoV_height_bact">???</span> um x
<span id="FoV_width_bact">???</span> um yield
an observed Volume of
<br><br>
V<sub>observed</sub> = h<sub>observed</sub> * A<sub>FoV</sub> = <span id="observed_volume_bact">???</span> uL per FoV.
<p>
The volume of organisms per FoV is multiplied with the
dilution Factor F<sub>dilution</sub> = <span id="dilution_factor_bact">???</span>
and devided by V<sub>observed</sub> to calculate the abundance per uL.<br>
F<sub>multiplication</sub> = F<sub>dilution</sub> * 1 uL / V<sub>observed</sub> = <span id="factor_bact">???</span>
</p>
<h3> Bacteria Table </h3>
<table class="table" id = "bact_scan_table" style="width:100%">
<thead>
<tr>
<th>
type of Bacteria
</th>
<th>
count per FoV
</th>
<th>
area [um²] per FoV
</th>
<th>
number per uL +- [%]
</th>
<th>
~ ug / uL +- [%]
</th>
</tr>
</thead>
<tbody>
</tbody>
</table>
<h3>Bacterial to Fungal Biomass </h3>
<p> The Bacterial m<sub>Bacteria</sub> = <span id="bacterial_biomass">???</span>
to Fungal Biomass m<sub>Fungi</sub> = <span id="fungal_biomass">???</span>.<br>
m<sub>Fungi</sub> / m<sub>Bacteria</sub> = <span id="f_to_b_biomass">???</span>
</p>
</div>
<div id="nematode_scan_div"> <div id="nematode_scan_div">
<h2> Nematode Scan </h2> <h2> Nematode Scan </h2>
<p> <p>
The namatode scan has been performed on <span id="nema_scan_datetime">???</span>. <br> The namatode scan has been performed on <span id="nema_scan_datetime">???</span>
using the protocol <span id= "prep_protocol_name_bact">???</span> and camera setup
<span id=cam_setup_name_bact>???</span>. <br>
To calculate the abundance of nematodes per cubic centimeter of sample the dilution Factor F<sub>dilution</sub> = To calculate the abundance of nematodes per cubic centimeter of sample the dilution Factor F<sub>dilution</sub> =
<span id="dilution_nema">???</span> is divided by the sample size V<sub>sample</sub> = <span id="dilution_nema">???</span> is divided by the sample size V<sub>sample</sub> =
<span id="samplesize_nema">???</span> uL. <br> <span id="samplesize_nema">???</span> uL. <br>
The multiplication factor for the nematode scan is: <br> The multiplication factor for the nematode scan is: <br>
F<sub>nematode</sub> = F<sub>dilution</sub> / V<sub>sample</sub> = <span id="multiplication_factor_nema">???</span> F<sub>nematode</sub> = F<sub>dilution</sub> / V<sub>sample</sub> = <span id="multiplication_factor_nema">???</span>
</p> </p>
<h3> Nematode Table </h3> <h3> Nematode Table </h3>
<table class="table" id = "nema_scan_table" style="width:100%"> <table class="table" id = "nema_scan_table" style="width:100%">
<thead> <thead>
@ -105,6 +165,7 @@
</table> </table>
</div> </div>
</div> </div>
</body> </body>