From 7f2487509e2379cac0076260a432113c8581731c Mon Sep 17 00:00:00 2001 From: lukas Date: Thu, 6 Feb 2025 14:00:58 +0100 Subject: [PATCH] some minor changes to increase readability --- create_report.html | 100 +++++++++++++++++++-------------------------- 1 file changed, 43 insertions(+), 57 deletions(-) diff --git a/create_report.html b/create_report.html index 0e59c8b..d6bfe57 100644 --- a/create_report.html +++ b/create_report.html @@ -29,25 +29,20 @@ ???.

- The sample volume VSample = ??? uL - divided by the size of the coverslip Acoverslip = + Dividing the sample volume VSample = ??? uL + by the size of the coverslip Acoverslip = ??? mm x ??? mm - yield an observed height of -

- hobserved = VSample / Acoverslip = - um. -

- Multipilcation with the size of the - the field of view AFoV = ??? um x - ??? um yield - an observed Volume of -

- Vobserved = hobserved * AFoV = ??? uL per FoV. + yields the observed height hobserved = VSample / Acoverslip = + um. Multipilcation with the size of the the field of view + AFoV = ??? um x + ??? um + yields the observed Volume Vobserved = + hobserved * AFoV = ??? uL per FoV. + The volume of organisms per FoV is multiplied with the + dilution Factor Fdilution = ??? + and devided by Vobserved to calculate the abundance per uL.

- The volume of organisms per FoV is multiplied with the - dilution Factor Fdilution = ??? - and devided by Vobserved to calculate the abundance per uL.
Fmultiplication = Fdilution * 1 uL / Vobserved = ???

@@ -76,29 +71,21 @@

Bacteria Scan

- The bacteria scan has been performed on ???.
+ The bacteria scan has been performed on ???. + Dividing the sample volume VSample = ??? uL + by the size of the coverslip Acoverslip = + ??? mm x ??? mm + yields the observed height hobserved = VSample / Acoverslip = + um. Multipilcation with the size of the + the field of view AFoV = ??? um x + ??? um yields the observed Volume + Vobserved = hobserved * AFoV = ??? uL per FoV. The volume of organisms per FoV is multiplied with the + dilution Factor Fdilution = ??? + and devided by Vobserved to calculate the abundance per uL:

- The sample volume VSample = ??? uL - divided by the size of the coverslip Acoverslip = - ??? mm x ??? mm - yield an observed height of -

- hobserved = VSample / Acoverslip = - um. -

- Multipilcation with the size of the - the field of view AFoV = ??? um x - ??? um yield - an observed Volume of -

- Vobserved = hobserved * AFoV = ??? uL per FoV. -

- The volume of organisms per FoV is multiplied with the - dilution Factor Fdilution = ??? - and devided by Vobserved to calculate the abundance per uL.
- Fmultiplication = Fdilution * 1 uL / Vobserved = ??? -

+ Fmultiplication = Fdilution * 1 uL / Vobserved = ??? +

Bacteria Table

@@ -257,11 +244,14 @@ }; function write_sample_description(sample){ + let latLon = sample.Place.split(', '); + let lat = Number(latLon[0]); + let lon = Number(latLon[1]); document.querySelector("#sample_id").textContent = sample_chooser.value; document.querySelector("#sample_name").textContent = sample.Name; document.querySelector("#sample_type").textContent = sample.Type; - document.querySelector("#sample_date").textContent = sample.Date_Collected; - document.querySelector("#sample_location").textContent = sample.Place; + document.querySelector("#sample_date").textContent = sample.Date_Collected.toDateString() + ' at ' + sample.Date_Collected.toLocaleTimeString(); + document.querySelector("#sample_location").textContent = lat.toFixed(4) + ', ' + lon.toFixed(4); } @@ -276,7 +266,8 @@ multiplication_factor_main_scan = main_result.dilution / observed_volume; - document.querySelector("#main_scan_datetime").textContent = main_result.datetime; + document.querySelector("#main_scan_datetime").textContent = main_result.datetime.toDateString() + ' at ' + main_result.datetime.toLocaleTimeString(); + sample.Date_Collected.toDateString() + ' at ' + sample.Date_Collected.toLocaleTimeString(); document.querySelector("#prep_protocol_name").textContent = prep_protocol.name; document.querySelector("#cam_setup_name").textContent = microscope_setup.name; document.querySelector("#coverslip_height").textContent = microscope_setup.Slip_Height; @@ -289,7 +280,7 @@ document.querySelector("#observed_volume").textContent = observed_volume.toExponential(2); document.querySelector("#dilution_factor").textContent = main_result.dilution; - document.querySelector("#factor").textContent = multiplication_factor_main_scan; + document.querySelector("#factor").textContent = multiplication_factor_main_scan.toFixed(2); } // get results of the main scan + prep_protocol and microscope_setup @@ -470,14 +461,14 @@ case "Actinobacteria": newRow.insertCell(0).innerHTML = key ; // get - newRow.insertCell(1).innerHTML = (mean * Math.pow(10, -6) * multiplication_factor_main_scan).toExponential(2); - newRow.insertCell(2).innerHTML = (stdev/mean * 100); + newRow.insertCell(1).innerHTML = (mean * Math.pow(10, -6) * multiplication_factor_main_scan).toFixed(2); + newRow.insertCell(2).innerHTML = (stdev/mean * 100).toFixed(2); break default: newRow.insertCell(0).innerHTML = key; - newRow.insertCell(1).innerHTML = mean * multiplication_factor_main_scan; - newRow.insertCell(2).innerHTML = (stdev/mean * 100); + newRow.insertCell(1).innerHTML = (mean * multiplication_factor_main_scan).toFixed(2); + newRow.insertCell(2).innerHTML = (stdev/mean * 100).toFixed(2); } } @@ -541,7 +532,7 @@ } function write_nema_scan_description(result, protocol, setup){ multiplication_factor_nema_scan = (result.dilution / protocol.Sample_Size) * Math.pow(10,3); - document.querySelector("#nema_scan_datetime").innerHTML = result.datetime; + document.querySelector("#nema_scan_datetime").innerHTML = result.datetime.toDateString() + ' at ' + result.datetime.toLocaleTimeString(); document.querySelector("#dilution_nema").innerHTML = result.dilution; document.querySelector("#samplesize_nema").innerHTML = protocol.Sample_Size; document.querySelector("#multiplication_factor_nema").innerHTML = multiplication_factor_nema_scan; @@ -640,7 +631,7 @@ function write_bact_scan_description(result, protocol, setup){ multiplication_factor_bact_scan = result.dilution / observed_volume_bact; - document.querySelector("#bact_scan_datetime").textContent = result.datetime; + document.querySelector("#bact_scan_datetime").textContent = result.datetime.toDateString() + " at " + result.datetime.toLocaleTimeString(); document.querySelector("#prep_protocol_name_bact").textContent = protocol.name; document.querySelector("#cam_setup_name_bact").textContent = setup.name; document.querySelector("#coverslip_height_bact").textContent = setup.Slip_Height; @@ -653,7 +644,7 @@ function write_bact_scan_description(result, protocol, setup){ document.querySelector("#observed_volume_bact").textContent = observed_volume_bact.toExponential(2); document.querySelector("#dilution_factor_bact").textContent = result.dilution; - document.querySelector("#factor_bact").textContent = multiplication_factor_bact_scan; + document.querySelector("#factor_bact").textContent = multiplication_factor_bact_scan.toFixed(2); @@ -699,18 +690,13 @@ function render_bact_scan_table(result){ for (let i=0; i