1844 lines
54 KiB
JSON
1844 lines
54 KiB
JSON
[
|
|
{
|
|
"id": "7f885510.6173fc",
|
|
"type": "tab",
|
|
"label": "Flow 1",
|
|
"disabled": false,
|
|
"info": ""
|
|
},
|
|
{
|
|
"id": "4e7b0c26.1eecb4",
|
|
"type": "tab",
|
|
"label": "Flow 2",
|
|
"disabled": false,
|
|
"info": ""
|
|
},
|
|
{
|
|
"id": "b2d230de.b7751",
|
|
"type": "ui_base",
|
|
"theme": {
|
|
"name": "theme-dark",
|
|
"lightTheme": {
|
|
"default": "#0094CE",
|
|
"baseColor": "#0094CE",
|
|
"baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif",
|
|
"edited": true,
|
|
"reset": false
|
|
},
|
|
"darkTheme": {
|
|
"default": "#097479",
|
|
"baseColor": "#097479",
|
|
"baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif",
|
|
"edited": true,
|
|
"reset": false
|
|
},
|
|
"customTheme": {
|
|
"name": "Untitled Theme 1",
|
|
"default": "#4B7930",
|
|
"baseColor": "#4B7930",
|
|
"baseFont": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif",
|
|
"reset": false
|
|
},
|
|
"themeState": {
|
|
"base-color": {
|
|
"default": "#097479",
|
|
"value": "#097479",
|
|
"edited": false
|
|
},
|
|
"page-titlebar-backgroundColor": {
|
|
"value": "#097479",
|
|
"edited": false
|
|
},
|
|
"page-backgroundColor": {
|
|
"value": "#111111",
|
|
"edited": false
|
|
},
|
|
"page-sidebar-backgroundColor": {
|
|
"value": "#000000",
|
|
"edited": false
|
|
},
|
|
"group-textColor": {
|
|
"value": "#0eb8c0",
|
|
"edited": false
|
|
},
|
|
"group-borderColor": {
|
|
"value": "#555555",
|
|
"edited": false
|
|
},
|
|
"group-backgroundColor": {
|
|
"value": "#333333",
|
|
"edited": false
|
|
},
|
|
"widget-textColor": {
|
|
"value": "#eeeeee",
|
|
"edited": false
|
|
},
|
|
"widget-backgroundColor": {
|
|
"value": "#097479",
|
|
"edited": false
|
|
},
|
|
"widget-borderColor": {
|
|
"value": "#333333",
|
|
"edited": false
|
|
},
|
|
"base-font": {
|
|
"value": "-apple-system,BlinkMacSystemFont,Segoe UI,Roboto,Oxygen-Sans,Ubuntu,Cantarell,Helvetica Neue,sans-serif"
|
|
}
|
|
},
|
|
"angularTheme": {
|
|
"primary": "purple",
|
|
"accents": "pink",
|
|
"warn": "indigo",
|
|
"background": "deep-purple",
|
|
"palette": "dark"
|
|
}
|
|
},
|
|
"site": {
|
|
"name": "PlanktonScope GUI v2.1",
|
|
"hideToolbar": "false",
|
|
"allowSwipe": "false",
|
|
"lockMenu": "false",
|
|
"allowTempTheme": "true",
|
|
"dateFormat": "DD/MM/YYYY",
|
|
"sizes": {
|
|
"sx": 48,
|
|
"sy": 48,
|
|
"gx": 6,
|
|
"gy": 6,
|
|
"cx": 6,
|
|
"cy": 6,
|
|
"px": 0,
|
|
"py": 0
|
|
}
|
|
}
|
|
},
|
|
{
|
|
"id": "6b01f851.598028",
|
|
"type": "ui_tab",
|
|
"z": "",
|
|
"name": "PlanktonScope GUI v2.1",
|
|
"icon": "date_range",
|
|
"order": 1,
|
|
"disabled": false,
|
|
"hidden": false
|
|
},
|
|
{
|
|
"id": "c627ea8d.f886e8",
|
|
"type": "ui_group",
|
|
"z": "",
|
|
"name": "General",
|
|
"tab": "6b01f851.598028",
|
|
"order": 1,
|
|
"disp": true,
|
|
"width": 5,
|
|
"collapse": false
|
|
},
|
|
{
|
|
"id": "c62ffbd3.787ef8",
|
|
"type": "ui_group",
|
|
"z": "",
|
|
"name": "Preview",
|
|
"tab": "6b01f851.598028",
|
|
"order": 2,
|
|
"disp": true,
|
|
"width": 12,
|
|
"collapse": false
|
|
},
|
|
{
|
|
"id": "832434ce.ebe498",
|
|
"type": "ui_group",
|
|
"z": "",
|
|
"name": "Optic Settings",
|
|
"tab": "6b01f851.598028",
|
|
"order": 3,
|
|
"disp": true,
|
|
"width": 8,
|
|
"collapse": false
|
|
},
|
|
{
|
|
"id": "a72a9ec6.bb144",
|
|
"type": "ui_group",
|
|
"z": "",
|
|
"name": "Fluidic settings",
|
|
"tab": "6b01f851.598028",
|
|
"order": 4,
|
|
"disp": true,
|
|
"width": 5,
|
|
"collapse": false
|
|
},
|
|
{
|
|
"id": "106f0e1b.6478a2",
|
|
"type": "ui_group",
|
|
"z": "",
|
|
"name": "Spatio Temporal",
|
|
"tab": "6b01f851.598028",
|
|
"order": 5,
|
|
"disp": true,
|
|
"width": 8,
|
|
"collapse": false
|
|
},
|
|
{
|
|
"id": "77a6994b.e3efb8",
|
|
"type": "ui_group",
|
|
"z": "",
|
|
"name": "General",
|
|
"tab": "6b01f851.598028",
|
|
"order": 6,
|
|
"disp": true,
|
|
"width": 5,
|
|
"collapse": false
|
|
},
|
|
{
|
|
"id": "955fdac.f54f328",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_ship",
|
|
"label": "Name of the ship",
|
|
"tooltip": "",
|
|
"group": "c627ea8d.f886e8",
|
|
"order": 2,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"mode": "text",
|
|
"delay": 300,
|
|
"topic": "sample_ship",
|
|
"x": 170,
|
|
"y": 100,
|
|
"wires": [
|
|
[
|
|
"3dd9a121.e386de"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "dfb29406.d68148",
|
|
"type": "ui_dropdown",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_sampling_gear",
|
|
"label": "Sampling gear",
|
|
"tooltip": "",
|
|
"place": "Select",
|
|
"group": "c627ea8d.f886e8",
|
|
"order": 5,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"options": [
|
|
{
|
|
"label": "Plankton net",
|
|
"value": "net",
|
|
"type": "str"
|
|
},
|
|
{
|
|
"label": "Niskin bottle 12L",
|
|
"value": "niskin_12L",
|
|
"type": "str"
|
|
},
|
|
{
|
|
"label": "Niskin bottle 24L",
|
|
"value": "niskin_24L",
|
|
"type": "str"
|
|
}
|
|
],
|
|
"payload": "",
|
|
"topic": "sample_sampling_gear",
|
|
"x": 130,
|
|
"y": 220,
|
|
"wires": [
|
|
[
|
|
"8861710f.55b92"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "bfce92c6.5f66a",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_operator",
|
|
"label": "Name of the operator",
|
|
"tooltip": "",
|
|
"group": "c627ea8d.f886e8",
|
|
"order": 4,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"mode": "text",
|
|
"delay": 300,
|
|
"topic": "sample_operator",
|
|
"x": 150,
|
|
"y": 180,
|
|
"wires": [
|
|
[
|
|
"3dd9a121.e386de"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "bae9c122.3612f",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_project",
|
|
"label": "Name of the project*",
|
|
"tooltip": "",
|
|
"group": "c627ea8d.f886e8",
|
|
"order": 1,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"mode": "text",
|
|
"delay": 300,
|
|
"topic": "sample_project",
|
|
"x": 160,
|
|
"y": 40,
|
|
"wires": [
|
|
[
|
|
"3dd9a121.e386de",
|
|
"a8cb0c6e.7220d"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "eb39c21c.a3fec",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "object_lat",
|
|
"label": "Lattitude (decimal degrees)",
|
|
"tooltip": "",
|
|
"group": "106f0e1b.6478a2",
|
|
"order": 6,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"mode": "number",
|
|
"delay": 300,
|
|
"topic": "object_lat",
|
|
"x": 1020,
|
|
"y": 320,
|
|
"wires": [
|
|
[
|
|
"c650b922.6adef8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "404b41a5.ae3d5",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "object_lon",
|
|
"label": "Longitude (decimal degrees)",
|
|
"tooltip": "",
|
|
"group": "106f0e1b.6478a2",
|
|
"order": 7,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"mode": "number",
|
|
"delay": 300,
|
|
"topic": "object_lon",
|
|
"x": 1010,
|
|
"y": 360,
|
|
"wires": [
|
|
[
|
|
"c650b922.6adef8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "d90c72f2.cf1ca",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_id",
|
|
"label": "Name of the station*",
|
|
"tooltip": "",
|
|
"group": "c627ea8d.f886e8",
|
|
"order": 3,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"mode": "text",
|
|
"delay": 300,
|
|
"topic": "sample_id",
|
|
"x": 170,
|
|
"y": 140,
|
|
"wires": [
|
|
[
|
|
"3dd9a121.e386de"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "3300f426.cc515c",
|
|
"type": "ui_dropdown",
|
|
"z": "7f885510.6173fc",
|
|
"name": "acq_fnumber_objective",
|
|
"label": "M12 Lens*",
|
|
"tooltip": "",
|
|
"place": "Select option",
|
|
"group": "832434ce.ebe498",
|
|
"order": 1,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"options": [
|
|
{
|
|
"label": "f 25mm 1/2\" 5MP IR",
|
|
"value": 25,
|
|
"type": "num"
|
|
},
|
|
{
|
|
"label": "f 16mm 1/2.5\" 5MP IR",
|
|
"value": 16,
|
|
"type": "num"
|
|
},
|
|
{
|
|
"label": "f 12mm 1/2.5\" 5MP IR",
|
|
"value": 12,
|
|
"type": "num"
|
|
},
|
|
{
|
|
"label": "f 8mm 1/2.5\" 5MP IR",
|
|
"value": 8,
|
|
"type": "num"
|
|
},
|
|
{
|
|
"label": "f 6mm 1/2.5\" 5MP IR",
|
|
"value": 6,
|
|
"type": "num"
|
|
}
|
|
],
|
|
"payload": "",
|
|
"topic": "acq_fnumber_objective",
|
|
"x": 1030,
|
|
"y": 40,
|
|
"wires": [
|
|
[
|
|
"de455648.b432f8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "72d57e31.59234",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "832434ce.ebe498",
|
|
"name": "Magnification",
|
|
"order": 2,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Magnification : X\n <span id=\"obj_magnification\" ng-bind-html=\"msg.payload\">\n </span>\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 1590,
|
|
"y": 40,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "98a4bc0a.f3304",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "77a6994b.e3efb8",
|
|
"name": "Instrument",
|
|
"order": 1,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Instrument :\n <span id=\"acq_instrument\">\n PlanktonScope V2.1\n </span>\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 170,
|
|
"y": 420,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "53b3cb43.2acf04",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "77a6994b.e3efb8",
|
|
"name": "Software",
|
|
"order": 2,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Software :\n <span id=\"acq_software\">\n Node-RED Dashboard\n </span>\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 180,
|
|
"y": 460,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "1a0a45f1.2cd7da",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "77a6994b.e3efb8",
|
|
"name": "Camera",
|
|
"order": 3,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Camera :\n <span id=\"acq_camera_name\">\n Pi Camera v2.1\n </span>\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 180,
|
|
"y": 500,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "de455648.b432f8",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "calculate",
|
|
"func": "global.set(msg.topic,msg.payload);\nvar acq_fnumber_objective = String(global.get(msg.topic));\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n global.set(\"magnification\",0.6);\n global.set(\"process_pixel\",1.86);\n global.set(\"sug_min\",60);\n global.set(\"sug_max\",670);\n global.set(\"flowrate\",3);\n break;\n case \"16\":\n global.set(\"magnification\",0.94);\n global.set(\"process_pixel\",1.19);\n global.set(\"sug_min\",40);\n global.set(\"sug_max\",430);\n global.set(\"flowrate\",2.4);\n break;\n case \"12\":\n global.set(\"magnification\",1.20);\n global.set(\"process_pixel\",0.94);\n global.set(\"sug_min\",30);\n global.set(\"sug_max\",340);\n global.set(\"flowrate\",1.25);\n break;\n case \"8\":\n global.set(\"magnification\",1.78);\n global.set(\"process_pixel\",0.63);\n global.set(\"sug_min\",20);\n global.set(\"sug_max\",230);\n global.set(\"flowrate\",0.42);\n break;\n case \"6\":\n global.set(\"magnification\",2.36);\n global.set(\"process_pixel\",0.48);\n global.set(\"sug_min\",15);\n global.set(\"sug_max\",170);\n global.set(\"flowrate\",0.32);\n break;\n}\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 1220,
|
|
"y": 40,
|
|
"wires": [
|
|
[
|
|
"c83fc403.8ba2d8",
|
|
"48d9cc9c.852214",
|
|
"44969aec.4e87e4",
|
|
"a1201a.dc3f8fe8",
|
|
"89b9399b.9389a8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "f3aa18d.65f0de8",
|
|
"type": "ui_dropdown",
|
|
"z": "7f885510.6173fc",
|
|
"name": "acq_celltype",
|
|
"label": "Thickness flowcell*",
|
|
"tooltip": "",
|
|
"place": "Select option",
|
|
"group": "a72a9ec6.bb144",
|
|
"order": 1,
|
|
"width": 0,
|
|
"height": 0,
|
|
"passthru": true,
|
|
"options": [
|
|
{
|
|
"label": "200 μm µ-Slide I Luer",
|
|
"value": 200,
|
|
"type": "num"
|
|
},
|
|
{
|
|
"label": "400 μm µ-Slide I Luer",
|
|
"value": 400,
|
|
"type": "num"
|
|
},
|
|
{
|
|
"label": "600 μm µ-Slide I Luer",
|
|
"value": 600,
|
|
"type": "num"
|
|
},
|
|
{
|
|
"label": "800 μm µ-Slide I Luer",
|
|
"value": 800,
|
|
"type": "num"
|
|
}
|
|
],
|
|
"payload": "",
|
|
"topic": "acq_celltype",
|
|
"x": 170,
|
|
"y": 280,
|
|
"wires": [
|
|
[
|
|
"8861710f.55b92"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "45568fe8.67759",
|
|
"type": "ui_numeric",
|
|
"z": "7f885510.6173fc",
|
|
"name": "acq_minimum_mesh",
|
|
"label": "Min fraction size (μm)",
|
|
"tooltip": "",
|
|
"group": "a72a9ec6.bb144",
|
|
"order": 2,
|
|
"width": 0,
|
|
"height": 0,
|
|
"wrap": false,
|
|
"passthru": true,
|
|
"topic": "acq_minimum_mesh",
|
|
"format": "{{value}}",
|
|
"min": 0,
|
|
"max": "300",
|
|
"step": "10",
|
|
"x": 140,
|
|
"y": 320,
|
|
"wires": [
|
|
[
|
|
"8861710f.55b92"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "918b69e2.7e6e88",
|
|
"type": "ui_numeric",
|
|
"z": "7f885510.6173fc",
|
|
"name": "acq_maximum_mesh",
|
|
"label": "Max fraction size (μm)",
|
|
"tooltip": "",
|
|
"group": "a72a9ec6.bb144",
|
|
"order": 3,
|
|
"width": 0,
|
|
"height": 0,
|
|
"wrap": false,
|
|
"passthru": true,
|
|
"topic": "acq_maximum_mesh",
|
|
"format": "{{value}}",
|
|
"min": "200",
|
|
"max": "2000",
|
|
"step": "100",
|
|
"x": 140,
|
|
"y": 360,
|
|
"wires": [
|
|
[
|
|
"8861710f.55b92"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "86d762dc.47911",
|
|
"type": "ui_switch",
|
|
"z": "7f885510.6173fc",
|
|
"name": "light_state",
|
|
"label": "Light",
|
|
"tooltip": "",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 2,
|
|
"width": 2,
|
|
"height": 1,
|
|
"passthru": true,
|
|
"decouple": "false",
|
|
"topic": "",
|
|
"style": "",
|
|
"onvalue": "true",
|
|
"onvalueType": "bool",
|
|
"onicon": "",
|
|
"oncolor": "",
|
|
"offvalue": "false",
|
|
"offvalueType": "bool",
|
|
"officon": "",
|
|
"offcolor": "",
|
|
"x": 510,
|
|
"y": 100,
|
|
"wires": [
|
|
[
|
|
"b5a366b4.cb6918"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "b5a366b4.cb6918",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "python3.7 $HOME/PlanktonScope/scripts/light.py",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "light.py",
|
|
"x": 820,
|
|
"y": 100,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "node-red/light.svg"
|
|
},
|
|
{
|
|
"id": "5ea28a70.42ae14",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "up",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 4,
|
|
"width": 1,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"label": "",
|
|
"tooltip": "",
|
|
"color": "",
|
|
"bgcolor": "",
|
|
"icon": "arrow_upwards",
|
|
"payload": "up",
|
|
"payloadType": "str",
|
|
"topic": "up",
|
|
"x": 530,
|
|
"y": 220,
|
|
"wires": [
|
|
[
|
|
"523fdeaa.50c6c"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "27f16831.dde938",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "down",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 6,
|
|
"width": 1,
|
|
"height": 1,
|
|
"passthru": true,
|
|
"label": "",
|
|
"tooltip": "",
|
|
"color": "",
|
|
"bgcolor": "",
|
|
"icon": "arrow_downward",
|
|
"payload": "down",
|
|
"payloadType": "str",
|
|
"topic": "down",
|
|
"x": 530,
|
|
"y": 300,
|
|
"wires": [
|
|
[
|
|
"523fdeaa.50c6c"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "855e9d96.ab869",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "nb_step",
|
|
"label": "nb step (30μm/step)",
|
|
"tooltip": "",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 5,
|
|
"width": 3,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"mode": "number",
|
|
"delay": 300,
|
|
"topic": "nb_step",
|
|
"x": 520,
|
|
"y": 260,
|
|
"wires": [
|
|
[
|
|
"523fdeaa.50c6c"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "b110542b.5de4f8",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "kill_focus",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 7,
|
|
"width": 3,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"label": "Cancel focus",
|
|
"tooltip": "",
|
|
"color": "#AD1625",
|
|
"bgcolor": "#333333",
|
|
"icon": "pause",
|
|
"payload": "",
|
|
"payloadType": "str",
|
|
"topic": "",
|
|
"x": 520,
|
|
"y": 340,
|
|
"wires": [
|
|
[
|
|
"d9dea2bc.47097"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "523fdeaa.50c6c",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "focus",
|
|
"func": "if(msg.topic === \"nb_step\"){\n nb_step = msg.payload;\n global.set(\"nb_step\",nb_step);\n}\nif(msg.topic === \"up\"){\n\n nb_step = global.get(\"nb_step\");\n\n orientation = \"up\";\n\n msg.payload = String(nb_step).concat(' ', orientation);\n return msg;\n}\nif(msg.topic === \"down\"){\n \n nb_step = global.get(\"nb_step\");\n\n orientation = \"down\";\n msg.payload = String(nb_step).concat(' ', orientation);\n\n return msg;\n}\n\n",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 670,
|
|
"y": 260,
|
|
"wires": [
|
|
[
|
|
"ada728bd.8e7818"
|
|
]
|
|
],
|
|
"info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
|
|
},
|
|
{
|
|
"id": "ada728bd.8e7818",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "python3.7 $HOME/PlanktonScope/scripts/focus.py",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "focus.py",
|
|
"x": 820,
|
|
"y": 260,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "node-red/sort.svg"
|
|
},
|
|
{
|
|
"id": "d9dea2bc.47097",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "bash $HOME/PlanktonScope/scripts/killer.sh focus.py && bash $HOME/PlanktonScope/scripts/killer.sh focus.py",
|
|
"addpay": false,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "Kill Focus",
|
|
"x": 820,
|
|
"y": 340,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "font-awesome/fa-stop"
|
|
},
|
|
{
|
|
"id": "2d0f6720.0f92f8",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "832434ce.ebe498",
|
|
"name": "Pi Camera settings",
|
|
"order": 7,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<button class=\"md-raised md-button md-ink-ripple\" type=\"button\" onclick=\"window.location.href = 'http://127.0.0.1/html/';\">Pi Camera settings</button>\n",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 1010,
|
|
"y": 100,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "9599b953.529c28",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "832434ce.ebe498",
|
|
"name": "process_pixel",
|
|
"order": 3,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Pixel resolution :\n <span id=\"process_pixel\" ng-bind-html=\"msg.payload\"></span>\n μm\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 1600,
|
|
"y": 80,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "612e2b9b.ed1684",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "832434ce.ebe498",
|
|
"name": "min_size",
|
|
"order": 4,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Smallest cells to explore :\n <span id=\"min_size\" ng-bind-html=\"msg.payload\"></span>\n μm\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 1580,
|
|
"y": 120,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "f84ab57a.556df8",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "832434ce.ebe498",
|
|
"name": "max_size",
|
|
"order": 5,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Biggest cells to explore :\n <span id=\"max_size\" ng-bind-html=\"msg.payload\"></span>\n μm\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 1580,
|
|
"y": 160,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "45f53656.d631e8",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "832434ce.ebe498",
|
|
"name": "flowrate",
|
|
"order": 6,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Flowrate :\n <span id=\"max_size\" ng-bind-html=\"msg.payload\"></span>\n ml/min\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 1580,
|
|
"y": 200,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "53ec5f97.7567c",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "c62ffbd3.787ef8",
|
|
"name": "Stream Pi Camera",
|
|
"order": 1,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<center><iframe id=\"inlineFrameExample\"\n title=\"Inline Frame Example\"\n height=\"384\"\n width=\"512\"\n frameborder=\"0\"\n src=\"http://127.0.0.1/html/min.php\">\n</iframe></center>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 570,
|
|
"y": 40,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "c84f1718.4af6b8",
|
|
"type": "ui_switch",
|
|
"z": "7f885510.6173fc",
|
|
"name": "fan_state",
|
|
"label": "Fan",
|
|
"tooltip": "",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 3,
|
|
"width": 2,
|
|
"height": 1,
|
|
"passthru": true,
|
|
"decouple": "false",
|
|
"topic": "",
|
|
"style": "",
|
|
"onvalue": "true",
|
|
"onvalueType": "bool",
|
|
"onicon": "",
|
|
"oncolor": "",
|
|
"offvalue": "false",
|
|
"offvalueType": "bool",
|
|
"officon": "",
|
|
"offcolor": "",
|
|
"x": 520,
|
|
"y": 160,
|
|
"wires": [
|
|
[
|
|
"dec2b84a.6faa18"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "dec2b84a.6faa18",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "python3.7 $HOME/PlanktonScope/scripts/fan.py",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "fan.py",
|
|
"x": 810,
|
|
"y": 160,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "font-awesome/fa-spinner"
|
|
},
|
|
{
|
|
"id": "7923e634.673cd8",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "in_path",
|
|
"label": "Directory*",
|
|
"tooltip": "",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 12,
|
|
"width": 6,
|
|
"height": 1,
|
|
"passthru": true,
|
|
"mode": "text",
|
|
"delay": 300,
|
|
"topic": "in_path",
|
|
"x": 520,
|
|
"y": 580,
|
|
"wires": [
|
|
[
|
|
"263878b3.e0a478"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "477dc1bd.c3de8",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "acq_id",
|
|
"label": "Acquisition ID*",
|
|
"tooltip": "",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 13,
|
|
"width": 6,
|
|
"height": 1,
|
|
"passthru": true,
|
|
"mode": "text",
|
|
"delay": 300,
|
|
"topic": "acq_id",
|
|
"x": 530,
|
|
"y": 620,
|
|
"wires": [
|
|
[
|
|
"263878b3.e0a478"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "3dd9a121.e386de",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "set global",
|
|
"func": "var value = msg.payload.split(' ').join('_');\nvar key = msg.topic;\n\nglobal.set(key,value);",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 340,
|
|
"y": 40,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "c83fc403.8ba2d8",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "get magnification",
|
|
"func": "var magnification = global.get(\"magnification\");\nmsg.payload = magnification;\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 1410,
|
|
"y": 40,
|
|
"wires": [
|
|
[
|
|
"72d57e31.59234"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "48d9cc9c.852214",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "get process_pixel",
|
|
"func": "var process_pixel = global.get(\"process_pixel\");\nmsg.payload = process_pixel;\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 1410,
|
|
"y": 80,
|
|
"wires": [
|
|
[
|
|
"9599b953.529c28"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "44969aec.4e87e4",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "get sug_min",
|
|
"func": "var sug_min = global.get(\"sug_min\");\nmsg.payload = sug_min;\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 1390,
|
|
"y": 120,
|
|
"wires": [
|
|
[
|
|
"612e2b9b.ed1684"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "a1201a.dc3f8fe8",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "get sug_max",
|
|
"func": "var sug_max = global.get(\"sug_max\");\nmsg.payload = sug_max;\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 1390,
|
|
"y": 160,
|
|
"wires": [
|
|
[
|
|
"f84ab57a.556df8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "89b9399b.9389a8",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "get flowrate",
|
|
"func": "var flowrate = global.get(\"flowrate\");\nmsg.payload = flowrate\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 1390,
|
|
"y": 200,
|
|
"wires": [
|
|
[
|
|
"45f53656.d631e8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "c650b922.6adef8",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "set global",
|
|
"func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 1180,
|
|
"y": 320,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "e4c54d5a.19ff3",
|
|
"type": "ui_numeric",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_year",
|
|
"label": "/",
|
|
"tooltip": "",
|
|
"group": "106f0e1b.6478a2",
|
|
"order": 3,
|
|
"width": 3,
|
|
"height": 1,
|
|
"wrap": false,
|
|
"passthru": true,
|
|
"topic": "sample_year",
|
|
"format": "{{value}}",
|
|
"min": "2019",
|
|
"max": "2050",
|
|
"step": 1,
|
|
"x": 1010,
|
|
"y": 480,
|
|
"wires": [
|
|
[
|
|
"c650b922.6adef8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "b45db708.cedec8",
|
|
"type": "ui_numeric",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_month",
|
|
"label": "/",
|
|
"tooltip": "",
|
|
"group": "106f0e1b.6478a2",
|
|
"order": 2,
|
|
"width": 2,
|
|
"height": 1,
|
|
"wrap": false,
|
|
"passthru": true,
|
|
"topic": "sample_month",
|
|
"format": "{{value}}",
|
|
"min": "1",
|
|
"max": "12",
|
|
"step": 1,
|
|
"x": 1000,
|
|
"y": 440,
|
|
"wires": [
|
|
[
|
|
"c650b922.6adef8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "6351d257.6d7f1c",
|
|
"type": "ui_numeric",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_day",
|
|
"label": "Date*",
|
|
"tooltip": "",
|
|
"group": "106f0e1b.6478a2",
|
|
"order": 1,
|
|
"width": 3,
|
|
"height": 1,
|
|
"wrap": false,
|
|
"passthru": true,
|
|
"topic": "sample_day",
|
|
"format": "{{value}}",
|
|
"min": "1",
|
|
"max": "31",
|
|
"step": 1,
|
|
"x": 1010,
|
|
"y": 400,
|
|
"wires": [
|
|
[
|
|
"c650b922.6adef8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "9ee03294.39987",
|
|
"type": "ui_numeric",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_hour",
|
|
"label": "Time*",
|
|
"tooltip": "",
|
|
"group": "106f0e1b.6478a2",
|
|
"order": 4,
|
|
"width": 5,
|
|
"height": 1,
|
|
"wrap": false,
|
|
"passthru": true,
|
|
"topic": "sample_hour",
|
|
"format": "{{value}}",
|
|
"min": "0",
|
|
"max": "24",
|
|
"step": 1,
|
|
"x": 1010,
|
|
"y": 520,
|
|
"wires": [
|
|
[
|
|
"c650b922.6adef8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "5bd11314.ae6e4c",
|
|
"type": "ui_numeric",
|
|
"z": "7f885510.6173fc",
|
|
"name": "sample_minute",
|
|
"label": ":",
|
|
"tooltip": "",
|
|
"group": "106f0e1b.6478a2",
|
|
"order": 5,
|
|
"width": 3,
|
|
"height": 1,
|
|
"wrap": false,
|
|
"passthru": true,
|
|
"topic": "sample_minute",
|
|
"format": "{{value}}",
|
|
"min": "0",
|
|
"max": "59",
|
|
"step": 1,
|
|
"x": 1000,
|
|
"y": 560,
|
|
"wires": [
|
|
[
|
|
"c650b922.6adef8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "8861710f.55b92",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "set global",
|
|
"func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 340,
|
|
"y": 220,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "a8cb0c6e.7220d",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "store generic",
|
|
"func": "global.set(\"acq_instrument\",\"PlanktonScope V2.1\");\nglobal.set(\"acq_software\",\"Node-RED Dashboard\");\nglobal.set(\"acq_camera\",\"Pi Camera V2.1\");\nglobal.set(\"acq_instrument_ID\",\"Odezenne\");",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 350,
|
|
"y": 420,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "263878b3.e0a478",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "set global",
|
|
"func": "var value = msg.payload;\nvar key = msg.topic;\n\nglobal.set(key,value);",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 680,
|
|
"y": 600,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "f84c662c.df8248",
|
|
"type": "function",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"name": "Image",
|
|
"func": "var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\nvar acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"start\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id, flowrate].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 370,
|
|
"y": 480,
|
|
"wires": [
|
|
[
|
|
"802532e3.f89bc",
|
|
"dd01a090.6bec9"
|
|
]
|
|
],
|
|
"info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "
|
|
},
|
|
{
|
|
"id": "9ac0625a.53e68",
|
|
"type": "exec",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"command": "python3.7 $HOME/PlanktonScope/scripts/image.py",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "image.py",
|
|
"x": 760,
|
|
"y": 420,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "node-red/arrow-in.svg"
|
|
},
|
|
{
|
|
"id": "6b594814.3fa0b8",
|
|
"type": "exec",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"command": "bash $HOME/RPi_Cam_Web_Interface/stop.sh",
|
|
"addpay": false,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "Kill RPi Web Interface",
|
|
"x": 800,
|
|
"y": 500,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "802532e3.f89bc",
|
|
"type": "delay",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"name": "",
|
|
"pauseType": "delay",
|
|
"timeout": "5",
|
|
"timeoutUnits": "seconds",
|
|
"rate": "1",
|
|
"nbRateUnits": "1",
|
|
"rateUnits": "second",
|
|
"randomFirst": "1",
|
|
"randomLast": "5",
|
|
"randomUnits": "seconds",
|
|
"drop": false,
|
|
"x": 600,
|
|
"y": 440,
|
|
"wires": [
|
|
[
|
|
"9ac0625a.53e68"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "1500affd.e4407",
|
|
"type": "exec",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"command": "bash $HOME/RPi_Cam_Web_Interface/start.sh",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "Restart RPi Web Interface",
|
|
"x": 810,
|
|
"y": 580,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "dd01a090.6bec9",
|
|
"type": "delay",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"name": "",
|
|
"pauseType": "delay",
|
|
"timeout": "2",
|
|
"timeoutUnits": "seconds",
|
|
"rate": "1",
|
|
"nbRateUnits": "1",
|
|
"rateUnits": "second",
|
|
"randomFirst": "1",
|
|
"randomLast": "5",
|
|
"randomUnits": "seconds",
|
|
"drop": false,
|
|
"x": 600,
|
|
"y": 500,
|
|
"wires": [
|
|
[
|
|
"6b594814.3fa0b8"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "c1091e12.4fe17",
|
|
"type": "function",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"name": "wait",
|
|
"func": "var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n duration = String('500');\n break;\n case \"16\":\n duration = String('620');\n break;\n case \"12\":\n duration = String('1170');\n break;\n case \"8\":\n duration = String('3450');\n break;\n case \"6\":\n duration = String('4520');\n break;\n}\n\nmsg.payload = duration;\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 610,
|
|
"y": 560,
|
|
"wires": [
|
|
[
|
|
"1500affd.e4407"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "46d0bcb6.694744",
|
|
"type": "exec",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"command": "bash $HOME/PlanktonScope/scripts/kill_image.sh",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "Kill Image",
|
|
"x": 760,
|
|
"y": 640,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "182d9940.d0c327",
|
|
"type": "function",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"name": "Image",
|
|
"func": "var in_path = context.get(\"in_path\") || 0; //get from context or default to 0\nvar sample_project = context.get(\"sample_project\") || 0; //get from context or default to 0\nvar sample_id = context.get(\"sample_id\") || 0; //get from context or default to 0\nvar acq_id = context.get(\"acq_id\") || 0; //get from context or default to 0\n\nswitch (msg.topic){\n case \"in_path\":\n in_path = msg.payload; //payload NOT paydoad :)\n context.set(\"in_path\", in_path); //store in context for next time \n break;\n case \"sample_project\":\n sample_project = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_project\", sample_project); //store in context for next time \n break;\n case \"sample_id\":\n sample_id = msg.payload; //payload NOT paydoad :)\n context.set(\"sample_id\", sample_id); //store in context for next time \n break;\n case \"acq_id\":\n acq_id = msg.payload; //payload NOT paydoad :)\n context.set(\"acq_id\", acq_id); //store in context for next time \n break;\n}\nif(msg.topic === \"stop\"){\n \n in_path = String(in_path);\n sample_project = String(sample_project);\n sample_id = String(sample_id);\n acq_id = String(acq_id);\n\n msg.payload = [in_path, sample_project, sample_id, acq_id].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 610,
|
|
"y": 640,
|
|
"wires": [
|
|
[
|
|
"46d0bcb6.694744"
|
|
]
|
|
],
|
|
"info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "
|
|
},
|
|
{
|
|
"id": "ddc97106.8b2e7",
|
|
"type": "exec",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"command": "python3.7 $HOME/PlanktonScope/scripts/pump.py",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "pump.py",
|
|
"x": 760,
|
|
"y": 360,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "f5e45860.0bc0d8",
|
|
"type": "function",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"name": "Image",
|
|
"func": "var acq_fnumber_objective = String(msg.payload);\n\nswitch(acq_fnumber_objective) {\n case \"25\":\n flowrate = String(' 3');\n break;\n case \"16\":\n flowrate = String(' 2.4');\n break;\n case \"12\":\n flowrate = String(' 1.25');\n break;\n case \"8\":\n flowrate = String(' 0.42');\n break;\n case \"6\":\n flowrate = String(' 0.32');\n break;\n}\n\nif(msg.topic === \"start\"){\n \n msg.payload = [\"24\", flowrate, \"foward\"].filter(x => typeof x === 'string' && x.length > 0).join(\" \");\n return msg;\n}",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 470,
|
|
"y": 400,
|
|
"wires": [
|
|
[
|
|
"ddc97106.8b2e7"
|
|
]
|
|
],
|
|
"info": "### Image\n##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`\n\n- `in_path` : **string** - directory to store acquisitions **the path has to end with /**\n- `sample_project` : **string**\n- `sample_id` : **string**\n- `acq_id` : **string**\n- `volume` : **integer**\n- `flowrate` : **float**\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2\n "
|
|
},
|
|
{
|
|
"id": "d324c4b.31afb38",
|
|
"type": "exec",
|
|
"z": "4e7b0c26.1eecb4",
|
|
"command": "bash $HOME/PlanktonScope/scripts/killer.sh pump.py && bash $HOME/PlanktonScope/scripts/killer.sh pump.py",
|
|
"addpay": false,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "Kill Pump",
|
|
"x": 760,
|
|
"y": 700,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "4b3ea5bd.03248c",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "backward",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 8,
|
|
"width": 3,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"label": "Backward",
|
|
"tooltip": "",
|
|
"color": "",
|
|
"bgcolor": "",
|
|
"icon": "arrow_back",
|
|
"payload": "backward",
|
|
"payloadType": "str",
|
|
"topic": "backward",
|
|
"x": 520,
|
|
"y": 400,
|
|
"wires": [
|
|
[
|
|
"84fd85fd.426878"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "cfe9783a.286438",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "foward",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 10,
|
|
"width": 3,
|
|
"height": 1,
|
|
"passthru": true,
|
|
"label": "Forward",
|
|
"tooltip": "",
|
|
"color": "",
|
|
"bgcolor": "",
|
|
"icon": "arrow_forward",
|
|
"payload": "foward",
|
|
"payloadType": "str",
|
|
"topic": "foward",
|
|
"x": 530,
|
|
"y": 480,
|
|
"wires": [
|
|
[
|
|
"84fd85fd.426878"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "f94950fb.4454f",
|
|
"type": "ui_text_input",
|
|
"z": "7f885510.6173fc",
|
|
"name": "volume",
|
|
"label": "Volume (ml)*",
|
|
"tooltip": "",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 9,
|
|
"width": 3,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"mode": "number",
|
|
"delay": 300,
|
|
"topic": "volume",
|
|
"x": 520,
|
|
"y": 440,
|
|
"wires": [
|
|
[
|
|
"84fd85fd.426878"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "83d75b6b.6afa28",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "kill_pump",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 11,
|
|
"width": 3,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"label": "Cancel pump",
|
|
"tooltip": "",
|
|
"color": "#AD1625",
|
|
"bgcolor": "#333333",
|
|
"icon": "pause",
|
|
"payload": "",
|
|
"payloadType": "str",
|
|
"topic": "",
|
|
"x": 520,
|
|
"y": 520,
|
|
"wires": [
|
|
[
|
|
"8fc930df.c7ae6"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "84fd85fd.426878",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "pump",
|
|
"func": "if(msg.topic === \"volume\"){\n volume = msg.payload;\n global.set(\"volume\",volume);\n}\nif(msg.topic === \"foward\"){\n\n volume = global.get(\"volume\");\n flowrate = global.get(\"flowrate\");\n\n action = \" foward\";\n\n msg.payload = String(volume).concat(' ',flowrate, action);\n return msg;\n}\nif(msg.topic === \"backward\"){\n \n volume = global.get(\"volume\");\n flowrate = global.get(\"flowrate\");\n\n action = \" backward\";\n msg.payload = String(volume).concat(' ',flowrate, action);\n\n return msg;\n}\n\n",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 670,
|
|
"y": 440,
|
|
"wires": [
|
|
[
|
|
"649f7ec8.06a84"
|
|
]
|
|
],
|
|
"info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up\n"
|
|
},
|
|
{
|
|
"id": "649f7ec8.06a84",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "python3.7 $HOME/PlanktonScope/scripts/pump.py",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "pump.py",
|
|
"x": 820,
|
|
"y": 440,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "font-awesome/fa-rotate-left"
|
|
},
|
|
{
|
|
"id": "8fc930df.c7ae6",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "bash $HOME/PlanktonScope/scripts/killer.sh pump.py && bash $HOME/PlanktonScope/scripts/killer.sh pump.py",
|
|
"addpay": false,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "Kill Pump",
|
|
"x": 820,
|
|
"y": 520,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "font-awesome/fa-stop"
|
|
},
|
|
{
|
|
"id": "13ad31b4.5b682e",
|
|
"type": "ui_template",
|
|
"z": "7f885510.6173fc",
|
|
"group": "77a6994b.e3efb8",
|
|
"name": "Device ID",
|
|
"order": 3,
|
|
"width": 0,
|
|
"height": 0,
|
|
"format": "<div>\n Device ID :\n <span id=\"acq_camera_name\">\n Odezenne\n </span>\n</div>",
|
|
"storeOutMessages": true,
|
|
"fwdInMessages": true,
|
|
"templateScope": "local",
|
|
"x": 180,
|
|
"y": 540,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "6bf10b4c.c83c84",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "start",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 14,
|
|
"width": 6,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"label": "Start Acquisition",
|
|
"tooltip": "",
|
|
"color": "",
|
|
"bgcolor": "",
|
|
"icon": "play_circle_fill",
|
|
"payload": "",
|
|
"payloadType": "str",
|
|
"topic": "start",
|
|
"x": 530,
|
|
"y": 680,
|
|
"wires": [
|
|
[
|
|
"3fe055c2.6ab7da"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "2c9498e7.bf0c38",
|
|
"type": "ui_button",
|
|
"z": "7f885510.6173fc",
|
|
"name": "cancel",
|
|
"group": "c62ffbd3.787ef8",
|
|
"order": 15,
|
|
"width": 6,
|
|
"height": 1,
|
|
"passthru": false,
|
|
"label": "Cancel Acquisition",
|
|
"tooltip": "",
|
|
"color": "#AD1625",
|
|
"bgcolor": "#333333",
|
|
"icon": "pause_circle_filled",
|
|
"payload": "",
|
|
"payloadType": "str",
|
|
"topic": "cancel",
|
|
"x": 530,
|
|
"y": 740,
|
|
"wires": [
|
|
[
|
|
"f2acb5e0.c2c898"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "b0fda998.f0ad48",
|
|
"type": "file",
|
|
"z": "7f885510.6173fc",
|
|
"name": "logs.json",
|
|
"filename": "/home/pi/PlanktonScope/logs.json",
|
|
"appendNewline": true,
|
|
"createDir": false,
|
|
"overwriteFile": "false",
|
|
"encoding": "none",
|
|
"x": 820,
|
|
"y": 680,
|
|
"wires": [
|
|
[]
|
|
]
|
|
},
|
|
{
|
|
"id": "3fe055c2.6ab7da",
|
|
"type": "function",
|
|
"z": "7f885510.6173fc",
|
|
"name": "get global",
|
|
"func": "msg.payload = {\n \"sample\":{\n \"sample_project\":global.get(\"sample_project\"),\n \"sample_ship\":global.get(\"sample_ship\"),\n \"sample_operator\":global.get(\"sample_operator\"),\n \"sample_id\":global.get(\"sample_id\"),\n \"sample_sampling_gear\":global.get(\"sample_sampling_gear\"),\n \"sample_hour\":global.get(\"sample_hour\"),\n \"sample_minute\":global.get(\"sample_minute\"),\n \"sample_day\":global.get(\"sample_day\"),\n \"sample_month\":global.get(\"sample_month\"),\n \"sample_year\":global.get(\"sample_year\")\n },\n \"object\":{\n \"object_lat\":global.get(\"object_lat\"),\n \"object_lon\":global.get(\"object_lon\")\n },\n \"acquisition\":{\n \"acq_id\":global.get(\"acq_id\"),\n \"acq_fnumber_objective\":global.get(\"acq_fnumber_objective\"),\n \"acq_celltype\":global.get(\"acq_celltype\"),\n \"acq_maximum_mesh\":global.get(\"acq_maximum_mesh\"),\n \"acq_minimum_mesh\":global.get(\"acq_minimum_mesh\"),\n \"process_pixel\":global.get(\"process_pixel\"),\n \"acq_camera\":global.get(\"acq_camera\"),\n \"acq_instrument\":global.get(\"acq_instrument\"),\n \"acq_software\":global.get(\"acq_software\"),\n \"acq_instrument_ID\":global.get(\"acq_instrument_ID\")\n },\n \"process\":{\n \"process_pixel\":global.get(\"process_pixel\")\n }\n}\nreturn msg;",
|
|
"outputs": 1,
|
|
"noerr": 0,
|
|
"x": 680,
|
|
"y": 680,
|
|
"wires": [
|
|
[
|
|
"b0fda998.f0ad48"
|
|
]
|
|
]
|
|
},
|
|
{
|
|
"id": "f2acb5e0.c2c898",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "sed -ie '$d' /home/pi/PlanktonScope/logs.json",
|
|
"addpay": false,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "Remove last log",
|
|
"x": 840,
|
|
"y": 740,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "font-awesome/fa-close"
|
|
},
|
|
{
|
|
"id": "546bd06b.de8ae",
|
|
"type": "exec",
|
|
"z": "7f885510.6173fc",
|
|
"command": "python3.7 $HOME/PlanktonScope/scripts/pump.py",
|
|
"addpay": true,
|
|
"append": "",
|
|
"useSpawn": "false",
|
|
"timer": "",
|
|
"oldrc": false,
|
|
"name": "pump.py",
|
|
"x": 820,
|
|
"y": 800,
|
|
"wires": [
|
|
[],
|
|
[],
|
|
[]
|
|
],
|
|
"icon": "font-awesome/fa-rotate-left"
|
|
}
|
|
]
|