75 lines
1.6 KiB
Markdown
75 lines
1.6 KiB
Markdown
_________________
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### Focusing
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##### focus.py `nb_step` `orientation`
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- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)
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- `orientation` : **string** - orientation of the focus either `up` or `down`
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Example:
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python3.7 $HOME/PlanktonScope/scripts/focus.py 650 up
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### Pumping
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##### pump.py `volume` `flowrate` `action`
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- `volume` : **integer**
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- `flowrate` : **float**
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- `action` : **string**
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Example:
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python3.7 $HOME/PlanktonScope/scripts/pump.py 1 10 suck
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### Image
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##### image.py `in_path` `sample_project` `sample_id` `acq_id` `volume` `flowrate`
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- `in_path` : **string** - directory to store acquisitions **the path has to end with /**
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- `sample_project` : **string**
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- `sample_id` : **string**
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- `acq_id` : **string**
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- `volume` : **integer**
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- `flowrate` : **float**
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Example:
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python3.7 $HOME/PlanktonScope/scripts/image.py $HOME/PlanktonScope/Acquisitions/ tara_pacific station_125 exp_1 24 3.2
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### Light
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##### light.py `state`
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- `state` : **string**
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Example:
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python3.7 $HOME/PlanktonScope/scripts/light.py on
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### Killing Focus or Pump event
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##### killer.sh `event_to_kill.py`
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- `event_to_kill.py` : **string**
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Example:
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bash $HOME/PlanktonScope/scripts/killer.sh pump.py
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### Kill Image
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##### kill_image.sh image.py `sample_project` `sample_id` `acq_id`
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- `sample_project` : **string**
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- `sample_id` : **string**
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- `acq_id` : **string**
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Example:
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bash $HOME/PlanktonScope/scripts/killer.sh image.py tara_pacific station_125 exp_1
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