swendel/nix-cyanovision
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Sebastian Wendel 2022-09-28 00:34:06 +02:00
parent 720d250ab9
commit d9ecf261da
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20
README.md
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@ -2,6 +2,19 @@
## Commands ## Commands
### Build a Jupiterhub Docker Container
```sh
nix build .#cyanovision-docker -o ./build/cyanovision.tgz
```
```sh
docker load < ./build/cyanovision.tgz
docker run --rm -it -p 8888:8888 -v $HOME:/mnt cyanovision
```
Now [access JupyterHub webinterface](http://127.0.0.1:8888/lab) to develop Notebooks.
### Run the Cyanovision UI ### Run the Cyanovision UI
```sh ```sh
@ -10,5 +23,10 @@ nix run https://code.curious.bio/curious.bio/nix-cyanovision#.
## Links ## Links
* <https://nixos.org/download.html>
* <https://github.com/IoannouPanayiotis/Sensor-CDT-Team-Challenge-2021-2022> * <https://github.com/IoannouPanayiotis/Sensor-CDT-Team-Challenge-2021-2022>
* <https://nixos.org/download.html>
###
* <https://jupyter.org/hub>
* <https://jupyter-tutorial.readthedocs.io/>

20
flake.nix
View file

@ -26,7 +26,7 @@
iPython = pkgs.kernels.iPythonWith { iPython = pkgs.kernels.iPythonWith {
name = cyanovision.name; name = cyanovision.name;
packages = p: with p; [sympy numpy]; packages = cyanovision.pythonPackages ++ cyanovision.jupyterEnvironment;
ignoreCollisions = true; ignoreCollisions = true;
}; };
@ -50,12 +50,18 @@
libsndfile libsndfile
]; ];
jupyterlabPackages = with pkgs; [
nodejs
npm
];
pythonPackages = with pkgs.python310Packages; [ pythonPackages = with pkgs.python310Packages; [
matplotlib matplotlib
numpy numpy
pathlib2 pathlib2
pillow pillow
pycocotools pycocotools
sympy
tensorflow tensorflow
tkinter tkinter
]; ];
@ -149,12 +155,14 @@
packages.cyanovision-model = cyanovision.packages.cyanovision-model; packages.cyanovision-model = cyanovision.packages.cyanovision-model;
packages.cyanovision-dataset = cyanovision.packages.cyanovision-dataset; packages.cyanovision-dataset = cyanovision.packages.cyanovision-dataset;
packages.tflite-model-maker = cyanovision.packages.tflite-model-maker; packages.tflite-model-maker = cyanovision.packages.tflite-model-maker;
packages.python-venv = python-venv; packages.cyanovision-venv = python-venv;
packages.cyanovision-docker =
packages.docker =
(machNix.mkDockerImage { (machNix.mkDockerImage {
packagesExtra = cyanovision.packagesExtra; # packagesExtra = pkgs.lib.mkMerge (
requirements = cyanovision.pythonPackages; # cyanovision.packagesExtra
# cyanovision.jupyterlabPackages
# );
requirements = "jupyterlab";
_.pytest-cov.propagatedBuildInputs.mod = pySelf: self: oldVal: oldVal ++ [pySelf.tomli]; _.pytest-cov.propagatedBuildInputs.mod = pySelf: self: oldVal: oldVal ++ [pySelf.tomli];
}) })
.override .override