Commit graph

51 commits

Author SHA1 Message Date
lukas fricke f497ca1ff0 minor changes to main scan 2025-02-05 14:08:44 +01:00
lukas fricke a17325be5b draw contours on different canvas 2025-02-05 14:07:53 +01:00
lukas fricke 2b3e939c12 clean up startup function 2025-02-05 14:07:39 +01:00
lukas fricke 0d09bb5e96 add image cropping 2025-02-05 14:07:15 +01:00
lukas fricke 0bf4fd2285 see last commit 2025-02-05 14:06:48 +01:00
lukas fricke 91a20b5b13 add choosers, add some functions to count bacteria and the like 2025-02-05 14:06:29 +01:00
lukas fricke 35e0b27364 change actino bacteria volume calculation 2025-02-05 14:03:27 +01:00
lukas fricke df8f2c2fa1 create an index sampleID for reports 2025-01-29 15:47:14 +01:00
lukas fricke d3056fb171 make the date a js date 2025-01-29 15:46:28 +01:00
lukas fricke 3120db9624 remove js to prepare camera toggeling 2025-01-29 15:45:58 +01:00
lukas fricke 77e4204ae0 add date and use standard nameing scheme for protocol and camera setup 2025-01-29 15:45:39 +01:00
lukas fricke d1666ba722 add root feeding nematodes 2025-01-29 15:45:00 +01:00
lukas fricke ab9454b04e add date to results 2025-01-29 15:44:40 +01:00
lukas fricke 31cc529769 change camera chooser value to use the key of the setup 2025-01-29 15:44:26 +01:00
lukas fricke 846f20c13c create report second commit 2025-01-29 15:43:14 +01:00
lukas fricke b5fe55d2e0 make the report initial commit -- there is work todo here still. 2025-01-23 14:33:43 +01:00
lukas fricke abbe0a28bf remove db initialization -> this is done by the index.html 2025-01-23 14:33:03 +01:00
lukas fricke 85ea7d9147 add camera chooser - remove toggle button
use video prefs in startup function
2025-01-23 14:32:23 +01:00
lukas fricke cafac3f6ef change canvas / video / photo size 2025-01-23 14:28:58 +01:00
lukas fricke caa299bfb0 add default option 2025-01-23 14:28:27 +01:00
lukas fricke 1c3264f9cb some minor changes 2025-01-23 14:28:04 +01:00
lukas fricke 57161cbc2d change linewidth of drawing 2025-01-23 14:27:22 +01:00
lukas fricke 6d0fb1cc37 remove some console logging 2025-01-23 14:27:08 +01:00
lukas fricke 796af580ac change layout to make it a little more beautiful 2025-01-23 14:26:56 +01:00
lukas fricke 8294bc4f82 remove organism table from control elements
add choosers and startup when default prefs are loaded.
2025-01-23 14:26:38 +01:00
lukas fricke 78f5d450e9 add dilution, camera, microscope and sample chooser.
use default video prefs to initialize the video. 

startup() when everything is loaded.
2025-01-23 14:25:08 +01:00
lukas fricke 384534ba7f toggle on / off opencv on button click remove debug canvas 2025-01-23 14:21:03 +01:00
lukas fricke d06e8a4893 add indexes to the results - so that you can find them by sampleID 2025-01-23 14:20:19 +01:00
lukas fricke 5d2a40119a fix wrong link 2025-01-23 14:19:49 +01:00
lukas fricke 9861d7c461 change stepsize for cover slip size 2025-01-23 14:19:06 +01:00
lukas fricke 8d12ba267e add meta tags utf-8 2025-01-23 14:18:10 +01:00
lukas fricke 27c88796b3 fix canvas aspect ratio 2025-01-17 03:54:59 +01:00
lukas fricke 2ed29438ee fix canvas aspect ratio 2025-01-17 03:53:54 +01:00
lukas fricke 4d560195cc fix canvas aspect ratio 2025-01-17 03:52:45 +01:00
lukas fricke 3691c617d3 fix video, fix form submit, fix measuring two length instead of one, increase canvas resolution 2025-01-17 03:44:56 +01:00
lukas fricke 99d276c02b fix sending form on submit, 2025-01-17 03:43:54 +01:00
lukas fricke 8460673abf fix missing Main Dilution 2025-01-17 02:42:25 +01:00
lukas fricke b813e80232 update sample prep intake to work like it should. 2025-01-17 02:38:20 +01:00
lukas fricke 56458c4451 fix missing link create datastores on the first page. 2025-01-17 02:36:10 +01:00
lukas fricke 4dfac80fde update and fix links 2025-01-17 02:21:25 +01:00
lukas fricke 7ac01c78c0 add a fitness function and change the way fitting rects are found. 2025-01-17 02:21:13 +01:00
lukas fricke 007b23da89 bacteria counting page (work in progress) like everything else. 2025-01-16 03:30:32 +01:00
lukas fricke 37612b7898 add opencv for automated bacteria counting (hopefully - one day :)) 2025-01-16 03:28:15 +01:00
lukas fricke 7e7cb6770e a page to setup the microscope and calibrate the camera FoV Size 2025-01-16 03:27:33 +01:00
lukas fricke 71710d0c42 sample preparation form -- to define sample preparation protocols 2025-01-16 03:27:00 +01:00
lukas fricke 68ce4294ba simple sample intake form 2025-01-16 03:26:23 +01:00
lukas fricke 5dbb69f52a this is the page where the nematodes are observed. 2025-01-16 03:25:58 +01:00
lukas fricke f2e3de2abe here we'll do the main observation -- filamentous organisms and protozoa 2025-01-16 03:25:32 +01:00
lukas fricke f3404aa83f add an index - and some links 2025-01-16 03:24:22 +01:00
lukas fricke 1c9ddc6edf add bootstrap 2025-01-16 03:24:04 +01:00