curious.bio/planktoscope
curious.bio/planktoscope
9
0
Fork 0
Code Issues 10 Pull requests Packages Projects 7 Releases Wiki Activity

Update and rename docs/MorphoCut_Installation_and_usage_error.txt to morphocut/morphocut_installation.txt

Browse source
This commit is contained in:
tpollina 2020-01-16 16:16:46 +01:00 committed by GitHub
parent 499c8bdefc
commit 81b8d2b911
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 0 additions and 78 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

78
docs/MorphoCut_Installation_and_usage_error.txt → morphocut/morphocut_installation.txt
View file

@ -225,81 +225,3 @@ Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.7/dist
Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.6.1->pandas->morphocut) (1.12.0)
Installing collected packages: morphocut
Successfully installed morphocut-0.1.1
#########################################################
#########################################################
USAGE ERROR
#########################################################
#########################################################
Processing images under /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15...
0it [00:00, ?it/s]
0it [00:00, ?it/s]Found 94 files in /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15.
Object 35_41_180124_84: : 85it [00:17, 5.95it/s]
Frame 35_41_180124: : 1it [00:17, 17.03s/it]
Object 35_41_763395_168: : 169it [00:24, 47.97it/s]
Frame 35_41_763395: : 2it [00:24, 14.11s/it]
Object 35_42_339153_245: : 245it [00:31, 44.73it/s]
Frame 35_42_339153: : 3it [00:31, 11.93s/it]
Object 35_42_899894_320: : 319it [00:38, 42.28it/s]
Frame 35_42_899894: : 4it [00:38, 10.44s/it]
Object 35_43_467613_394: : 394it [00:45, 44.59it/s]
Frame 35_43_467613: : 5it [00:44, 9.36s/it]
Object 35_44_040639_465: : 466it [00:56, 32.28it/s]
Frame 35_44_040639: : 6it [00:59, 9.95s/it]
Object 35_44_040639_465: : 466it [00:59, 7.78it/s]
Traceback (most recent call last):
File "/home/pi/Downloads/Morphocut.py", line 115, in <module>
p.run()
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 748, in run
for _ in self.transform_stream():
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream
for obj in progress:
File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__
for obj in iterable:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/contrib/ecotaxa.py", line 111, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 184, in transform_stream
for i, obj in enumerate(stream, start=self.start):
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 142, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream
for obj in progress:
File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__
for obj in iterable:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 492, in transform_stream
result = self.transform(*parameters) # pylint: disable=no-member
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 78, in transform
image, in_range=in_range, out_range=self.out_range
File "/home/pi/.local/lib/python3.7/site-packages/skimage/exposure/exposure.py", line 352, in rescale_intensity
image = (image - imin) / float(imax - imin)
MemoryError