curious.bio/planktoscope
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planktoscope/scripts
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tpollina c474b3a7e6
Delete Morphocut_segmentation.py
2020-07-14 16:56:17 +02:00
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fan.py Add files via upload 2019-12-14 01:33:17 -08:00
focus.py Update focus.py 2020-01-15 15:46:19 +01:00
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mqtt_pump_focus_image.py Update mqtt_pump_focus_image.py 2020-02-02 04:20:55 +01:00
mqtt_pump_focus_image_segment_strem.py Create mqtt_pump_focus_image_segment_strem.py 2020-02-04 21:00:12 -08:00
mqtt_pump_focus_image_v2.py Create mqtt_pump_focus_image_v2.py 2020-02-04 08:07:58 +01:00
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README.md update README.md 2020-02-09 00:20:14 -08:00

README.md

Focusing

focus.py nb_step orientation
  • nb_step : integer (from 1 to 100000) - number of step to perform by the stage (about 31um/step)
  • orientation : string - orientation of the focus either up or down

Example:

python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up

Pumping

pump.py volume flowrate action
  • volume : integer
  • flowrate : float
  • action : string

Example:

python3.7 $HOME/PlanktonScope/scripts/pump.py 1 10 suck

Image

image.py in_path sample_project sample_id acq_id volume flowrate
  • in_path : string - directory to store acquisitions the path has to end with /
  • sample_project : string
  • sample_id : string
  • acq_id : string
  • volume : integer
  • flowrate : float

Example:

python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2

Light

light.py state
  • state : string - on OR off

Example:

python3.7 $HOME/PlanktonScope/scripts/light.py on

Fan

fan.py state
  • state : string - on OR off

Example:

python3.7 $HOME/PlanktonScope/scripts/fan.py on