.. | ||
fan.py | ||
flow_villefranche.json | ||
flows.json | ||
flows_planktonscope.json | ||
focus.py | ||
image.py | ||
kill_image.sh | ||
killer.sh | ||
light.py | ||
pump.py | ||
README.md |
Focusing
focus.py nb_step
orientation
nb_step
: integer (from 1 to 100000) - number of step to perform by the stage (about 31um/step)orientation
: string - orientation of the focus eitherup
ordown
Example:
python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up
Pumping
pump.py volume
flowrate
action
volume
: integerflowrate
: floataction
: string
Example:
python3.7 $HOME/PlanktonScope/scripts/pump.py 1 10 suck
Image
image.py in_path
sample_project
sample_id
acq_id
volume
flowrate
in_path
: string - directory to store acquisitions the path has to end with /sample_project
: stringsample_id
: stringacq_id
: stringvolume
: integerflowrate
: float
Example:
python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2
Light
light.py state
state
: string -on
ORoff
Example:
python3.7 $HOME/PlanktonScope/scripts/light.py on
Fan
fan.py state
state
: string -on
ORoff
Example:
python3.7 $HOME/PlanktonScope/scripts/fan.py on
Killing Focus or Pump event
killer.sh event_to_kill.py
event_to_kill.py
: string
Example:
bash $HOME/PlanktonScope/scripts/killer.sh pump.py
Kill Image
kill_image.sh image.py sample_project
sample_id
acq_id
sample_project
: stringsample_id
: stringacq_id
: string
Example:
bash $HOME/PlanktonScope/scripts/killer.sh image.py tara_pacific station_125 exp_1