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Update and rename MorphoCut_Installation.txt to MorphoCut_Installation_and_usage_error.txt

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tpollina 2020-01-16 15:47:42 +01:00 committed by GitHub
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docs/MorphoCut_Installation.txt → docs/MorphoCut_Installation_and_usage_error.txt
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@ -1,3 +1,8 @@
#########################################################
#########################################################
INSTALLATION PROCESS
#########################################################
#########################################################
#########################################################
Installation of MorphoCut development version:
@ -221,3 +226,80 @@ Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from
Installing collected packages: morphocut
Successfully installed morphocut-0.1.1
#########################################################
#########################################################
USAGE ERROR
#########################################################
#########################################################
Processing images under /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15...
0it [00:00, ?it/s]
0it [00:00, ?it/s]Found 94 files in /home/pi/Desktop/PlanktonScope_acquisition/01_16_2020/15.
Object 35_41_180124_84: : 85it [00:17, 5.95it/s]
Frame 35_41_180124: : 1it [00:17, 17.03s/it]
Object 35_41_763395_168: : 169it [00:24, 47.97it/s]
Frame 35_41_763395: : 2it [00:24, 14.11s/it]
Object 35_42_339153_245: : 245it [00:31, 44.73it/s]
Frame 35_42_339153: : 3it [00:31, 11.93s/it]
Object 35_42_899894_320: : 319it [00:38, 42.28it/s]
Frame 35_42_899894: : 4it [00:38, 10.44s/it]
Object 35_43_467613_394: : 394it [00:45, 44.59it/s]
Frame 35_43_467613: : 5it [00:44, 9.36s/it]
Object 35_44_040639_465: : 466it [00:56, 32.28it/s]
Frame 35_44_040639: : 6it [00:59, 9.95s/it]
Object 35_44_040639_465: : 466it [00:59, 7.78it/s]
Traceback (most recent call last):
File "/home/pi/Downloads/Morphocut.py", line 115, in <module>
p.run()
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 748, in run
for _ in self.transform_stream():
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream
for obj in progress:
File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__
for obj in iterable:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/contrib/ecotaxa.py", line 111, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 184, in transform_stream
for i, obj in enumerate(stream, start=self.start):
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 142, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/stream.py", line 68, in transform_stream
for obj in progress:
File "/home/pi/.local/lib/python3.7/site-packages/tqdm/std.py", line 1104, in __iter__
for obj in iterable:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 489, in transform_stream
for obj in stream:
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/core.py", line 492, in transform_stream
result = self.transform(*parameters) # pylint: disable=no-member
File "/home/pi/.local/lib/python3.7/site-packages/morphocut/image.py", line 78, in transform
image, in_range=in_range, out_range=self.out_range
File "/home/pi/.local/lib/python3.7/site-packages/skimage/exposure/exposure.py", line 352, in rescale_intensity
image = (image - imin) / float(imax - imin)
MemoryError