Update and rename docs/MorphoCut_Installation_and_usage_error.txt to morphocut/morphocut_installation.txt
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tpollina
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@ -225,81 +225,3 @@ Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.7/dist
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Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.6.1->pandas->morphocut) (1.12.0)
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Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.6.1->pandas->morphocut) (1.12.0)
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Installing collected packages: morphocut
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Installing collected packages: morphocut
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Successfully installed morphocut-0.1.1
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Successfully installed morphocut-0.1.1
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#########################################################
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#########################################################
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USAGE ERROR
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#########################################################
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#########################################################
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Processing images under /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15...
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0it [00:00, ?it/s]
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0it [00:00, ?it/s]Found 94 files in /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15.
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Object 35_41_180124_84: : 85it [00:17, 5.95it/s]
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Frame 35_41_180124: : 1it [00:17, 17.03s/it]
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Object 35_41_763395_168: : 169it [00:24, 47.97it/s]
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Frame 35_41_763395: : 2it [00:24, 14.11s/it]
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Object 35_42_339153_245: : 245it [00:31, 44.73it/s]
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Frame 35_42_339153: : 3it [00:31, 11.93s/it]
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Object 35_42_899894_320: : 319it [00:38, 42.28it/s]
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Frame 35_42_899894: : 4it [00:38, 10.44s/it]
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Object 35_43_467613_394: : 394it [00:45, 44.59it/s]
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Frame 35_43_467613: : 5it [00:44, 9.36s/it]
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Object 35_44_040639_465: : 466it [00:56, 32.28it/s]
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Frame 35_44_040639: : 6it [00:59, 9.95s/it]
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Object 35_44_040639_465: : 466it [00:59, 7.78it/s]
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Traceback (most recent call last):
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File "/home/pi/Downloads/Morphocut.py", line 115, in <module>
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p.run()
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 748, in run
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for _ in self.transform_stream():
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream
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for obj in progress:
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File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__
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for obj in iterable:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/contrib/ecotaxa.py", line 111, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 184, in transform_stream
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for i, obj in enumerate(stream, start=self.start):
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 142, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream
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for obj in progress:
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File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__
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for obj in iterable:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
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for obj in stream:
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 492, in transform_stream
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result = self.transform(*parameters) # pylint: disable=no-member
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File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 78, in transform
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image, in_range=in_range, out_range=self.out_range
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File "/home/pi/.local/lib/python3.7/site-packages/skimage/exposure/exposure.py", line 352, in rescale_intensity
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image = (image - imin) / float(imax - imin)
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MemoryError
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