curious.bio/planktoscope
curious.bio/planktoscope
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563 commits 2 branches 0 tags 403 MiB
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187 commits

Author SHA1 Message Date
Romain Bazile 0bdd85366a update: fix various bugs 
flow: improve update handling
 2021-06-30 22:43:58 +02:00
Romain Bazile 40e9c9c08c update: fix branch update 
(cherry picked from commit dc1c7a8e423e0f42a3621199c43a6a1640b720a2)
 2021-06-18 11:27:24 +02:00
Romain Bazile 787db1431c segmenter: add metadata regarding operations 
(cherry picked from commit 625f754cd531806742327be920accc9ccf0e5f03)
 2021-06-18 11:27:07 +02:00
Romain Bazile 8436ac2926 segmenter: fix ecotaxa export again 
(cherry picked from commit 253408b5a8156171f5853ed1420f63ebcac0dc7b)
 2021-06-18 11:27:03 +02:00
Romain Bazile 328d227b8f display: detect display availability 
(cherry picked from commit 922b47ca8fdd495b8b2835e9ab5b6430982e1735)
 2021-06-18 11:26:54 +02:00
Romain Bazile a23820e28d update: force git checkout to switch branch 
(cherry picked from commit 2b1d78f28f28abedf1822cddf0021d24bf9c82a0)
 2021-06-18 11:26:47 +02:00
Romain Bazile 8877263371 update: explicitely install scikit-image 
(cherry picked from commit c9f67c59c5e98520c512052214ef67bb8154ff0a)
 2021-06-18 11:26:43 +02:00
Romain Bazile 5a50bdf23a segmenter: fix ecotaxa message 
(cherry picked from commit b652646682e914d66a25e03ac8c348b4234284c7)
 2021-06-18 11:26:38 +02:00
Romain Bazile e18d9835ad segmenter: replace adaptative threshold by simple threshold in pipe 
(cherry picked from commit f6482fcca9abc0f7e027890a57175559a179d060)
 2021-06-18 11:25:46 +02:00
Romain Bazile 5c005ed619 segmenter: fix ecotaxa output bug 
(cherry picked from commit af978d7da07f06923d038e750512b7a07c3b3fd0)
 2021-06-18 11:25:37 +02:00
Romain Bazile ef59fc4ee1 segmenter: add contour export 
(cherry picked from commit 9329cbf8c9fd6a2e3fd5473896a8d1902acfe627)
 2021-06-18 11:25:29 +02:00
Romain Bazile 6675b2ebfc segmenter: operations, add simple threshold and change kernel size 
(cherry picked from commit f142cfafe74691bcf22a94616adb189755095669)
 2021-06-18 11:25:18 +02:00
Romain Bazile 43f01fa893 segmenter: fix median bug calculation 
(cherry picked from commit c5f5745d110a3e88fca638f2051413f656115f74)
 2021-06-18 11:25:11 +02:00
Romain Bazile 4dca53e2e4 segmenter: save a bigger area than needed 
(cherry picked from commit b1d0c4988e80eef2cc3c83618bc62787aa72c6df)
 2021-06-18 11:25:07 +02:00
Romain Bazile 396c5623e9 segmenter: activate option to keep debug images 
(cherry picked from commit 23e023d6c51a89992e0332aef843e59a180d0fac)
 2021-06-18 11:24:59 +02:00
Romain Bazile 8732f8729f segmenter: don't push to pipe if the pipe if full 
(cherry picked from commit 1c5a94e605f7ab52efc6fb2b2fdeefdf2c4ab2e3)
 2021-06-18 11:24:55 +02:00
Romain Bazile 36eccd43f2 segmenter: ecotaxa export, check that there are objects to export 
(cherry picked from commit 31b8c83aa6f0db59c64a62f4caf73cf3974da4f6)
 2021-06-18 11:24:51 +02:00
Romain Bazile 86c322ccbe display: fix the shutdown message line break 
(cherry picked from commit 1d8a599975ef244db0e0533adfc2963ae105e513)
 2021-06-18 11:24:47 +02:00
Romain Bazile 3550dcf362 usb_backup: update rsync flags to improve speed 
(cherry picked from commit 3c4e34f4e132dfebb74d77f089fca5f323e88eed)
 2021-06-18 11:24:42 +02:00
Romain Bazile 07a808aa04 error.svg addition 
(cherry picked from commit f5dfaf5662dd10f2126af5b4db1d54c517af4fa6)
 2021-06-18 11:24:09 +02:00
Romain Bazile bf8cfc73f8 remove old segmenter file 
(cherry picked from commit d92b067dea1721e16922ec22f53c5e5e3b916cf3)
 2021-06-18 11:24:00 +02:00
Romain Bazile a16e807072 display: change shutdown message 
(cherry picked from commit ce0f23d0904c741effafaa86ee01f3503fb610d8)
 2021-06-18 11:23:26 +02:00
Romain Bazile f5d7d8aa6a update: update numpy 
(cherry picked from commit ac39d19139a122f525a1528fb98035886977df03)
 2021-06-18 11:23:20 +02:00
Romain Bazile fedb4a0f09 segmenter: working again! 
(cherry picked from commit 6e0358ede1fd9dc302f962b08e4aa73420b296da)
 2021-06-18 11:23:07 +02:00
Romain Bazile de3a1ff7ce display: fix bug on shutdown 
(cherry picked from commit 08b3563724adea4e4802e671f4733a7958f8345c)
 2021-06-18 11:21:47 +02:00
Romain Bazile 7ad48da054 imager: move and split into submodules 
(cherry picked from commit 0716f25fb7b78140ed1960445810557ad9e6840c)
 2021-06-18 11:21:35 +02:00
Romain Bazile 24aeee4c46 segmenter: first pass, not really working as intended 
(cherry picked from commit e4d7843a35c0c50875bb1e0fe3d29ad3551105e5)
 2021-06-18 11:19:58 +02:00
Romain Bazile aa21393320 update: add pip package upgrade 2021-05-11 02:31:51 +02:00
Romain Bazile 8eb2bd011c display: improve shutdown message 2021-05-11 01:44:49 +02:00
Romain Bazile 6c580b0de1 update: changes to install new modules 2021-05-11 01:44:12 +02:00
Romain Bazile c6ed5bcf6e display: log handling improved 2021-05-11 01:36:00 +02:00
Romain Bazile 3840b15d7d imager: add proper handling of startup exceptions 2021-05-11 01:35:30 +02:00
Romain Bazile 1da571bfef raspimjpeg: force restart of process if no communication 2021-05-11 01:34:58 +02:00
Romain Bazile ffae24f8d6 imager: replace uuidName by uuid 2021-02-27 10:32:05 +01:00
Romain Bazile b69e088f41 scripts: add new module boilerplate 2021-02-27 10:32:00 +01:00
Romain Bazile 6d9d74e949 uuidName: add uuidMachine 2021-02-27 10:31:01 +01:00
Romain Bazile 2b5c5a1d7e imager: proper fix for indent and clean resolution export 2021-01-15 12:47:26 +01:00
Romain Bazile 76b92467df Revert "imager.py: fix indent" 
This reverts commit abaec6232c.
 2021-01-15 12:41:45 +01:00
Romain Bazile abaec6232c imager.py: fix indent 2021-01-15 12:36:21 +01:00
Romain Bazile 3d1c13a70e update.sh: remove special content 2021-01-14 17:04:02 +01:00
Romain Bazile 0bdb95b607 light: fix typo 
imager: format metadata.json
 2020-12-17 17:33:42 +01:00
Romain Bazile 7f2d4ca430 display: module rewrite 2020-12-16 14:02:52 +01:00
Romain Bazile d9550c777b light: the return of i2cdetect to sync messages 2020-12-16 13:58:10 +01:00
Romain Bazile cf2f15594d python: better imaging management of the raspimjpeg process 2020-12-16 13:11:35 +01:00
Romain Bazile b3703388c7 stepper: fix whitespace error 2020-12-15 19:10:08 +01:00
Romain Bazile f8dc86db88 imager: fix on image delay 2020-12-15 17:33:48 +01:00
Romain Bazile dd77155c94 stepper: improve speed 2020-12-15 16:44:47 +01:00
Romain Bazile f801d74c0e imager: bugfix for wrong message received 
If we stop the imager when the pump is still running, we were removing the callback treating the messages from the pump.
The effect is that if a status message has already been sent by the pump, the imager would parse the message with its normal code. So yeah, not nice.
I've now integrated all message treatment in one function, and pump_callback disappeared!
 2020-12-15 16:44:01 +01:00
Romain Bazile 87fb866942 integrity: typo in error message 2020-12-15 16:08:15 +01:00
Romain Bazile f55182d79c raspimjpeg: remove unnecessary scripts 2020-12-08 17:31:23 +01:00